AT2G42560 : -
Query Information
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AGICode AT2G42560
Description late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G42560 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 1 0.33 -0.33
2 AT3G19920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits
to 217 proteins in 16 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.78 0.31 -0.32
3 AT1G35030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34910.1); Has 7 Blast
hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.77 0.31 -0.32
4 AT1G49180 protein kinase family protein 0.72 0.3 -0.31
5 ATMG00470 hypothetical protein ORF122A 0.71 0.33 -0.29
6 AT2G27610 Tetratricopeptide repeat (TPR)-like superfamily protein -0.71 0.32 -0.31
7 AT5G64710 Putative endonuclease or glycosyl hydrolase -0.7 0.3 -0.33
8 AT5G57080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.32 -0.32
9 AT5G27530 Pectin lyase-like superfamily protein 0.7 0.3 -0.32
10 AT2G21490 dehydrin LEA dehydrin LEA 0.7 0.31 -0.31
11 AT5G42230 serine carboxypeptidase-like 41 serine carboxypeptidase-like 41 0.69 0.33 -0.33
12 AT5G65070 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 69, FCL4, MADS
AFFECTING FLOWERING 4		 -0.69 0.32 -0.33
13 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 -0.69 0.32 -0.31
14 AT1G69490 NAC-like, activated by AP3/PI Arabidopsis NAC domain containing
protein 29, NAC-LIKE, ACTIVATED BY
AP3/PI, NAC-like, activated by
AP3/PI		 0.69 0.31 -0.29
15 AT2G23310 Rer1 family protein ATRER1C1 -0.68 0.33 -0.33
16 AT3G04780 Protein of unknown function (DUF1000) -0.67 0.32 -0.3
17 AT1G16030 heat shock protein 70B heat shock protein 70B 0.67 0.31 -0.33
18 AT3G44560 fatty acid reductase 8 fatty acid reductase 8 0.67 0.33 -0.3
19 AT2G26950 myb domain protein 104 myb domain protein 104, myb domain
protein 104		 -0.67 0.3 -0.31
20 AT2G26990 proteasome family protein ATCSN2, CONSTITUTIVE
PHOTOMORPHOGENIC 12, CSN2, FUSCA
12		 -0.67 0.32 -0.31
21 AT5G57500 Galactosyltransferase family protein -0.67 0.33 -0.33
22 AT1G23100 GroES-like family protein -0.67 0.32 -0.32
23 AT5G28560 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; Has 0 Blast hits to 0 proteins in 0 species
(source: NCBI BLink).		 -0.67 0.31 -0.31
24 AT4G27670 heat shock protein 21 heat shock protein 21 0.67 0.31 -0.33
25 AT5G15900 TRICHOME BIREFRINGENCE-LIKE 19 TRICHOME BIREFRINGENCE-LIKE 19 -0.66 0.33 -0.32
26 AT1G28160 Integrase-type DNA-binding superfamily protein -0.66 0.31 -0.29
27 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.66 0.33 -0.32
28 AT3G55950 CRINKLY4 related 3 ATCRR3, CRINKLY4 related 3 -0.65 0.3 -0.33
29 AT3G04080 apyrase 1 apyrase 1, apyrase 1 -0.65 0.32 -0.32
30 AT2G37880 Protein of unknown function, DUF617 0.65 0.32 -0.33
31 AT3G30845 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.31 -0.34
32 AT3G48250 Pentatricopeptide repeat (PPR) superfamily protein Buthionine sulfoximine-insensitive
roots 6		 -0.64 0.32 -0.32
33 AT3G49320 Metal-dependent protein hydrolase -0.64 0.32 -0.31
34 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.64 0.34 -0.31
35 AT1G31370 Ubiquitin-specific protease family C19-related protein 0.64 0.31 -0.3
36 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.64 0.32 -0.33
37 AT1G80910 Protein of unknown function (DUF1712) -0.64 0.34 -0.31
38 AT5G26130 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.64 0.32 -0.33
39 AT4G17160 RAB GTPase homolog B1A ATRAB2B, RAB GTPase homolog B1A,
RAB GTPase homolog B1A		 -0.64 0.32 -0.31
40 AT1G47750 peroxin 11A peroxin 11A -0.64 0.33 -0.33
41 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A		 -0.64 0.32 -0.31
42 AT3G56270 Plant protein of unknown function (DUF827) 0.63 0.32 -0.32
43 AT1G03070 Bax inhibitor-1 family protein 0.63 0.32 -0.32
44 AT1G27990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits
to 86 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.63 0.32 -0.33
45 AT2G25430 epsin N-terminal homology (ENTH) domain-containing protein
/ clathrin assembly protein-related		 -0.63 0.33 -0.3
46 AT4G39220 Rer1 family protein ATRER1A -0.63 0.32 -0.32
47 AT4G19500 nucleoside-triphosphatases;transmembrane
receptors;nucleotide binding;ATP binding		 0.63 0.3 -0.33
48 AT5G27820 Ribosomal L18p/L5e family protein -0.63 0.32 -0.31
49 AT4G04150 transposable element gene 0.63 0.3 -0.33
50 AT5G66140 proteasome alpha subunit D2 proteasome alpha subunit D2 -0.63 0.32 -0.32
51 AT2G19550 alpha/beta-Hydrolases superfamily protein 0.63 0.29 -0.33
52 AT3G22490 Seed maturation protein 0.63 0.31 -0.33
53 AT3G42630 Pentatricopeptide repeat (PPR) superfamily protein 0.63 0.32 -0.31
54 AT5G08430 SWIB/MDM2 domain;Plus-3;GYF 0.62 0.32 -0.33
55 AT5G18450 Integrase-type DNA-binding superfamily protein 0.62 0.31 -0.33
56 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.62 0.31 -0.3
57 AT5G53710 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.62 0.31 -0.32
58 AT4G39560 Galactose oxidase/kelch repeat superfamily protein 0.62 0.31 -0.33
59 AT2G31910 cation/H+ exchanger 21 cation/H+ exchanger 21, cation/H+
exchanger 21		 0.62 0.3 -0.28
60 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 -0.62 0.33 -0.32
61 AT5G24080 Protein kinase superfamily protein 0.62 0.31 -0.32
62 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7		 0.61 0.29 -0.32
63 AT1G68250 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.35 -0.31
64 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.61 0.3 -0.33
65 AT2G38905 Low temperature and salt responsive protein family 0.61 0.3 -0.3
66 AT5G59040 copper transporter 3 copper transporter 3 0.61 0.32 -0.33
67 AT2G13500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G41590.1); Has 126 Blast hits
to 126 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.34 -0.29
68 AT3G56110 prenylated RAB acceptor 1.B1 prenylated RAB acceptor 1.B1 -0.61 0.32 -0.32
69 AT4G30150 CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA
processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast
hits to 49 proteins in 21 species: Archae - 0; Bacteria -
2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.61 0.29 -0.3
70 AT1G77440 20S proteasome beta subunit C2 20S proteasome beta subunit C2 -0.61 0.33 -0.32
71 AT5G05150 autophagy-related gene 18E ARABIDOPSIS THALIANA HOMOLOG OF
YEAST AUTOPHAGY 18E,
autophagy-related gene 18E,
autophagy-related gene 18E		 -0.61 0.34 -0.31
72 AT2G43880 Pectin lyase-like superfamily protein -0.6 0.33 -0.31
73 AT1G64220 translocase of outer membrane 7 kDa subunit 2 translocase of outer membrane 7
kDa subunit 2		 -0.6 0.33 -0.33
74 AT5G22720 F-box/RNI-like superfamily protein 0.6 0.32 -0.31
75 AT1G06310 acyl-CoA oxidase 6 acyl-CoA oxidase 6 -0.6 0.33 -0.32
76 AT1G18190 golgin candidate 2 golgin candidate 2 0.6 0.32 -0.32
77 AT3G01700 arabinogalactan protein 11 arabinogalactan protein 11,
ARABINOGALACTAN PROTEIN 11		 -0.6 0.33 -0.31
78 AT3G13672 TRAF-like superfamily protein 0.6 0.33 -0.31
79 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 0.6 0.3 -0.31
80 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.59 0.32 -0.31
81 AT3G10780 emp24/gp25L/p24 family/GOLD family protein -0.59 0.3 -0.32
82 AT5G23680 Sterile alpha motif (SAM) domain-containing protein 0.59 0.31 -0.31
83 AT4G01280 Homeodomain-like superfamily protein 0.59 0.32 -0.31
84 AT2G41420 proline-rich family protein WINDHOSE 2 -0.59 0.34 -0.32
85 AT3G48370 transposable element gene -0.59 0.31 -0.31
86 AT3G56410 Protein of unknown function (DUF3133) -0.59 0.32 -0.3
87 AT1G68680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 16 growth stages; Has 20 Blast hits to 20 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.59 0.29 -0.31
88 AT5G59030 copper transporter 1 copper transporter 1 -0.59 0.31 -0.34
89 AT3G59920 RAB GDP dissociation inhibitor 2 RAB GDP dissociation inhibitor 2,
RAB GDP dissociation inhibitor 2		 -0.59 0.33 -0.34
90 AT1G33400 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 9 0.59 0.33 -0.31
91 AT3G14780 CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant
(InterPro:IPR004252); BEST Arabidopsis thaliana protein
match is: glucan synthase-like 4 (TAIR:AT3G14570.2); Has
315 Blast hits to 313 proteins in 50 species: Archae - 2;
Bacteria - 16; Metazoa - 11; Fungi - 7; Plants - 181;
Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).		 -0.59 0.3 -0.32
92 AT1G50400 Eukaryotic porin family protein -0.59 0.31 -0.31
93 AT2G42930 Carbohydrate-binding X8 domain superfamily protein -0.59 0.32 -0.32
94 AT3G27660 oleosin 4 OLEOSIN 3, oleosin 4 0.59 0.31 -0.33
95 AT4G15230 pleiotropic drug resistance 2 ATP-binding cassette G30, ATPDR2,
pleiotropic drug resistance 2		 -0.59 0.33 -0.32
96 AT2G35910 RING/U-box superfamily protein -0.59 0.3 -0.32
97 AT1G08250 arogenate dehydratase 6 arogenate dehydratase 6,
Arabidopsis thaliana arogenate
dehydratase 6		 0.59 0.32 -0.31
98 AT3G02390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast.		 -0.58 0.3 -0.31
99 AT5G09790 ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 ARABIDOPSIS TRITHORAX-RELATED
PROTEIN 5, PIGMENT DEFECTIVE 336,
SETDOMAIN GROUP 15		 -0.58 0.32 -0.3
100 AT4G09830 Uncharacterised conserved protein UCP009193 -0.58 0.32 -0.31
101 AT5G27460 Tetratricopeptide repeat (TPR)-like superfamily protein -0.58 0.31 -0.3
102 AT5G67430 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.58 0.32 -0.31
103 AT5G34790 transposable element gene -0.58 0.32 -0.32
104 AT4G33905 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.58 0.31 -0.33
105 AT1G71860 protein tyrosine phosphatase 1 ATPTP1, protein tyrosine
phosphatase 1		 -0.58 0.31 -0.31
106 AT1G14640 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein		 -0.58 0.34 -0.32
107 AT3G16600 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.58 0.32 -0.32
108 AT3G50160 Plant protein of unknown function (DUF247) 0.58 0.31 -0.3
109 AT4G23580 Galactose oxidase/kelch repeat superfamily protein -0.58 0.31 -0.3
110 AT4G28540 casein kinase I-like 6 casein kinase I-like 6, PAPK1 -0.58 0.3 -0.3
111 AT4G34840 Phosphorylase superfamily protein ARABIDOPSIS METHYLTHIOADENOSINE
NUCLEOSIDASE 2, ARABIDOPSIS
METHYLTHIOADENOSINE NUCLEOSIDASE
2, METHYLTHIOADENOSINE
NUCLEOSIDASE 2,
methylthioadenosine nucleosidase 2		 -0.57 0.31 -0.32
112 AT1G60220 UB-like protease 1D OVERLY TOLERANT TO SALT 1, UB-like
protease 1D		 0.57 0.29 -0.29
113 AT1G63930 from the Czech 'roh' meaning 'corner' from the Czech 'roh' meaning
'corner'		 -0.57 0.33 -0.32
114 AT5G01780 2-oxoglutarate-dependent dioxygenase family protein 0.57 0.28 -0.34
115 AT3G02940 myb domain protein 107 myb domain protein 107, myb domain
protein 107		 -0.57 0.32 -0.3
116 AT4G12270 Copper amine oxidase family protein -0.57 0.29 -0.3
117 AT5G62800 Protein with RING/U-box and TRAF-like domains 0.57 0.3 -0.32
118 AT1G20800 F-box family protein -0.57 0.33 -0.33
119 AT3G29400 exocyst subunit exo70 family protein E1 exocyst subunit exo70 family
protein E1, exocyst subunit exo70
family protein E1		 -0.57 0.31 -0.31
120 AT2G26880 AGAMOUS-like 41 AGAMOUS-like 41 0.57 0.32 -0.32
121 AT1G52920 G protein coupled receptor G-PROTEIN COUPLED RECEPTOR 2, G
protein coupled receptor		 0.57 0.32 -0.33
122 AT2G37430 C2H2 and C2HC zinc fingers superfamily protein -0.57 0.31 -0.3
123 AT2G30690 Protein of unknown function, DUF593 -0.56 0.29 -0.32
124 AT5G27080 Transducin family protein / WD-40 repeat family protein AtCDC20.3, cell division cycle
20.3		 0.56 0.32 -0.33
125 AT4G18395 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.56 0.32 -0.29
126 AT4G19010 AMP-dependent synthetase and ligase family protein -0.56 0.31 -0.32
127 AT1G31540 Disease resistance protein (TIR-NBS-LRR class) family -0.56 0.33 -0.3
128 AT5G62400 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.33 -0.32
129 AT2G28830 PLANT U-BOX 12 AtPUB12, PLANT U-BOX 12 -0.56 0.32 -0.32
130 AT1G54240 winged-helix DNA-binding transcription factor family
protein		 -0.56 0.32 -0.32
131 AT3G03290 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.56 0.31 -0.31
132 AT2G28030 Eukaryotic aspartyl protease family protein -0.56 0.34 -0.31
133 AT5G54020 Cysteine/Histidine-rich C1 domain family protein -0.56 0.3 -0.32
134 AT5G25490 Ran BP2/NZF zinc finger-like superfamily protein 0.56 0.3 -0.32
135 AT1G36095 DNA binding 0.55 0.33 -0.31
136 AT2G10380 transposable element gene 0.55 0.32 -0.31
137 AT2G14590 transposable element gene 0.55 0.32 -0.31
138 AT4G04165 transposable element gene 0.55 0.33 -0.33
139 AT2G38900 Serine protease inhibitor, potato inhibitor I-type family
protein		 0.55 0.34 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
140 C0181 MST_2904.3 - - - -0.67 0.45 -0.45
141 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.66 0.47 -0.46 C0030
142 C0108 GMP - GMP guanine and guanosine salvage II,
guanosine nucleotides degradation I,
guanosine nucleotides degradation II,
guanine and guanosine salvage III,
purine nucleotides de novo biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification) 		-0.61 0.45 -0.48 C0108
143 C0201 Phosphatidylglycerol-32:1 - Phosphatidylglycerol-32:1 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		-0.56 0.33 -0.34