AT1G59940 : response regulator 3
Query Information
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AGICode AT1G59940
Description response regulator 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G59940 response regulator 3 response regulator 3 1 0.33 -0.31
2 AT3G19430 late embryogenesis abundant protein-related / LEA
protein-related		 0.79 0.31 -0.31
3 AT5G64100 Peroxidase superfamily protein 0.79 0.33 -0.33
4 AT1G52050 Mannose-binding lectin superfamily protein 0.78 0.32 -0.31
5 AT1G52060 Mannose-binding lectin superfamily protein 0.77 0.3 -0.32
6 AT2G43050 Plant invertase/pectin methylesterase inhibitor superfamily ATPMEPCRD 0.76 0.3 -0.31
7 AT5G19040 isopentenyltransferase 5 Arabidopsis thaliana
ISOPENTENYLTRANSFERASE 5,
isopentenyltransferase 5		 0.76 0.31 -0.29
8 AT4G32770 tocopherol cyclase, chloroplast / vitamin E deficient 1
(VTE1) / sucrose export defective 1 (SXD1)		 SUCROSE EXPORT DEFECTIVE 1,
VITAMIN E DEFICIENT 1		 -0.76 0.32 -0.34
9 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein -0.75 0.31 -0.31
10 AT2G24420 DNA repair ATPase-related -0.75 0.3 -0.33
11 AT4G19030 NOD26-like major intrinsic protein 1 AT-NLM1, NOD26-LIKE MAJOR
INTRINSIC PROTEIN 1, NOD26-LIKE
INTRINSIC PROTEIN 1;1, NOD26-like
major intrinsic protein 1		 0.74 0.32 -0.31
12 AT2G19990 pathogenesis-related protein-1-like pathogenesis-related
protein-1-like		 0.74 0.31 -0.31
13 AT4G37000 accelerated cell death 2 (ACD2) ACCELERATED CELL DEATH 2,
ARABIDOPSIS THALIANA RED
CHLOROPHYLL CATABOLITE REDUCTASE		 -0.74 0.3 -0.32
14 AT1G73390 Endosomal targeting BRO1-like domain-containing protein -0.73 0.33 -0.3
15 AT4G18430 RAB GTPase homolog A1E RAB GTPase homolog A1E, RAB GTPase
homolog A1E		 0.73 0.29 -0.34
16 AT4G26550 Got1/Sft2-like vescicle transport protein family 0.73 0.32 -0.33
17 AT5G51490 Plant invertase/pectin methylesterase inhibitor superfamily 0.72 0.33 -0.31
18 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A -0.72 0.31 -0.32
19 AT2G19970 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.72 0.33 -0.33
20 AT2G42850 cytochrome P450, family 718 cytochrome P450, family 718 0.72 0.31 -0.31
21 AT5G50920 CLPC homologue 1 ATHSP93-V, CLPC, CLPC homologue 1,
DE-REGULATED CAO ACCUMULATION 1,
HEAT SHOCK PROTEIN 93-V		 -0.72 0.33 -0.3
22 AT2G44790 uclacyanin 2 uclacyanin 2 0.72 0.33 -0.31
23 AT3G54820 plasma membrane intrinsic protein 2;5 plasma membrane intrinsic protein
2;5, PLASMA MEMBRANE INTRINSIC
PROTEIN 2D		 -0.71 0.31 -0.31
24 AT1G04830 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.71 0.29 -0.31
25 AT2G28420 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 8 -0.71 0.3 -0.31
26 AT3G63520 carotenoid cleavage dioxygenase 1 CAROTENOID CLEAVAGE DIOXYGENASE 1,
ATNCED1, carotenoid cleavage
dioxygenase 1, NCED1		 -0.71 0.33 -0.32
27 AT4G03200 catalytics -0.71 0.31 -0.34
28 AT1G12010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.71 0.33 -0.31
29 AT5G01610 Protein of unknown function, DUF538 0.7 0.35 -0.3
30 AT5G66280 GDP-D-mannose 4,6-dehydratase 1 GDP-D-mannose 4,6-dehydratase 1 0.7 0.33 -0.32
31 AT3G13040 myb-like HTH transcriptional regulator family protein -0.7 0.32 -0.3
32 AT5G37300 O-acyltransferase (WSD1-like) family protein WSD1 -0.7 0.32 -0.3
33 AT1G78120 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 12 0.7 0.32 -0.31
34 AT4G16750 Integrase-type DNA-binding superfamily protein -0.7 0.3 -0.31
35 AT4G34360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.33 -0.29
36 AT4G25090 Riboflavin synthase-like superfamily protein 0.69 0.32 -0.3
37 AT5G54370 Late embryogenesis abundant (LEA) protein-related 0.69 0.32 -0.31
38 AT3G47980 Integral membrane HPP family protein 0.69 0.33 -0.31
39 AT4G11290 Peroxidase superfamily protein 0.69 0.3 -0.34
40 AT2G23410 cis-prenyltransferase cis-prenyltransferase,
cis-prenyltransferase		 0.69 0.32 -0.33
41 AT5G65990 Transmembrane amino acid transporter family protein -0.68 0.32 -0.32
42 AT5G10130 Pollen Ole e 1 allergen and extensin family protein 0.68 0.33 -0.31
43 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 -0.68 0.32 -0.32
44 AT4G15390 HXXXD-type acyl-transferase family protein 0.68 0.32 -0.31
45 AT1G70580 alanine-2-oxoglutarate aminotransferase 2 alanine-2-oxoglutarate
aminotransferase 2,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 2		 -0.68 0.33 -0.3
46 AT5G41180 leucine-rich repeat transmembrane protein kinase family
protein		 0.67 0.31 -0.28
47 AT2G34300 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.67 0.31 -0.34
48 AT5G51890 Peroxidase superfamily protein -0.67 0.31 -0.31
49 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.34 -0.29
50 AT5G65890 ACT domain repeat 1 ACT domain repeat 1 -0.67 0.32 -0.32
51 AT5G60140 AP2/B3-like transcriptional factor family protein 0.67 0.3 -0.31
52 AT5G60530 late embryogenesis abundant protein-related / LEA
protein-related		 0.67 0.33 -0.31
53 AT3G09300 OSBP(oxysterol binding protein)-related protein 3B OSBP(oxysterol binding
protein)-related protein 3B		 0.67 0.34 -0.3
54 AT1G28140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2301, transmembrane
(InterPro:IPR019275); Has 140 Blast hits to 140 proteins in
72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi
- 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3
(source: NCBI BLink).		 -0.67 0.33 -0.33
55 AT4G28650 Leucine-rich repeat transmembrane protein kinase family
protein		 0.67 0.32 -0.32
56 AT3G62280 GDSL-like Lipase/Acylhydrolase superfamily protein 0.66 0.34 -0.3
57 AT5G67180 target of early activation tagged (EAT) 3 target of early activation tagged
(EAT) 3		 -0.66 0.3 -0.34
58 AT3G63250 homocysteine methyltransferase 2 HOMOCYSTEINE METHYLTRANSFERASE-2,
HOMOCYSTEINE METHYLTRANSFERASE-2,
homocysteine methyltransferase 2		 0.66 0.32 -0.3
59 AT3G21510 histidine-containing phosphotransmitter 1 histidine-containing
phosphotransmitter 1		 0.66 0.32 -0.32 IPI
60 AT5G42860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G45688.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.66 0.29 -0.32
61 AT1G09420 glucose-6-phosphate dehydrogenase 4 glucose-6-phosphate dehydrogenase
4		 -0.66 0.32 -0.31
62 AT1G29020 Calcium-binding EF-hand family protein 0.66 0.32 -0.29
63 AT2G45990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 312
Blast hits to 312 proteins in 90 species: Archae - 0;
Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 -0.66 0.33 -0.31
64 AT4G10250 HSP20-like chaperones superfamily protein ATHSP22.0 -0.65 0.31 -0.3
65 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.65 0.33 -0.32
66 AT5G27920 F-box family protein 0.65 0.31 -0.31
67 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 -0.65 0.3 -0.32
68 AT1G62280 SLAC1 homologue 1 SLAC1 homologue 1 0.65 0.32 -0.34
69 AT2G23630 SKU5 similar 16 SKU5 similar 16 0.65 0.33 -0.32
70 AT5G04970 Plant invertase/pectin methylesterase inhibitor superfamily 0.65 0.33 -0.33
71 AT4G35200 Arabidopsis protein of unknown function (DUF241) 0.65 0.32 -0.31
72 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.65 0.33 -0.3
73 AT3G09690 alpha/beta-Hydrolases superfamily protein 0.64 0.29 -0.32
74 AT5G11980 conserved oligomeric Golgi complex component-related / COG
complex component-related		 0.64 0.3 -0.31
75 AT1G09130 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.64 0.31 -0.33
76 AT1G07080 Thioredoxin superfamily protein -0.64 0.33 -0.32
77 AT4G26490 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.64 0.31 -0.31
78 AT4G36670 Major facilitator superfamily protein AtPLT6, AtPMT6, polyol transporter
6, polyol/monosaccharide
transporter 6		 0.64 0.3 -0.3
79 AT3G42800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 853 Blast hits
to 340 proteins in 98 species: Archae - 0; Bacteria - 94;
Metazoa - 145; Fungi - 62; Plants - 95; Viruses - 0; Other
Eukaryotes - 457 (source: NCBI BLink).		 0.64 0.33 -0.3
80 AT5G52880 F-box family protein -0.64 0.33 -0.3
81 AT5G27680 RECQ helicase SIM RECQ helicase SIM 0.64 0.31 -0.29
82 AT5G20380 phosphate transporter 4;5 phosphate transporter 4;5 -0.64 0.32 -0.31
83 AT3G23400 Plastid-lipid associated protein PAP / fibrillin family
protein		 fibrillin 4 -0.63 0.32 -0.31
84 AT5G24313 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.63 0.3 -0.32
85 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.63 0.3 -0.32
86 AT2G45750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.63 0.3 -0.3
87 AT1G65090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits
to 1033 proteins in 192 species: Archae - 0; Bacteria - 61;
Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42;
Other Eukaryotes - 598 (source: NCBI BLink).		 -0.63 0.31 -0.32
88 AT1G11670 MATE efflux family protein 0.63 0.3 -0.31
89 AT3G04870 zeta-carotene desaturase PIGMENT DEFECTIVE EMBRYO 181,
SPONTANEOUS CELL DEATH 1,
zeta-carotene desaturase		 -0.63 0.32 -0.32
90 AT1G23210 glycosyl hydrolase 9B6 glycosyl hydrolase 9B6, glycosyl
hydrolase 9B6		 0.63 0.3 -0.3
91 AT1G07250 UDP-glucosyl transferase 71C4 UDP-glucosyl transferase 71C4 -0.62 0.34 -0.32
92 AT4G34040 RING/U-box superfamily protein -0.62 0.31 -0.31
93 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 -0.62 0.33 -0.33
94 AT5G64090 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Hyccin
(InterPro:IPR018619); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G21050.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.32 -0.33
95 AT4G09340 SPla/RYanodine receptor (SPRY) domain-containing protein -0.61 0.29 -0.33
96 AT4G00430 plasma membrane intrinsic protein 1;4 plasma membrane intrinsic protein
1;4, PLASMA MEMBRANE INTRINSIC
PROTEIN 1E, TRANSMEMBRANE PROTEIN
C		 -0.61 0.31 -0.3
97 AT1G01520 Homeodomain-like superfamily protein ALTERED SEED GERMINATION 4 -0.61 0.3 -0.33
98 AT4G25140 oleosin 1 OLEOSIN 1, oleosin 1 -0.61 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
99 C0151 Monogalactosyldiacylgycerol-34:4 - a Monogalactosyldiacylgycerol glycolipid biosynthesis,
triacylglycerol degradation,
linoleate biosynthesis I,
glutathione redox reactions I 		0.73 0.51 -0.51 C0151
100 C0188 Nicotine (-)-Nicotine Nicotine - 0.66 0.42 -0.48 C0188