AT2G03830 : root meristem growth factor 8
Query Information
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AGICode AT2G03830
Description Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G03830 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 8 1 0.31 -0.33
2 AT2G41800 Protein of unknown function, DUF642 0.75 0.31 -0.32
3 AT1G09380 nodulin MtN21 /EamA-like transporter family protein 0.72 0.3 -0.32
4 AT3G49260 IQ-domain 21 IQ-domain 21 -0.7 0.32 -0.33
5 AT2G45430 AT-hook motif nuclear-localized protein 22 AT-hook motif nuclear-localized
protein 22		 0.7 0.34 -0.33
6 AT4G08780 Peroxidase superfamily protein 0.7 0.3 -0.33
7 AT2G46850 Protein kinase superfamily protein 0.7 0.33 -0.33
8 AT3G21310 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.69 0.3 -0.33
9 AT3G55920 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.69 0.31 -0.3
10 AT4G23690 Disease resistance-responsive (dirigent-like protein)
family protein		 0.69 0.31 -0.32
11 AT3G04570 AT-hook motif nuclear-localized protein 19 AT-hook motif nuclear-localized
protein 19		 0.68 0.31 -0.31
12 AT2G04800 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: hypocotyl, root;
Has 4 Blast hits to 4 proteins in 1 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.32 -0.29
13 AT3G18400 NAC domain containing protein 58 NAC domain containing protein 58,
NAC domain containing protein 58		 0.67 0.31 -0.31
14 AT2G02070 indeterminate(ID)-domain 5 indeterminate(ID)-domain 5,
indeterminate(ID)-domain 5		 -0.67 0.31 -0.33
15 AT1G13970 Protein of unknown function (DUF1336) 0.66 0.32 -0.31
16 AT3G15300 VQ motif-containing protein 0.66 0.3 -0.29
17 AT5G01870 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.66 0.32 -0.3
18 AT5G33340 Eukaryotic aspartyl protease family protein CONSTITUTIVE DISEASE RESISTANCE 1 -0.65 0.32 -0.32
19 AT2G46950 cytochrome P450, family 709, subfamily B, polypeptide 2 cytochrome P450, family 709,
subfamily B, polypeptide 2		 0.65 0.31 -0.32
20 AT3G49900 Phototropic-responsive NPH3 family protein -0.65 0.3 -0.32
21 AT2G14100 cytochrome P450, family 705, subfamily A, polypeptide 13 cytochrome P450, family 705,
subfamily A, polypeptide 13		 0.65 0.31 -0.32
22 AT2G30340 LOB domain-containing protein 13 LOB domain-containing protein 13 0.65 0.33 -0.32
23 AT4G33100 CONTAINS InterPro DOMAIN/s: Mitochondrial
distribution/morphology family 35/apoptosis
(InterPro:IPR007918); Has 214 Blast hits to 214 proteins in
102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi
- 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 0.64 0.32 -0.3
24 AT5G10510 AINTEGUMENTA-like 6 AINTEGUMENTA-like 6, PLETHORA 3 0.64 0.3 -0.32
25 AT2G39190 Protein kinase superfamily protein ATATH8 -0.64 0.31 -0.32
26 AT3G15690 Single hybrid motif superfamily protein -0.64 0.32 -0.3
27 AT1G24430 HXXXD-type acyl-transferase family protein 0.64 0.32 -0.31
28 AT3G27320 alpha/beta-Hydrolases superfamily protein -0.63 0.32 -0.32
29 AT3G21770 Peroxidase superfamily protein 0.63 0.33 -0.31
30 AT5G08330 TCP family transcription factor AtTCP11, TCP domain protein 11 -0.63 0.3 -0.29
31 AT4G16370 oligopeptide transporter oligopeptide transporter, OPT3,
oligopeptide transporter		 -0.63 0.31 -0.31
32 AT2G45420 LOB domain-containing protein 18 LOB domain-containing protein 18 0.62 0.33 -0.3
33 AT2G13610 ABC-2 type transporter family protein ATP-binding cassette G5 -0.62 0.32 -0.32
34 AT1G08430 aluminum-activated malate transporter 1 aluminum-activated malate
transporter 1, ARABIDOPSIS
THALIANA ALUMINUM-ACTIVATED MALATE
TRANSPORTER 1		 0.62 0.3 -0.34
35 ATCG00380 chloroplast ribosomal protein S4 chloroplast ribosomal protein S4 -0.62 0.31 -0.3
36 AT3G23310 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 -0.61 0.29 -0.31
37 AT2G44450 beta glucosidase 15 beta glucosidase 15 0.61 0.31 -0.32
38 AT2G05910 Protein of unknown function (DUF567) 0.61 0.3 -0.32
39 AT1G03770 RING 1B ARABIDOPSIS THALIANA RING 1B, RING
1B		 0.61 0.31 -0.32
40 AT5G62260 AT hook motif DNA-binding family protein 0.61 0.32 -0.33
41 AT1G73590 Auxin efflux carrier family protein ARABIDOPSIS THALIANA PIN-FORMED 1,
PIN-FORMED 1		 0.61 0.31 -0.32
42 AT4G36870 BEL1-like homeodomain 2 BEL1-like homeodomain 2, SAWTOOTH
1		 -0.61 0.33 -0.33
43 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.61 0.32 -0.31
44 AT1G05577 Domain of unknown function (DUF966) 0.61 0.32 -0.29
45 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein 0.61 0.33 -0.3
46 AT3G11050 ferritin 2 ferritin 2, ferritin 2 0.6 0.31 -0.33
47 AT3G62100 indole-3-acetic acid inducible 30 indole-3-acetic acid inducible 30 0.6 0.33 -0.31
48 AT1G53230 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor
3		 TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 3		 -0.6 0.3 -0.32
49 AT5G03420 5'-AMP-activated protein kinase-related -0.6 0.31 -0.32
50 AT2G18245 alpha/beta-Hydrolases superfamily protein -0.6 0.31 -0.29
51 AT5G48650 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.6 0.32 -0.3
52 AT1G71695 Peroxidase superfamily protein -0.6 0.3 -0.3
53 AT3G28680 Serine carboxypeptidase S28 family protein -0.59 0.32 -0.32
54 AT1G63610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast
hits to 411 proteins in 100 species: Archae - 0; Bacteria -
231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0;
Other Eukaryotes - 212 (source: NCBI BLink).		 -0.59 0.31 -0.33
55 AT3G20830 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 0.59 0.33 -0.31
56 AT4G36430 Peroxidase superfamily protein 0.59 0.31 -0.32
57 AT5G67280 receptor-like kinase receptor-like kinase -0.59 0.31 -0.31
58 AT4G16950 Disease resistance protein (TIR-NBS-LRR class) family RECOGNITION OF PERONOSPORA
PARASITICA 5		 -0.59 0.32 -0.31
59 AT3G50550 unknown protein; Has 75703 Blast hits to 19796 proteins in
1115 species: Archae - 327; Bacteria - 34383; Metazoa -
14453; Fungi - 7466; Plants - 2586; Viruses - 958; Other
Eukaryotes - 15530 (source: NCBI BLink).		 0.59 0.32 -0.32
60 AT5G53180 polypyrimidine tract-binding protein 2 POLYPYRIMIDINE TRACT-BINDING
PROTEIN 2, polypyrimidine
tract-binding protein 2		 -0.58 0.32 -0.32
61 AT3G14280 unknown protein; Has 51 Blast hits to 51 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.32 -0.31
62 AT1G50560 cytochrome P450, family 705, subfamily A, polypeptide 25 cytochrome P450, family 705,
subfamily A, polypeptide 25		 0.58 0.3 -0.33
63 AT2G25520 Drug/metabolite transporter superfamily protein 0.58 0.32 -0.32
64 AT3G04590 AT hook motif DNA-binding family protein -0.58 0.32 -0.31
65 AT5G01830 ARM repeat superfamily protein 0.58 0.3 -0.31
66 AT3G18930 RING/U-box superfamily protein -0.58 0.31 -0.31
67 AT3G23960 F-box and associated interaction domains-containing protein -0.57 0.34 -0.32
68 AT5G52560 UDP-sugar pyrophosphorylase UDP-sugar pyrophosphorylase,
UDP-sugar pyrophosphorylase		 -0.57 0.31 -0.33
69 AT3G15900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.57 0.32 -0.34
70 AT1G64980 Nucleotide-diphospho-sugar transferases superfamily protein -0.57 0.32 -0.34
71 AT2G21170 triosephosphate isomerase PLASTID ISOFORM TRIOSE PHOSPHATE
ISOMERASE, triosephosphate
isomerase		 -0.57 0.31 -0.3
72 AT5G22870 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.57 0.33 -0.32
73 AT1G60060 Serine/threonine-protein kinase WNK (With No
Lysine)-related		 -0.57 0.31 -0.31
74 AT1G66950 pleiotropic drug resistance 11 ATP-binding cassette G39,
PLEIOTROPIC DRUG RESISTANCE 11,
pleiotropic drug resistance 11		 0.57 0.3 -0.33
75 AT1G03440 Leucine-rich repeat (LRR) family protein -0.57 0.33 -0.33
76 AT1G08320 bZIP transcription factor family protein bZIP21, TGACG (TGA) motif-binding
protein 9		 0.57 0.3 -0.33
77 AT1G01320 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.32 -0.29
78 AT2G47070 squamosa promoter binding protein-like 1 squamosa promoter binding
protein-like 1		 -0.57 0.34 -0.31
79 AT2G16595 Translocon-associated protein (TRAP), alpha subunit 0.57 0.31 -0.31
80 AT2G30670 NAD(P)-binding Rossmann-fold superfamily protein -0.56 0.3 -0.31
81 AT1G77655 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.29 -0.31
82 AT1G21310 extensin 3 extensin 3, extensin 3,
ROOT-SHOOT-HYPOCOTYL DEFECTIVE		 0.56 0.33 -0.28
83 AT1G32120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane; EXPRESSED
IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C
globular stage, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like,
plant mobile domain (InterPro:IPR019557), Protein of
unknown function DUF716 (InterPro:IPR006904); BEST
Arabidopsis thaliana protein match is:
Aminotransferase-like, plant mobile domain family protein
(TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins
in 576 species: Archae - 4; Bacteria - 1182; Metazoa -
7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other
Eukaryotes - 4469 (source: NCBI BLink).		 0.56 0.34 -0.3
84 AT1G19190 alpha/beta-Hydrolases superfamily protein 0.56 0.31 -0.32
85 ATCG00520 unfolded protein binding YCF4 -0.56 0.32 -0.3
86 AT3G62660 galacturonosyltransferase-like 7 galacturonosyltransferase-like 7 -0.56 0.29 -0.32
87 AT1G01090 pyruvate dehydrogenase E1 alpha pyruvate dehydrogenase E1 alpha -0.56 0.32 -0.33
88 AT3G60080 RING/U-box superfamily protein -0.56 0.32 -0.32
89 AT1G05540 Protein of unknown function (DUF295) -0.56 0.32 -0.31
90 AT1G63970 isoprenoid F isoprenoid F,
2C-METHYL-D-ERYTHRITOL
2,4-CYCLODIPHOSPHATE SYNTHASE		 -0.56 0.31 -0.31
91 AT1G26680 transcriptional factor B3 family protein 0.55 0.31 -0.32
92 AT5G24690 Protein of unknown function (DUF3411) -0.55 0.32 -0.31
93 AT4G24540 AGAMOUS-like 24 AGAMOUS-like 24 -0.55 0.35 -0.32
94 ATCG00660 ribosomal protein L20 ribosomal protein L20 -0.55 0.3 -0.32
95 AT3G25020 receptor like protein 42 receptor like protein 42, receptor
like protein 42		 -0.55 0.33 -0.34