AT1G24050 : -
Query Information
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AGICode AT1G24050
Description RNA-processing, Lsm domain
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G24050 RNA-processing, Lsm domain 1 0.34 -0.32
2 AT2G05210 Nucleic acid-binding, OB-fold-like protein ATPOT1, Protection of Telomeres 1a -0.87 0.35 -0.31
3 AT5G57300 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.86 0.32 -0.3
4 AT1G32690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast
hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.84 0.31 -0.34
5 AT1G66970 SHV3-like 2 Glycerophosphodiester
phosphodiesterase (GDPD) like 1,
SHV3-like 2		 -0.83 0.33 -0.28
6 AT2G27730 copper ion binding 0.83 0.3 -0.31
7 AT1G11300 protein serine/threonine kinases;protein kinases;ATP
binding;sugar binding;kinases;carbohydrate binding		 -0.83 0.32 -0.32
8 AT5G11520 aspartate aminotransferase 3 aspartate aminotransferase 3,
YELLOW-LEAF-SPECIFIC GENE 4		 0.83 0.32 -0.35
9 AT1G49750 Leucine-rich repeat (LRR) family protein -0.82 0.31 -0.3
10 AT2G25910 3'-5' exonuclease domain-containing protein / K homology
domain-containing protein / KH domain-containing protein		 0.82 0.29 -0.32
11 AT5G51040 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF339 (InterPro:IPR005631); Has 532 Blast
hits to 532 proteins in 207 species: Archae - 0; Bacteria -
285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0;
Other Eukaryotes - 150 (source: NCBI BLink).		 0.82 0.33 -0.31
12 AT3G22290 Endoplasmic reticulum vesicle transporter protein 0.82 0.31 -0.3
13 AT3G18050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits
to 66 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.82 0.32 -0.32
14 AT1G61520 photosystem I light harvesting complex gene 3 photosystem I light harvesting
complex gene 3		 -0.82 0.3 -0.31
15 AT1G68140 Protein of unknown function (DUF1644) 0.81 0.33 -0.33
16 AT5G07440 glutamate dehydrogenase 2 glutamate dehydrogenase 2 0.81 0.31 -0.33
17 AT3G24170 glutathione-disulfide reductase glutathione-disulfide reductase,
glutathione-disulfide reductase		 0.8 0.29 -0.31
18 AT4G19170 nine-cis-epoxycarotenoid dioxygenase 4 carotenoid cleavage dioxygenase 4,
nine-cis-epoxycarotenoid
dioxygenase 4		 -0.8 0.32 -0.31
19 AT3G54890 photosystem I light harvesting complex gene 1 photosystem I light harvesting
complex gene 1		 -0.79 0.32 -0.31
20 AT1G06180 myb domain protein 13 myb domain protein 13, ATMYBLFGN,
myb domain protein 13		 0.79 0.32 -0.31
21 AT5G67490 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1674 (InterPro:IPR012875); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.79 0.32 -0.3
22 AT3G16000 MAR binding filament-like protein 1 MAR binding filament-like protein
1		 -0.79 0.32 -0.3
23 AT1G52230 photosystem I subunit H2 PHOTOSYSTEM I SUBUNIT H-2,
photosystem I subunit H2, PSI-H		 -0.79 0.33 -0.35
24 AT3G22630 20S proteasome beta subunit D1 20S proteasome beta subunit D1,
PRCGB		 0.79 0.29 -0.31
25 AT2G29630 thiaminC PYRIMIDINE REQUIRING, thiaminC -0.79 0.31 -0.29
26 AT1G50280 Phototropic-responsive NPH3 family protein -0.78 0.3 -0.3
27 AT2G31180 myb domain protein 14 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 14, myb domain protein 14,
MYB14AT		 0.78 0.31 -0.32
28 AT1G29330 ER lumen protein retaining receptor family protein ARABIDOPSIS ENDOPLASMIC RETICULUM
RETENTION DEFECTIVE 2, ARABIDOPSIS
THALIANA ENDOPLASMIC RETICULUM
RETENTION DEFECTIVE 2, ENDOPLASMIC
RETICULUM RETENTION DEFECTIVE 2		 0.78 0.29 -0.32
29 AT5G50740 Heavy metal transport/detoxification superfamily protein -0.78 0.3 -0.31
30 AT2G32920 PDI-like 2-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 9, PDI-like
2-3, PROTEIN DISULFIDE ISOMERASE
9, PDI-like 2-3		 0.78 0.31 -0.33
31 AT3G01280 voltage dependent anion channel 1 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 1, voltage
dependent anion channel 1		 0.78 0.3 -0.31
32 AT3G59060 phytochrome interacting factor 3-like 6 PHYTOCHROME-INTERACTING FACTOR 5,
phytochrome interacting factor
3-like 6		 -0.78 0.31 -0.29
33 AT3G47470 light-harvesting chlorophyll-protein complex I subunit A4 CAB4, light-harvesting
chlorophyll-protein complex I
subunit A4		 -0.78 0.3 -0.33
34 AT5G54270 light-harvesting chlorophyll B-binding protein 3 light-harvesting chlorophyll
B-binding protein 3, LHCB3*1		 -0.78 0.3 -0.31
35 AT3G60380 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: hydroxyproline-rich glycoprotein family protein
(TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in
424 species: Archae - 6; Bacteria - 372; Metazoa - 2603;
Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes -
2147 (source: NCBI BLink).		 -0.78 0.3 -0.32
36 AT5G02130 Tetratricopeptide repeat (TPR)-like superfamily protein NDP1 0.77 0.33 -0.33
37 AT5G42890 sterol carrier protein 2 STEROL CARRIER PROTEIN 2, sterol
carrier protein 2		 0.77 0.3 -0.32
38 AT3G61070 peroxin 11E peroxin 11E 0.77 0.31 -0.31
39 AT4G00860 Protein of unknown function (DUF1138) Arabidopsis thaliana ozone-induced
protein 1, ATOZI1		 0.77 0.34 -0.3
40 AT5G11960 Protein of unknown function (DUF803) 0.77 0.31 -0.32
41 AT5G47500 Pectin lyase-like superfamily protein pectin methylesterase 5 -0.77 0.3 -0.31
42 AT1G64400 AMP-dependent synthetase and ligase family protein long-chain acyl-CoA synthetase 3 -0.77 0.3 -0.33
43 AT3G08940 light harvesting complex photosystem II light harvesting complex
photosystem II		 -0.76 0.32 -0.31
44 AT1G60800 NSP-interacting kinase 3 NSP-interacting kinase 3 -0.76 0.3 -0.32
45 AT4G12130 Glycine cleavage T-protein family 0.76 0.32 -0.32
46 AT3G54790 ARM repeat superfamily protein -0.76 0.31 -0.32
47 AT2G29440 glutathione S-transferase tau 6 glutathione S-transferase tau 6,
GLUTATHIONE S-TRANSFERASE 24,
glutathione S-transferase tau 6		 0.76 0.32 -0.31
48 AT3G61950 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.76 0.34 -0.3
49 AT3G27690 photosystem II light harvesting complex gene 2.3 LIGHT-HARVESTING CHLOROPHYLL
B-BINDING 2, photosystem II light
harvesting complex gene 2.3,
LHCB2.4		 -0.76 0.29 -0.32
50 AT1G24180 Thiamin diphosphate-binding fold (THDP-binding) superfamily
protein		 IAA-CONJUGATE-RESISTANT 4 0.76 0.33 -0.32
51 AT3G23605 Ubiquitin-like superfamily protein 0.76 0.31 -0.32
52 AT5G07800 Flavin-binding monooxygenase family protein -0.76 0.34 -0.3
53 AT3G59400 enzyme binding;tetrapyrrole binding GENOMES UNCOUPLED 4 -0.76 0.31 -0.33
54 AT2G01540 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.76 0.29 -0.29
55 AT2G28130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.75 0.32 -0.31
56 AT2G39020 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.75 0.32 -0.29
57 AT5G59350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.75 0.32 -0.33
58 AT5G16440 isopentenyl diphosphate isomerase 1 isopentenyl diphosphate isomerase
1		 0.75 0.32 -0.32
59 AT4G12340 copper ion binding 0.75 0.32 -0.31
60 AT1G23790 Plant protein of unknown function (DUF936) -0.75 0.31 -0.31
61 AT3G25690 Hydroxyproline-rich glycoprotein family protein Arabidopsis thaliana CHLOROPLAST
UNUSUAL POSITIONING 1, CHLOROPLAST
UNUSUAL POSITIONING 1		 -0.75 0.32 -0.32
62 AT4G27440 protochlorophyllide oxidoreductase B protochlorophyllide oxidoreductase
B		 -0.75 0.31 -0.32
63 AT4G37080 Protein of unknown function, DUF547 -0.75 0.31 -0.35
64 AT1G65900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to
306 proteins in 119 species: Archae - 19; Bacteria - 238;
Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 -0.75 0.3 -0.3
65 AT5G65020 annexin 2 annexin 2 0.75 0.32 -0.31
66 AT4G14400 ankyrin repeat family protein ACCELERATED CELL DEATH 6 -0.74 0.33 -0.32
67 AT5G27550 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.74 0.31 -0.31
68 AT2G30390 ferrochelatase 2 ATFC-II, FC-II, ferrochelatase 2 -0.74 0.31 -0.3
69 AT2G17040 NAC domain containing protein 36 NAC domain containing protein 36,
NAC domain containing protein 36		 -0.74 0.31 -0.3
70 AT2G26910 pleiotropic drug resistance 4 ATP-binding cassette G32,
PLEIOTROPIC DRUG RESISTANCE 4,
pleiotropic drug resistance 4,
PERMEABLE CUTICLE 1		 -0.74 0.3 -0.3
71 AT1G73870 B-box type zinc finger protein with CCT domain -0.74 0.29 -0.31
72 AT1G75820 Leucine-rich receptor-like protein kinase family protein ATCLV1, CLAVATA 1, FASCIATA 3,
FLOWER DEVELOPMENT 5		 -0.74 0.31 -0.3
73 AT5G55520 CONTAINS InterPro DOMAIN/s: Kinesin-related protein
(InterPro:IPR010544); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G26660.1); Has 32425
Blast hits to 20462 proteins in 1550 species: Archae - 335;
Bacteria - 3392; Metazoa - 16996; Fungi - 2645; Plants -
1561; Viruses - 54; Other Eukaryotes - 7442 (source: NCBI
BLink).		 -0.74 0.33 -0.31
74 AT2G47690 NADH-ubiquinone oxidoreductase-related 0.74 0.3 -0.31
75 AT1G06010 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.74 0.3 -0.33
76 AT1G68890 magnesium ion binding;thiamin pyrophosphate
binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-
hydroxy-3-cyclohexene-1-carboxylic-acid synthases		 -0.74 0.32 -0.33
77 AT4G10340 light harvesting complex of photosystem II 5 light harvesting complex of
photosystem II 5		 -0.74 0.29 -0.33
78 AT4G28780 GDSL-like Lipase/Acylhydrolase superfamily protein -0.74 0.31 -0.31
79 AT1G51080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 11 growth stages; Has 101 Blast hits to 98 proteins
in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38;
Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 -0.74 0.3 -0.34
80 AT1G74240 Mitochondrial substrate carrier family protein 0.74 0.31 -0.32
81 AT1G44170 aldehyde dehydrogenase 3H1 aldehyde dehydrogenase 3H1,
aldehyde dehydrogenase 4		 0.74 0.29 -0.3
82 AT1G64750 deletion of SUV3 suppressor 1(I) deletion of SUV3 suppressor 1(I),
deletion of SUV3 suppressor 1(I)		 0.74 0.31 -0.31
83 AT2G45590 Protein kinase superfamily protein -0.73 0.34 -0.3
84 AT4G34220 Leucine-rich repeat protein kinase family protein -0.73 0.32 -0.3
85 AT1G59720 Tetratricopeptide repeat (TPR)-like superfamily protein CHLORORESPIRATORY REDUCTION28 -0.73 0.34 -0.31
86 AT1G27120 Galactosyltransferase family protein -0.73 0.32 -0.31
87 AT2G32010 CVP2 like 1 CVP2 like 1 -0.73 0.33 -0.32
88 AT4G38690 PLC-like phosphodiesterases superfamily protein -0.73 0.31 -0.3
89 AT1G03630 protochlorophyllide oxidoreductase C protochlorophyllide oxidoreductase
C, PORC		 -0.73 0.3 -0.3
90 AT3G19300 Protein kinase superfamily protein -0.73 0.29 -0.31
91 AT2G39930 isoamylase 1 ARABIDOPSIS THALIANA ISOAMYLASE 1,
isoamylase 1		 -0.72 0.31 -0.33
92 AT2G22610 Di-glucose binding protein with Kinesin motor domain -0.72 0.29 -0.31
93 AT5G63410 Leucine-rich repeat protein kinase family protein -0.72 0.33 -0.32
94 AT2G35470 unknown protein; Has 25 Blast hits to 25 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.34 -0.32
95 AT1G03400 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.32 -0.31
96 AT1G22740 RAB GTPase homolog G3B ATRABG3B, RAB7, RAB75, RAB GTPase
homolog G3B		 -0.72 0.32 -0.3
97 AT1G07650 Leucine-rich repeat transmembrane protein kinase -0.72 0.31 -0.32
98 AT5G11510 myb domain protein 3r-4 myb domain protein 3R4, myb domain
protein 3r-4		 -0.72 0.34 -0.32