AT2G03820 : -
Query Information
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AGICode AT2G03820
Description nonsense-mediated mRNA decay NMD3 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 1 0.3 -0.33
2 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.86 0.3 -0.33
3 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.84 0.31 -0.29
4 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.82 0.31 -0.31
5 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.81 0.29 -0.32
6 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10		 0.8 0.29 -0.31
7 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.79 0.3 -0.31
8 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.79 0.32 -0.32
9 AT3G16310 mitotic phosphoprotein N' end (MPPN) family protein 0.79 0.32 -0.34
10 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.79 0.32 -0.32
11 AT1G20300 Pentatricopeptide repeat (PPR) superfamily protein 0.79 0.31 -0.31
12 AT4G38890 FMN-linked oxidoreductases superfamily protein 0.79 0.29 -0.32
13 AT2G44020 Mitochondrial transcription termination factor family
protein		 0.78 0.3 -0.31
14 AT2G36930 zinc finger (C2H2 type) family protein 0.78 0.32 -0.29
15 AT3G04820 Pseudouridine synthase family protein 0.78 0.33 -0.32
16 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.78 0.31 -0.31
17 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.78 0.31 -0.33
18 AT1G69250 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.78 0.31 -0.31
19 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.77 0.3 -0.31
20 AT5G01230 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.77 0.31 -0.29
21 AT4G28480 DNAJ heat shock family protein 0.77 0.32 -0.3
22 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.76 0.33 -0.32
23 AT5G12220 las1-like family protein 0.75 0.32 -0.31
24 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.75 0.33 -0.3
25 AT1G32860 Glycosyl hydrolase superfamily protein 0.75 0.3 -0.33
26 AT4G25500 arginine/serine-rich splicing factor 35 arginine/serine-rich splicing
factor 40, AT-SRP40, ARABIDOPSIS
THALIANA ARGININE/SERINE-RICH
SPLICING FACTOR 35, ATRSP40,
arginine/serine-rich splicing
factor 40, arginine/serine-rich
splicing factor 35		 0.75 0.32 -0.3
27 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.74 0.32 -0.33
28 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.74 0.32 -0.31
29 AT4G01320 Peptidase family M48 family protein ATSTE24, STE24 0.74 0.33 -0.3
30 AT2G25970 KH domain-containing protein 0.74 0.31 -0.32
31 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.74 0.3 -0.3
32 AT1G03905 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette I19 0.74 0.32 -0.32
33 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.73 0.32 -0.3
34 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.3 -0.29
35 AT4G00090 Transducin/WD40 repeat-like superfamily protein 0.73 0.3 -0.32
36 AT5G58660 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.73 0.31 -0.33
37 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.73 0.32 -0.31
38 AT1G22730 MA3 domain-containing protein 0.73 0.33 -0.31
39 AT5G61370 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.32 -0.32
40 AT3G56510 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.33 -0.32
41 AT3G53990 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.73 0.3 -0.32
42 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.33 -0.31
43 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.72 0.31 -0.32
44 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 0.72 0.31 -0.3
45 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.72 0.3 -0.31
46 AT5G48250 B-box type zinc finger protein with CCT domain 0.72 0.31 -0.31
47 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.72 0.32 -0.31
48 AT1G02330 CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756); Has
1239 Blast hits to 998 proteins in 204 species: Archae - 4;
Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).		 0.72 0.35 -0.31
49 AT2G24500 Zinc finger protein 622 FZF 0.72 0.31 -0.33
50 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).		 0.72 0.29 -0.3
51 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.72 0.31 -0.3
52 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 0.72 0.33 -0.31
53 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.71 0.3 -0.3
54 AT1G07420 sterol 4-alpha-methyl-oxidase 2-1 Arabidopsis thaliana sterol
4-alpha-methyl oxidase 1, sterol
4-alpha-methyl-oxidase 2-1		 0.71 0.32 -0.32
55 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.71 0.32 -0.32
56 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.71 0.31 -0.3
57 AT2G34970 Trimeric LpxA-like enzyme 0.71 0.31 -0.31
58 AT2G40650 PRP38 family protein 0.71 0.33 -0.3
59 AT1G71210 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.34 -0.3
60 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.71 0.31 -0.28
61 AT3G26640 Transducin/WD40 repeat-like superfamily protein LIGHT-REGULATED WD 2 0.71 0.3 -0.3
62 AT1G53035 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.31 -0.32
63 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.7 0.32 -0.31
64 AT4G21170 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.29 -0.31
65 AT1G28060 Pre-mRNA-splicing factor 3 0.7 0.31 -0.34
66 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 0.7 0.31 -0.32
67 AT5G42950 GYF domain-containing protein 0.7 0.31 -0.31
68 AT1G27930 Protein of unknown function (DUF579) 0.7 0.32 -0.33
69 AT5G24460 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.7 0.28 -0.32
70 AT2G39120 Ubiquitin carboxyl-terminal hydrolase family protein what's this factor 9 0.7 0.32 -0.31
71 AT5G63120 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.3 -0.31
72 AT1G17665 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to
146 proteins in 39 species: Archae - 0; Bacteria - 4;
Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.69 0.31 -0.3
73 AT3G25210 Tetratricopeptide repeat (TPR)-like superfamily protein 0.69 0.33 -0.32
74 AT5G51130 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.69 0.3 -0.31
75 AT3G23080 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.69 0.31 -0.32
76 AT3G59990 methionine aminopeptidase 2B methionine aminopeptidase 2B 0.69 0.32 -0.32
77 AT1G68190 B-box zinc finger family protein -0.69 0.33 -0.34
78 AT3G51270 protein serine/threonine kinases;ATP binding;catalytics 0.69 0.32 -0.31
79 AT2G40780 Nucleic acid-binding, OB-fold-like protein 0.69 0.31 -0.3
80 AT1G48430 Dihydroxyacetone kinase -0.68 0.32 -0.33
81 AT1G67870 glycine-rich protein -0.67 0.33 -0.29
82 AT4G32240 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.67 0.3 -0.32
83 AT1G17360 BEST Arabidopsis thaliana protein match is:
COP1-interacting protein-related (TAIR:AT1G72410.1); Has
9949 Blast hits to 7480 proteins in 576 species: Archae -
12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants -
444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI
BLink).		 -0.67 0.32 -0.32
84 AT5G67150 HXXXD-type acyl-transferase family protein -0.67 0.31 -0.31
85 AT3G01980 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.32 -0.31
86 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 -0.67 0.33 -0.32
87 AT5G48640 Cyclin family protein -0.67 0.3 -0.32
88 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.66 0.31 -0.33
89 AT4G15560 Deoxyxylulose-5-phosphate synthase AtCLA1, CLA, CLOROPLASTOS
ALTERADOS 1, DEF,
1-DEOXY-D-XYLULOSE 5-PHOSPHATE
SYNTHASE 2, 1-DEOXY-D-XYLULOSE
5-PHOSPHATE SYNTHASE		 -0.66 0.3 -0.28
90 AT5G63530 farnesylated protein 3 ARABIDOPSIS THALIANA FARNESYLATED
PROTEIN 3, farnesylated protein 3		 -0.64 0.31 -0.34
91 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.31 -0.33
92 AT2G45740 peroxin 11D peroxin 11D -0.64 0.32 -0.3
93 AT1G64720 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 CP5 -0.64 0.31 -0.32
94 AT2G40030 nuclear RNA polymerase D1B ATNRPD1B, DEFECTIVE IN MERISTEM
SILENCING 5, DRD3, nuclear RNA
polymerase D1B, NRPE1		 -0.64 0.31 -0.33
95 AT5G51290 Diacylglycerol kinase family protein -0.64 0.31 -0.3
96 AT1G78020 Protein of unknown function (DUF581) -0.64 0.34 -0.29
97 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.63 0.31 -0.29
98 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.63 0.31 -0.29
99 AT5G07890 myosin heavy chain-related -0.63 0.33 -0.33
100 AT3G52360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast
hits to 34 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.33 -0.32
101 AT2G39435 Phosphatidylinositol N-acetyglucosaminlytransferase subunit
P-related		 -0.62 0.32 -0.33
102 AT5G18140 Chaperone DnaJ-domain superfamily protein -0.62 0.34 -0.32
103 AT4G19660 NPR1-like protein 4 ATNPR4, NPR1-like protein 4 -0.62 0.31 -0.32
104 AT3G18270 cytochrome P450, family 77, subfamily A, polypeptide 5
pseudogene		 cytochrome P450, family 77,
subfamily A, polypeptide 5
pseudogene		 -0.62 0.32 -0.31
105 AT5G66420 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP033271 (InterPro:IPR008322), TIM-barrel signal
transduction protein, predicted (InterPro:IPR009215); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.32 -0.34
106 AT1G27690 Protein of unknown function (DUF620) -0.62 0.32 -0.32
107 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 -0.61 0.31 -0.33
108 AT1G30160 Protein of unknown function (DUF295) -0.61 0.34 -0.31
109 AT1G49480 related to vernalization1 1 related to vernalization1 1 -0.61 0.3 -0.31
110 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.3 -0.32
111 AT4G01510 Arv1-like protein ARV2 -0.61 0.32 -0.33
112 AT4G18570 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.31 -0.33
113 AT3G02700 NC domain-containing protein-related -0.6 0.31 -0.32
114 AT2G01680 Ankyrin repeat family protein -0.6 0.33 -0.33
115 AT4G24740 FUS3-complementing gene 2 FUS3-complementing gene 2, AME1,
FUS3-complementing gene 2		 -0.6 0.31 -0.32
116 AT1G35340 ATP-dependent protease La (LON) domain protein -0.6 0.32 -0.31
117 AT4G29250 HXXXD-type acyl-transferase family protein -0.59 0.33 -0.33
118 AT2G34490 cytochrome P450, family 710, subfamily A, polypeptide 2 cytochrome P450, family 710,
subfamily A, polypeptide 2		 -0.59 0.3 -0.33
119 AT1G12730 GPI transamidase subunit PIG-U -0.59 0.33 -0.3