AT2G03880 : required for efficiency of mitochondrial editing 1.....
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT2G03880
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G03880 Pentatricopeptide repeat (PPR) superfamily protein required for efficiency of
mitochondrial editing 1		 1 0.3 -0.3
2 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE 0.79 0.31 -0.32
3 AT1G64320 myosin heavy chain-related 0.76 0.31 -0.32
4 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.73 0.32 -0.32
5 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.31 -0.31
6 AT3G24440 Fibronectin type III domain-containing protein VIN3-LIKE 1, VERNALIZATION 5 0.72 0.33 -0.34
7 AT1G17630 Pentatricopeptide repeat (PPR-like) superfamily protein 0.72 0.31 -0.31
8 AT5G44880 transposable element gene -0.72 0.3 -0.31
9 AT2G31040 ATP synthase protein I -related -0.71 0.31 -0.34
10 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein -0.71 0.32 -0.3
11 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.32 -0.31
12 AT1G15870 Mitochondrial glycoprotein family protein 0.7 0.32 -0.32
13 AT1G75930 extracellular lipase 6 extracellular lipase 6 -0.7 0.34 -0.3
14 AT3G16610 pentatricopeptide (PPR) repeat-containing protein 0.7 0.31 -0.32
15 AT1G32600 F-box associated ubiquitination effector family protein -0.69 0.31 -0.31
16 AT2G03390 uvrB/uvrC motif-containing protein -0.69 0.32 -0.31
17 AT4G03750 transposable element gene 0.69 0.32 -0.3
18 AT2G21390 Coatomer, alpha subunit 0.68 0.32 -0.32
19 AT2G14810 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.68 0.29 -0.31
20 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.68 0.32 -0.29
21 AT2G17340 Uncharacterised conserved protein (UCP030210) -0.68 0.31 -0.31
22 AT3G15590 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.33 -0.33
23 AT1G71830 somatic embryogenesis receptor-like kinase 1 SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 1, somatic
embryogenesis receptor-like kinase
1		 0.68 0.31 -0.32
24 AT2G19330 plant intracellular ras group-related LRR 6 plant intracellular ras
group-related LRR 6		 -0.67 0.34 -0.32
25 AT5G47420 Tryptophan RNA-binding attenuator protein-like -0.67 0.32 -0.3
26 AT5G10280 myb domain protein 92 ATMYB64, myb domain protein 92,
myb domain protein 92		 0.67 0.34 -0.31
27 AT4G20400 JUMONJI 14 JUMONJI 14, PKDM7B 0.67 0.33 -0.33
28 AT1G50760 Aminotransferase-like, plant mobile domain family protein 0.67 0.31 -0.33
29 AT4G09950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.66 0.31 -0.3
30 AT3G05780 lon protease 3 lon protease 3 0.66 0.32 -0.31
31 AT5G09330 NAC domain containing protein 82 NAC domain containing protein 82,
NAC domain containing protein 82,
VND-interacting 1		 0.66 0.32 -0.32
32 AT3G23400 Plastid-lipid associated protein PAP / fibrillin family
protein		 fibrillin 4 -0.66 0.29 -0.33
33 AT5G12130 integral membrane TerC family protein TELLURITE RESISTANCE C, PIGMENT
DEFECTIVE 149		 -0.66 0.31 -0.31
34 AT3G30846 transposable element gene -0.66 0.32 -0.3
35 AT2G17510 ribonuclease II family protein EMBRYO DEFECTIVE 2763 0.66 0.33 -0.3
36 AT2G22410 SLOW GROWTH 1 SLOW GROWTH 1 0.66 0.32 -0.31
37 AT5G06810 Mitochondrial transcription termination factor family
protein		 0.66 0.3 -0.32
38 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 -0.66 0.3 -0.32
39 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE		 -0.66 0.32 -0.32
40 AT2G27290 Protein of unknown function (DUF1279) -0.66 0.32 -0.32
41 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.31 -0.3
42 AT4G27390 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.66 0.32 -0.32
43 AT5G62790 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate
reductoisomerase,
PIGMENT-DEFECTIVE EMBRYO 129		 -0.65 0.31 -0.31
44 AT2G37310 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.32 -0.32
45 AT2G23840 HNH endonuclease -0.65 0.33 -0.32
46 AT2G15520 transposable element gene -0.65 0.31 -0.33
47 AT2G03390 uvrB/uvrC motif-containing protein -0.65 0.33 -0.29
48 AT3G22070 proline-rich family protein -0.65 0.34 -0.33
49 AT2G47680 zinc finger (CCCH type) helicase family protein 0.65 0.31 -0.3
50 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 -0.64 0.31 -0.33
51 AT1G59670 glutathione S-transferase TAU 15 glutathione S-transferase TAU 15,
glutathione S-transferase TAU 15		 -0.64 0.3 -0.32
52 AT5G06130 chaperone protein dnaJ-related -0.64 0.31 -0.32
53 AT4G19830 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.64 0.32 -0.33
54 AT4G33800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.64 0.3 -0.32
55 AT1G43810 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.3 -0.33
56 AT1G29600 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.64 0.32 -0.31
57 AT4G10000 Thioredoxin family protein -0.63 0.31 -0.3
58 AT1G49015 DPP6 N-terminal domain-like protein 0.63 0.31 -0.28
59 AT5G10310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.32 -0.33
60 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.63 0.32 -0.29
61 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.63 0.33 -0.31
62 AT1G14310 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.63 0.31 -0.32
63 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 -0.63 0.31 -0.32
64 AT1G69935 short hypocotyl in white light1 SHORT HYPOCOTYL IN WHITE LIGHT1 -0.63 0.32 -0.31
65 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.32 -0.32
66 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 -0.63 0.32 -0.33
67 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.32 -0.31
68 AT2G16835 Aquaporin-like superfamily protein 0.62 0.34 -0.31
69 AT5G39350 Tetratricopeptide repeat (TPR)-like superfamily protein 0.62 0.3 -0.31
70 AT3G45220 Serine protease inhibitor (SERPIN) family protein -0.62 0.31 -0.32
71 AT2G28590 Protein kinase superfamily protein 0.62 0.31 -0.32
72 AT1G79790 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 Arabidopsis thaliana chloroplast
FMN hydrolase 1, flavin
mononucleotide hydrolase 1		 -0.62 0.32 -0.32
73 AT2G40740 WRKY DNA-binding protein 55 WRKY DNA-BINDING PROTEIN 55, WRKY
DNA-binding protein 55		 0.62 0.32 -0.3
74 AT4G31530 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.32 -0.31
75 AT1G33820 unknown protein; Has 46 Blast hits to 44 proteins in 25
species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1;
Plants - 6; Viruses - 0; Other Eukaryotes - 13 (source:
NCBI BLink).		 -0.62 0.32 -0.31
76 AT1G68270 AMP-dependent synthetase and ligase family protein 0.62 0.32 -0.32
77 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 0.62 0.31 -0.33
78 AT4G02750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.62 0.31 -0.32
79 AT5G65800 ACC synthase 5 ACC synthase 5, ATACS5,
CYTOKININ-INSENSITIVE 5, ETHYLENE
OVERPRODUCER 2		 0.62 0.31 -0.33
80 AT2G01110 Sec-independent periplasmic protein translocase ALBINO AND PALE GREEN 2, PGA2,
TWIN-ARGININE TRANSLOCATION C,
unfertilized embryo sac 3		 -0.62 0.32 -0.32
81 AT4G35010 beta-galactosidase 11 beta-galactosidase 11 -0.61 0.31 -0.3
82 AT1G35790 transposable element gene 0.61 0.3 -0.3
83 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.61 0.31 -0.31
84 AT5G59660 Leucine-rich repeat protein kinase family protein -0.61 0.34 -0.31
85 AT5G42910 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.61 0.33 -0.3
86 AT3G29160 SNF1 kinase homolog 11 SNF1 kinase homolog 11, SNF1
kinase homolog 11, SNF1 kinase
homolog 11, SNF1-RELATED PROTEIN
KINASE 1.2		 -0.61 0.35 -0.31
87 AT5G14970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G14910.1); Has 579 Blast hits
to 397 proteins in 95 species: Archae - 0; Bacteria - 294;
Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other
Eukaryotes - 199 (source: NCBI BLink).		 -0.61 0.32 -0.32
88 AT4G32630 ArfGap/RecO-like zinc finger domain-containing protein -0.61 0.31 -0.34
89 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.61 0.32 -0.3
90 AT2G14260 proline iminopeptidase proline iminopeptidase -0.6 0.32 -0.32
91 AT2G44930 Plant protein of unknown function (DUF247) -0.6 0.32 -0.32
92 AT4G03670 transposable element gene -0.6 0.31 -0.33
93 AT3G20030 F-box and associated interaction domains-containing protein -0.6 0.31 -0.31
94 AT1G02120 GRAM domain family protein VASCULAR ASSOCIATED DEATH1 -0.6 0.32 -0.31
95 AT1G50470 F-box associated ubiquitination effector family protein 0.6 0.3 -0.33
96 AT1G53930 Ubiquitin-like superfamily protein -0.6 0.3 -0.32
97 AT1G32220 NAD(P)-binding Rossmann-fold superfamily protein -0.6 0.3 -0.31
98 AT5G37970 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.6 0.34 -0.3
99 AT1G35220 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 313
Blast hits to 185 proteins in 75 species: Archae - 0;
Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).		 0.6 0.3 -0.3
100 AT5G51160 Ankyrin repeat family protein 0.6 0.31 -0.3
101 AT4G20420 Tapetum specific protein TAP35/TAP44 -0.6 0.3 -0.33
102 AT1G29770 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.6 0.33 -0.33
103 AT4G10030 alpha/beta-Hydrolases superfamily protein -0.6 0.3 -0.33
104 AT4G16820 alpha/beta-Hydrolases superfamily protein phospholipase A I beta 2 -0.59 0.32 -0.32
105 AT1G05550 Protein of unknown function (DUF295) 0.59 0.3 -0.32
106 AT2G41120 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 10 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF309
(InterPro:IPR005500); Has 349 Blast hits to 349 proteins in
112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi
- 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127
(source: NCBI BLink).		 -0.59 0.3 -0.31
107 AT1G47720 Primosome PriB/single-strand DNA-binding Organellar Single-stranded 0.59 0.34 -0.31
108 AT4G13200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast,
plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 97 Blast hits to 97 proteins
in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2;
Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink).		 -0.59 0.34 -0.32
109 AT3G53080 D-galactoside/L-rhamnose binding SUEL lectin protein -0.59 0.33 -0.32
110 AT5G11910 alpha/beta-Hydrolases superfamily protein -0.59 0.3 -0.31
111 AT1G35340 ATP-dependent protease La (LON) domain protein -0.59 0.3 -0.31
112 AT5G60970 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor
5		 TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 5		 -0.59 0.33 -0.3
113 AT1G33330 Class I peptide chain release factor -0.58 0.33 -0.31
114 AT2G36920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02870.1); Has 13 Blast hits to 11
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.33 -0.31
115 AT3G61450 syntaxin of plants 73 ATSYP73, syntaxin of plants 73 -0.58 0.32 -0.33
116 AT4G03520 Thioredoxin superfamily protein ATHM2 -0.58 0.32 -0.3
117 AT3G23130 C2H2 and C2HC zinc fingers superfamily protein FLORAL DEFECTIVE 10, FLORAL ORGAN
NUMBER 1, SUPERMAN		 -0.58 0.31 -0.31
118 AT3G60410 Protein of unknown function (DUF1639) -0.58 0.33 -0.32
119 AT5G06490 RING/U-box superfamily protein -0.58 0.3 -0.31
120 AT5G12280 SWAP (Suppressor-of-White-APricot)/surp RNA-binding
domain-containing protein		 -0.58 0.3 -0.34
121 AT2G30170 Protein phosphatase 2C family protein -0.58 0.32 -0.3
122 AT4G28900 transposable element gene -0.58 0.3 -0.3
123 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 -0.58 0.32 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
124 C0188 Nicotine (-)-Nicotine Nicotine - 0.74 0.47 -0.46 C0188
125 C0121 Isoheptylglucosinolate - - - 0.68 0.47 -0.45
126 C0207 Phosphatidylglycerol-34:5 - - - -0.64 0.45 -0.47
127 C0159 MST_1505.6 - - - -0.62 0.43 -0.38