AT2G16485 : -
Query Information
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AGICode AT2G16485
Description nucleic acid binding;zinc ion binding;DNA binding
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding 1 0.3 -0.31
2 AT5G43130 TBP-associated factor 4 TBP-associated factor 4,
TBP-associated factor 4B		 0.78 0.34 -0.3
3 AT4G23730 Galactose mutarotase-like superfamily protein -0.77 0.31 -0.32
4 ATMG00640 hydrogen ion transporting ATP synthases, rotational
mechanism;zinc ion binding		 ORF25 0.77 0.3 -0.33
5 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.74 0.31 -0.33
6 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 0.74 0.31 -0.33
7 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.74 0.31 -0.32
8 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 0.73 0.3 -0.35
9 AT2G32730 26S proteasome regulatory complex, non-ATPase subcomplex,
Rpn2/Psmd1 subunit		 0.72 0.31 -0.32
10 AT1G50030 target of rapamycin target of rapamycin 0.72 0.33 -0.32
11 AT5G53440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.72 0.32 -0.31
12 AT1G10390 Nucleoporin autopeptidase 0.71 0.32 -0.29
13 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.7 0.33 -0.31
14 AT5G18210 NAD(P)-binding Rossmann-fold superfamily protein -0.69 0.31 -0.31
15 AT3G43300 HOPM interactor 7 HOPM interactor 7, BFA-VISUALIZED
ENDOCYTIC TRAFFICKING DEFECTIVE1		 0.69 0.33 -0.29
16 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.68 0.33 -0.32
17 AT5G35900 LOB domain-containing protein 35 LOB domain-containing protein 35 -0.68 0.32 -0.31
18 AT5G04490 vitamin E pathway gene 5 vitamin E pathway gene 5 -0.68 0.31 -0.29
19 AT3G54670 Structural maintenance of chromosomes (SMC) family protein ATSMC1, STRUCTURAL MAINTENANCE OF
CHROMOSOMES 1, TITAN8		 0.68 0.33 -0.3
20 AT4G10280 RmlC-like cupins superfamily protein -0.68 0.34 -0.3
21 AT4G29940 pathogenesis related homeodomain protein A pathogenesis related homeodomain
protein A		 0.68 0.32 -0.29
22 AT2G33600 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.31 -0.31
23 AT5G16940 carbon-sulfur lyases -0.67 0.31 -0.31
24 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.66 0.29 -0.31
25 AT4G00150 GRAS family transcription factor ARABIDOPSIS THALIANA HAIRY
MERISTEM 3, HAIRY MERISTEM 3, LOST
MERISTEMS 3		 0.66 0.31 -0.32
26 AT4G34430 DNA-binding family protein SWITCH/SUCROSE NONFERMENTING 3D,
CHB3		 0.66 0.32 -0.32
27 AT1G08620 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 PKDM7D 0.66 0.3 -0.31
28 AT5G24710 Transducin/WD40 repeat-like superfamily protein 0.66 0.33 -0.31
29 AT2G36850 glucan synthase-like 8 GLUCAN SYNTHASE-LIKE 8, ATGSL8,
CHORUS, GSL08, glucan
synthase-like 8		 0.66 0.32 -0.32
30 AT1G60010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.65 0.31 -0.32
31 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain 0.65 0.33 -0.31
32 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.65 0.32 -0.32
33 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 cytochrome P450, family 96,
subfamily A, polypeptide 10		 -0.65 0.33 -0.32
34 AT5G24165 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G23885.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.65 0.32 -0.32
35 AT4G10920 transcriptional coactivator p15 (PC4) family protein (KELP) KELP -0.64 0.3 -0.29
36 AT2G18915 LOV KELCH protein 2 ADAGIO 2, LOV KELCH protein 2 0.64 0.32 -0.3
37 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein 0.64 0.31 -0.31
38 ATMG00580 NADH dehydrogenase subunit 4 NADH dehydrogenase subunit 4 0.64 0.34 -0.32
39 AT1G32490 RNA helicase family protein EMBRYO DEFECTIVE 2733, ENHANCED
SILENCING PHENOTYPE 3		 0.64 0.34 -0.31
40 AT1G08600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATRX, CHR20 0.64 0.3 -0.33
41 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 0.64 0.31 -0.32
42 AT5G58410 HEAT/U-box domain-containing protein 0.64 0.31 -0.33
43 AT5G55040 DNA-binding bromodomain-containing protein 0.64 0.31 -0.29
44 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.63 0.3 -0.31
45 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.63 0.3 -0.31
46 AT1G14310 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.63 0.33 -0.3
47 AT5G59410 Rab5-interacting family protein -0.63 0.33 -0.31
48 AT2G07360 SH3 domain-containing protein 0.63 0.31 -0.32
49 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.31 -0.32
50 AT2G29190 pumilio 2 pumilio 2, pumilio 2 0.63 0.33 -0.32
51 AT5G43870 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.63 0.32 -0.3
52 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.62 0.34 -0.32
53 AT1G02890 AAA-type ATPase family protein 0.62 0.31 -0.33
54 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 0.62 0.3 -0.3
55 AT1G73440 calmodulin-related -0.62 0.31 -0.31
56 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.62 0.3 -0.31
57 AT1G22940 thiamin biosynthesis protein, putative TH-1, THIAMINE REQUIRING 1,
THIAMINEE		 -0.62 0.33 -0.32
58 AT4G35800 RNA polymerase II large subunit RNA polymerase II large subunit,
RNA POLYMERASE II LARGE SUBUNIT,
RNA_POL_II_LSRNA_POL_II_LS, RNA
POLYMERASE II LARGE SUBUNIT		 0.62 0.32 -0.29
59 AT1G35740 pseudogene, similar to putative beta-1,3-glucan synthase,
blastp match of 57% identity and 2.1e-14 P-value to
GP|23503034|gb|AAK49452.2|AF304372_1|AF304372 putative
beta-1,3-glucan synthase {Nicotiana alata}		 -0.62 0.33 -0.31
60 AT5G38560 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 8, proline-rich
extensin-like receptor kinase 8		 0.62 0.33 -0.3
61 AT4G29790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits
to 357 proteins in 124 species: Archae - 0; Bacteria - 74;
Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other
Eukaryotes - 190 (source: NCBI BLink).		 0.61 0.32 -0.31
62 AT3G32940 RNA-binding KH domain-containing protein 0.61 0.32 -0.29
63 AT1G71800 cleavage stimulating factor 64 cleavage stimulating factor 64 0.61 0.32 -0.31
64 AT2G41180 VQ motif-containing protein sigma factor binding protein 2 -0.61 0.3 -0.31
65 AT3G08500 myb domain protein 83 myb domain protein 83, myb domain
protein 83		 -0.61 0.32 -0.31
66 AT5G59660 Leucine-rich repeat protein kinase family protein -0.61 0.32 -0.34
67 AT2G41880 guanylate kinase 1 AGK1, guanylate kinase 1 -0.61 0.29 -0.3
68 AT1G72170 Domain of unknown function (DUF543) -0.61 0.31 -0.33
69 AT1G71830 somatic embryogenesis receptor-like kinase 1 SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 1, somatic
embryogenesis receptor-like kinase
1		 0.61 0.33 -0.31
70 AT2G02640 Cysteine/Histidine-rich C1 domain family protein -0.61 0.34 -0.33
71 AT1G69630 F-box/RNI-like superfamily protein -0.61 0.32 -0.31
72 AT4G35760 NAD(P)H dehydrogenase (quinone)s -0.61 0.32 -0.3
73 AT4G20420 Tapetum specific protein TAP35/TAP44 -0.61 0.31 -0.31
74 ATMG01200 hypothetical protein ORF294 0.6 0.29 -0.32
75 AT1G70720 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.6 0.31 -0.32
76 AT1G31380 TRAF-like family protein -0.6 0.31 -0.33
77 AT2G26510 Xanthine/uracil permease family protein pigment defective embryo 135 0.6 0.33 -0.34
78 AT4G02710 Kinase interacting (KIP1-like) family protein 0.6 0.3 -0.31
79 AT1G69935 short hypocotyl in white light1 SHORT HYPOCOTYL IN WHITE LIGHT1 -0.6 0.29 -0.31
80 AT5G07580 Integrase-type DNA-binding superfamily protein -0.6 0.3 -0.31
81 AT2G01090 Ubiquinol-cytochrome C reductase hinge protein -0.6 0.31 -0.34
82 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE		 -0.6 0.33 -0.31
83 AT3G14340 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.29 -0.31
84 AT4G00660 RNAhelicase-like 8 ATRH8, RNAhelicase-like 8 0.6 0.31 -0.33
85 AT3G05670 RING/U-box protein 0.6 0.29 -0.34
86 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 0.59 0.31 -0.31
87 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.59 0.32 -0.34
88 AT5G38660 acclimation of photosynthesis to environment ACCLIMATION OF PHOTOSYNTHESIS TO
ENVIRONMENT		 -0.59 0.33 -0.31
89 AT1G06230 global transcription factor group E4 global transcription factor group
E4		 0.59 0.3 -0.33
90 AT5G02310 proteolysis 6 proteolysis 6 0.59 0.31 -0.32
91 AT5G27830 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to oxidative stress; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Folate receptor, conserved region (InterPro:IPR018143); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.59 0.33 -0.31
92 AT4G01040 Glycosyl hydrolase superfamily protein -0.59 0.28 -0.32
93 AT3G52890 KCBP-interacting protein kinase KCBP-interacting protein kinase 0.59 0.32 -0.29
94 AT3G56830 Protein of unknown function (DUF565) -0.59 0.33 -0.3
95 AT5G53800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.59 0.33 -0.3
96 AT4G13150 unknown protein; Has 83 Blast hits to 82 proteins in 37
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.59 0.31 -0.29
97 AT4G32730 Homeodomain-like protein ATMYB3R-1, ARABIDOOSIS THALIANA
MYB DOMAIN PROTEIN 3R1, MYB DOMAIN
PROTEIN 3R1, C-MYB-LIKE
TRANSCRIPTION FACTOR 3R-1, PC-MYB1		 0.59 0.32 -0.31
98 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.59 0.31 -0.34
99 AT4G11110 SPA1-related 2 SPA1-related 2 0.58 0.31 -0.31
100 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 -0.58 0.32 -0.33
101 AT5G66740 Protein of unknown function (DUF620) -0.58 0.34 -0.32
102 AT2G39320 Cysteine proteinases superfamily protein -0.58 0.3 -0.31
103 AT5G11040 TRS120 AtTRS120, TRS120 0.58 0.31 -0.28
104 AT2G35630 ARM repeat superfamily protein GEM1, MICROTUBULE ORGANIZATION 1 0.58 0.31 -0.32
105 AT4G25720 glutaminyl cyclase ARABIDOPSIS THALIANA GLUTAMINYL
CYCLASE, glutaminyl cyclase,
GLUTAMINYL CYCLOTRANSFERASE		 -0.58 0.32 -0.31
106 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.58 0.31 -0.31
107 AT3G42310 unknown protein; Has 66 Blast hits to 66 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0;
Plants - 18; Viruses - 31; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.58 0.31 -0.3
108 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.58 0.32 -0.32
109 AT2G19390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits
to 188 proteins in 60 species: Archae - 0; Bacteria - 11;
Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other
Eukaryotes - 41 (source: NCBI BLink).		 0.58 0.33 -0.31
110 AT5G56330 alpha carbonic anhydrase 8 alpha carbonic anhydrase 8, A.
THALIANA ALPHA CARBONIC ANHYDRASE
8		 -0.58 0.33 -0.31
111 AT5G46460 Pentatricopeptide repeat (PPR) superfamily protein 0.58 0.35 -0.3
112 AT4G16030 Ribosomal protein L19e family protein -0.57 0.31 -0.29
113 AT2G41250 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.57 0.32 -0.32
114 AT4G25680 PPPDE putative thiol peptidase family protein -0.57 0.33 -0.31
115 AT2G03390 uvrB/uvrC motif-containing protein -0.57 0.29 -0.31
116 AT5G53280 plastid division1 PLASTID DIVISION1 -0.57 0.31 -0.31
117 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 -0.57 0.3 -0.33
118 AT4G28900 transposable element gene -0.57 0.33 -0.35
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0074 Cystine L-Cystine L-Cystine protein precursor 0.76 0.47 -0.44 C0074
120 C0173 MST_2301.7 - - - 0.75 0.45 -0.45
121 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - 0.74 0.52 -0.49 C0241
122 C0240 Stigmasterol - Stigmasterol plant sterol biosynthesis 0.59 0.45 -0.44 C0240