AT1G03060 : SPIRRIG
Query Information
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AGICode AT1G03060
Description Beige/BEACH domain ;WD domain, G-beta repeat protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 1 0.3 -0.32
2 AT4G32620 Enhancer of polycomb-like transcription factor protein 0.77 0.34 -0.32
3 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.72 0.31 -0.33
4 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.72 0.32 -0.32
5 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.71 0.32 -0.31
6 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.71 0.32 -0.32
7 AT1G65380 Leucine-rich repeat (LRR) family protein Receptor Like Protein 10, clavata
2		 0.7 0.34 -0.31
8 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.33 -0.32
9 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.69 0.3 -0.3
10 AT1G76860 Small nuclear ribonucleoprotein family protein -0.68 0.31 -0.3
11 AT4G34040 RING/U-box superfamily protein 0.68 0.3 -0.32
12 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B 0.68 0.31 -0.3
13 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.67 0.3 -0.32
14 AT2G36810 ARM repeat superfamily protein 0.67 0.32 -0.34
15 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.67 0.33 -0.34
16 AT4G14110 COP9 signalosome, subunit CSN8 CONSTITUTIVE PHOTOMORPHOGENIC 9,
COP9 SIGNALOSOME SUBUNIT 8, EMBRYO
DEFECTIVE 143, FUSCA 7		 -0.67 0.3 -0.31
17 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.66 0.33 -0.33
18 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.66 0.31 -0.32
19 AT2G45540 WD-40 repeat family protein / beige-related 0.66 0.34 -0.33
20 ATCG00530 CemA-like proton extrusion protein-related YCF10 0.66 0.34 -0.34
21 AT3G06400 chromatin-remodeling protein 11 chromatin-remodeling protein 11 0.66 0.33 -0.31
22 AT1G02360 Chitinase family protein -0.66 0.33 -0.3
23 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.65 0.32 -0.31
24 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.65 0.3 -0.32
25 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.65 0.32 -0.29
26 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 0.64 0.31 -0.31
27 AT1G28570 SGNH hydrolase-type esterase superfamily protein 0.64 0.34 -0.33
28 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.64 0.31 -0.31
29 AT1G31810 Formin Homology 14 Formin Homology 14 0.64 0.33 -0.3
30 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 0.64 0.3 -0.31
31 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A 0.64 0.32 -0.32
32 AT1G09010 glycoside hydrolase family 2 protein 0.64 0.32 -0.3
33 AT1G80930 MIF4G domain-containing protein / MA3 domain-containing
protein		 0.64 0.3 -0.32
34 AT5G43310 COP1-interacting protein-related 0.64 0.32 -0.34
35 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.63 0.33 -0.31
36 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.63 0.33 -0.28
37 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 0.63 0.3 -0.32
38 AT5G52020 Integrase-type DNA-binding superfamily protein -0.63 0.31 -0.32
39 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB 0.63 0.31 -0.32
40 AT1G80860 phospholipid N-methyltransferase ARABIDOPSIS PHOSPHOLIPID
N-METHYLTRANSFERASE, phospholipid
N-methyltransferase		 -0.62 0.33 -0.32
41 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 0.62 0.33 -0.3
42 AT4G00300 fringe-related protein -0.62 0.3 -0.31
43 AT5G27970 ARM repeat superfamily protein 0.62 0.34 -0.3
44 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 0.62 0.3 -0.32
45 AT1G17070 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 0.62 0.29 -0.32
46 AT1G67140 HEAT repeat-containing protein SWEETIE 0.62 0.3 -0.28
47 AT3G63180 TIC-like TICKLE, TIC-like 0.62 0.31 -0.31
48 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 0.62 0.31 -0.3
49 AT2G04830 Protein of unknown function (DUF295) 0.62 0.31 -0.34
50 AT4G33210 F-box family protein SLOW MOTION 0.62 0.29 -0.31
51 AT4G27270 Quinone reductase family protein -0.62 0.34 -0.32
52 AT3G54280 DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA binding;helicases		 ATBTAF1, BTAF1, CHA16, CHR16, ROOT
GROWTH DEFECTIVE 3		 0.62 0.31 -0.3
53 AT2G25660 embryo defective 2410 embryo defective 2410 0.62 0.31 -0.32
54 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 0.62 0.31 -0.3
55 AT1G48090 calcium-dependent lipid-binding family protein 0.62 0.31 -0.3
56 AT2G43800 Actin-binding FH2 (formin homology 2) family protein 0.62 0.3 -0.33
57 AT1G02020 nitroreductase family protein 0.61 0.32 -0.32
58 AT2G20460 transposable element gene 0.61 0.31 -0.34
59 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.61 0.3 -0.32
60 AT4G00630 K+ efflux antiporter 2 ATKEA2, K+ efflux antiporter 2 0.61 0.33 -0.3
61 AT1G35740 pseudogene, similar to putative beta-1,3-glucan synthase,
blastp match of 57% identity and 2.1e-14 P-value to
GP|23503034|gb|AAK49452.2|AF304372_1|AF304372 putative
beta-1,3-glucan synthase {Nicotiana alata}		 -0.61 0.32 -0.32
62 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 -0.61 0.33 -0.31
63 AT2G07505 zinc ion binding -0.61 0.31 -0.32
64 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.6 0.31 -0.32
65 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.6 0.34 -0.31
66 AT1G22510 RING/U-box protein with domain of unknown function (DUF
1232)		 -0.6 0.31 -0.32
67 AT4G21323 Subtilase family protein 0.6 0.32 -0.33
68 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.6 0.32 -0.31
69 AT1G71820 SEC6 SEC6 0.6 0.32 -0.32
70 AT5G52140 RING/U-box superfamily protein -0.6 0.3 -0.33
71 AT1G79200 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.31 -0.3
72 AT3G46220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2042 (InterPro:IPR018611); Has 559
Blast hits to 533 proteins in 154 species: Archae - 3;
Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50;
Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink).		 0.6 0.31 -0.28
73 AT3G43740 Leucine-rich repeat (LRR) family protein -0.6 0.33 -0.31
74 AT1G23820 spermidine synthase 1 spermidine synthase 1 -0.6 0.31 -0.32
75 AT1G59650 Protein of unknown function (DUF1336) CW14 0.6 0.32 -0.33
76 AT3G01880 Plant protein of unknown function (DUF946) 0.59 0.3 -0.31
77 AT4G36630 Vacuolar sorting protein 39 EMBRYO DEFECTIVE 2754 0.59 0.32 -0.32
78 AT4G29620 Cytidine/deoxycytidylate deaminase family protein 0.59 0.3 -0.31
79 AT3G24650 AP2/B3-like transcriptional factor family protein ABA INSENSITIVE 3, ABSCISIC ACID
INSENSITIVE 3, SUGAR INSENSITIVE
10		 0.59 0.32 -0.29
80 AT1G58230 binding 0.59 0.33 -0.3
81 AT3G04160 unknown protein; Has 1711 Blast hits to 1353 proteins in
195 species: Archae - 0; Bacteria - 64; Metazoa - 693;
Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes -
546 (source: NCBI BLink).		 0.59 0.29 -0.3
82 AT2G24950 Protein of Unknown Function (DUF239) -0.59 0.3 -0.31
83 AT4G38180 FAR1-related sequence 5 FAR1-related sequence 5 0.58 0.31 -0.31
84 AT5G15725 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.31 -0.3
85 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.58 0.29 -0.32
86 AT4G31960 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.32 -0.31
87 AT1G66750 CDK-activating kinase 4 AT;CDKD;2, CDK-activating kinase
4, CDK-ACTIVATING KINASE 4,
CYCLIN-DEPENDENT KINASE D1;2,
CDKD;2		 -0.58 0.33 -0.37
88 AT5G02670 BEST Arabidopsis thaliana protein match is: poly(A)
polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.58 0.28 -0.3
89 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.58 0.3 -0.33
90 AT4G25580 CAP160 protein 0.58 0.3 -0.3
91 AT5G08170 porphyromonas-type peptidyl-arginine deiminase family
protein		 AGMATINE IMINOHYDROLASE, EMBRYO
DEFECTIVE 1873		 -0.58 0.31 -0.33
92 AT5G18230 transcription regulator NOT2/NOT3/NOT5 family protein 0.57 0.3 -0.31
93 AT3G05070 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18
(InterPro:IPR013169); Has 292 Blast hits to 292 proteins in
153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi
- 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42
(source: NCBI BLink).		 -0.57 0.3 -0.33
94 AT3G26560 ATP-dependent RNA helicase, putative 0.57 0.32 -0.34
95 AT4G25720 glutaminyl cyclase ARABIDOPSIS THALIANA GLUTAMINYL
CYCLASE, glutaminyl cyclase,
GLUTAMINYL CYCLOTRANSFERASE		 -0.57 0.31 -0.3
96 AT5G48990 Galactose oxidase/kelch repeat superfamily protein 0.57 0.33 -0.3
97 AT3G29010 Biotin/lipoate A/B protein ligase family -0.57 0.3 -0.35
98 AT4G14410 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 basic Helix-Loop-Helix 104 -0.57 0.3 -0.31
99 AT1G04070 translocase of outer membrane 22-I ATTOM22-I, translocase of outer
membrane 22-I		 -0.57 0.32 -0.3
100 AT1G33540 serine carboxypeptidase-like 18 serine carboxypeptidase-like 18 -0.56 0.3 -0.33
101 AT1G75510 Transcription initiation factor IIF, beta subunit -0.56 0.31 -0.32
102 AT2G42210 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-3, OEP16-3 -0.55 0.32 -0.32
103 AT2G37430 C2H2 and C2HC zinc fingers superfamily protein -0.55 0.32 -0.32
104 AT2G24600 Ankyrin repeat family protein -0.54 0.34 -0.33
105 AT2G13660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.54 0.29 -0.35
106 AT5G07570 glycine/proline-rich protein -0.54 0.29 -0.31
107 AT5G47440 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.54 0.35 -0.32
108 AT1G69810 WRKY DNA-binding protein 36 ATWRKY36, WRKY DNA-binding protein
36		 -0.54 0.32 -0.34
109 AT3G07600 Heavy metal transport/detoxification superfamily protein -0.54 0.34 -0.31
110 AT5G57220 cytochrome P450, family 81, subfamily F, polypeptide 2 cytochrome P450, family 81,
subfamily F, polypeptide 2		 -0.54 0.32 -0.34
111 AT3G48370 transposable element gene -0.53 0.32 -0.33
112 AT3G53880 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C11		 -0.53 0.32 -0.31
113 AT5G11870 Alkaline phytoceramidase (aPHC) -0.53 0.33 -0.33
114 AT3G47700 RINT-1 / TIP-1 family maigo2 -0.53 0.32 -0.3
115 AT1G08990 plant glycogenin-like starch initiation protein 5 plant glycogenin-like starch
initiation protein 5		 -0.53 0.31 -0.3
116 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.53 0.3 -0.33
117 AT2G40790 C-terminal cysteine residue is changed to a serine 2 C-terminal cysteine residue is
changed to a serine 2, C-terminal
cysteine residue is changed to a
serine 2		 -0.52 0.33 -0.29
118 AT5G63980 Inositol monophosphatase family protein ALTERED EXPRESSION OF APX2 8,
ATSAL1, FIERY1, HIGH EXPRESSION OF
OSMOTICALLY RESPONSIVE GENES 2,
ROTUNDA 1, SAL1, suppressors of
PIN1 overexpression 1		 -0.52 0.31 -0.3
119 ATMG00450 hypothetical protein ORF106B -0.52 0.32 -0.32
120 AT1G55030 RNI-like superfamily protein -0.52 0.32 -0.3
121 AT4G05250 Ubiquitin-like superfamily protein -0.52 0.33 -0.3
122 AT5G16200 50S ribosomal protein-related -0.52 0.33 -0.32
123 AT4G27890 HSP20-like chaperones superfamily protein -0.52 0.31 -0.32
124 AT3G11820 syntaxin of plants 121 AT-SYR1, ATSYP121, SYNTAXIN
RELATED PROTEIN 1, PENETRATION1,
syntaxin of plants 121, SYNTAXIN
RELATED PROTEIN 1		 -0.52 0.32 -0.28
125 AT3G30400 transposable element gene -0.52 0.31 -0.32