AT2G04730 : -
Query Information
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AGICode AT2G04730
Description pseudogene, F-box protein-related, contains TIGRFAM TIGR01640 : F-box protein interaction domain; similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis thaliana)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G04730 pseudogene, F-box protein-related, contains TIGRFAM
TIGR01640 : F-box protein interaction domain; similar to
F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana)		 1 0.3 -0.31
2 AT1G16940 F-box/RNI-like/FBD-like domains-containing protein 0.76 0.34 -0.32
3 AT1G11190 bifunctional nuclease i bifunctional nuclease i,
ENDONUCLEASE 1		 -0.73 0.32 -0.31
4 AT1G42365 transposable element gene 0.73 0.3 -0.3
5 AT2G12320 transposable element gene 0.71 0.31 -0.29
6 AT5G43610 sucrose-proton symporter 6 sucrose-proton symporter 6,
sucrose-proton symporter 6		 0.71 0.3 -0.3
7 AT5G17140 Cysteine proteinases superfamily protein 0.71 0.32 -0.31
8 AT1G52360 Coatomer, beta' subunit 0.7 0.32 -0.33
9 AT5G24230 Lipase class 3-related protein 0.7 0.31 -0.33
10 AT3G05260 NAD(P)-binding Rossmann-fold superfamily protein -0.7 0.32 -0.32
11 AT5G65450 ubiquitin-specific protease 17 ubiquitin-specific protease 17 0.69 0.31 -0.32
12 AT1G78470 BEST Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G67390.1); Has 40 Blast hits to 40
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.69 0.34 -0.31
13 AT3G45670 Protein kinase superfamily protein 0.68 0.31 -0.33
14 AT1G44980 pectin methylesterase 7 A. THALIANA PECTIN METHYLESTERASE
7, pectin methylesterase 7		 0.68 0.33 -0.32
15 AT3G30650 transposable element gene 0.68 0.3 -0.29
16 AT5G27190 transposable element gene 0.67 0.29 -0.3
17 AT5G44850 Protein with RNI-like/FBD-like domains 0.66 0.32 -0.33
18 AT2G37160 Transducin/WD40 repeat-like superfamily protein 0.66 0.29 -0.32
19 AT2G44900 ARABIDILLO-1 ARABIDILLO-1, F-box Armadillo
protein 1		 0.65 0.32 -0.29
20 AT3G29210 transposable element gene 0.65 0.3 -0.32
21 AT5G50500 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.65 0.3 -0.29
22 AT2G20350 Integrase-type DNA-binding superfamily protein -0.65 0.33 -0.32
23 AT5G34800 transposable element gene 0.65 0.31 -0.28
24 AT5G17080 Cysteine proteinases superfamily protein 0.65 0.32 -0.31
25 AT5G17960 Cysteine/Histidine-rich C1 domain family protein 0.64 0.31 -0.32
26 AT2G17610 transposable element gene 0.64 0.32 -0.33
27 AT5G14670 ADP-ribosylation factor A1B ADP-ribosylation factor A1B,
ADP-ribosylation factor A1B		 0.64 0.34 -0.32
28 AT2G01770 vacuolar iron transporter 1 ATVIT1, vacuolar iron transporter
1		 0.64 0.32 -0.33
29 AT2G45080 cyclin p3;1 cyclin p3;1 0.64 0.33 -0.3
30 AT4G21020 Late embryogenesis abundant protein (LEA) family protein -0.63 0.31 -0.33
31 AT1G56380 Mitochondrial transcription termination factor family
protein		 0.63 0.34 -0.31
32 AT2G26430 arginine-rich cyclin 1 ARGININE-RICH CYCLIN 1,
arginine-rich cyclin 1		 -0.63 0.31 -0.31
33 AT1G08340 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 -0.63 0.34 -0.32
34 AT5G08139 RING/U-box superfamily protein -0.63 0.32 -0.3
35 AT1G50630 Protein of unknown function (DUF3537) -0.63 0.3 -0.3
36 AT1G20500 AMP-dependent synthetase and ligase family protein 0.63 0.31 -0.32
37 AT1G32000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G38190.1); Has 14 Blast hits to 14
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.63 0.32 -0.32
38 AT5G57690 diacylglycerol kinase 4 ATDGK4, diacylglycerol kinase 4 0.63 0.34 -0.31
39 AT4G35590 RWP-RK domain-containing protein RWP-RK domain-containing 5 0.63 0.31 -0.31
40 AT2G35390 Phosphoribosyltransferase family protein 0.63 0.34 -0.29
41 AT5G28700 transposable element gene 0.63 0.32 -0.32
42 AT2G25010 Aminotransferase-like, plant mobile domain family protein -0.62 0.33 -0.3
43 AT1G51270 structural molecules;transmembrane receptors;structural
molecules		 0.62 0.32 -0.3
44 AT5G04000 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.62 0.33 -0.31
45 AT4G00280 BEST Arabidopsis thaliana protein match is: Leucine-rich
repeat transmembrane protein kinase protein
(TAIR:AT2G19210.1); Has 19 Blast hits to 19 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.3 -0.32
46 AT5G66815 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.62 0.34 -0.29
47 AT1G68360 C2H2 and C2HC zinc fingers superfamily protein -0.62 0.33 -0.33
48 AT3G20730 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.32 -0.31
49 AT3G44510 alpha/beta-Hydrolases superfamily protein 0.61 0.29 -0.3
50 AT3G20470 glycine-rich protein 5 ATGRP-5, ATGRP5, GLYCINE-RICH
PROTEIN 5, glycine-rich protein 5		 -0.61 0.31 -0.31
51 AT1G12220 Disease resistance protein (CC-NBS-LRR class) family RESISTANT TO P. SYRINGAE 5 0.61 0.32 -0.3
52 AT3G02280 Flavodoxin family protein 0.61 0.32 -0.32
53 AT1G51270 structural molecules;transmembrane receptors;structural
molecules		 0.61 0.32 -0.31
54 AT5G53070 Ribosomal protein L9/RNase H1 0.61 0.31 -0.3
55 AT1G39430 transposable element gene 0.61 0.31 -0.31
56 AT3G63260 Protein kinase superfamily protein ATMRK1 0.61 0.32 -0.34
57 AT4G29560 CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E
protein, C-terminal (InterPro:IPR021025); Has 41 Blast hits
to 41 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 10; Fungi - 0; Plants - 27; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.61 0.33 -0.3
58 AT3G29635 HXXXD-type acyl-transferase family protein 0.61 0.33 -0.32
59 AT5G13600 Phototropic-responsive NPH3 family protein 0.61 0.31 -0.31
60 AT1G79640 Protein kinase superfamily protein 0.61 0.3 -0.33
61 AT5G06020 Plant self-incompatibility protein S1 family -0.61 0.32 -0.31
62 AT5G22680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
F-box/RNI-like superfamily protein (TAIR:AT5G22720.2); Has
65 Blast hits to 64 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.31 -0.32
63 AT2G38890 unknown protein; Has 58 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0;
Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.6 0.32 -0.31
64 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.32 -0.31
65 AT1G53940 GDSL-motif lipase 2 GDSL-motif lipase 2 0.6 0.3 -0.33
66 AT3G49740 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.31 -0.31
67 AT2G04420 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.6 0.3 -0.34
68 AT3G59630 diphthamide synthesis DPH2 family protein 0.6 0.3 -0.33
69 AT3G26140 Cellulase (glycosyl hydrolase family 5) protein 0.6 0.33 -0.3
70 AT3G29260 NAD(P)-binding Rossmann-fold superfamily protein -0.6 0.31 -0.32
71 AT5G35150 transposable element gene 0.6 0.33 -0.3
72 AT2G10920 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.32 -0.33
73 AT3G48940 Remorin family protein 0.59 0.33 -0.32
74 AT1G57570 Mannose-binding lectin superfamily protein 0.59 0.31 -0.3
75 AT4G07380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.59 0.3 -0.32
76 AT1G50080 BEST Arabidopsis thaliana protein match is: RNA-directed
DNA polymerase (reverse transcriptase)-related family
protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.59 0.32 -0.32
77 AT5G17340 Putative membrane lipoprotein 0.59 0.33 -0.32
78 AT5G38820 Transmembrane amino acid transporter family protein 0.59 0.32 -0.31
79 AT2G41590 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G25200.1); Has 221 Blast hits
to 217 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.31 -0.33
80 AT1G04560 AWPM-19-like family protein -0.59 0.31 -0.33
81 AT5G02570 Histone superfamily protein 0.59 0.3 -0.32
82 AT5G08090 unknown protein; Has 13 Blast hits to 13 proteins in 8
species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 2;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.33 -0.31
83 AT3G15310 transposable element gene 0.58 0.32 -0.32
84 AT1G34120 inositol polyphosphate 5-phosphatase I AT5P1, MYO-INOSITOL POLYPHOSPHATE
5-PHOSPHATASE 1, ATIP5PI, inositol
polyphosphate 5-phosphatase I		 -0.58 0.29 -0.31
85 AT1G52180 Aquaporin-like superfamily protein 0.58 0.3 -0.31
86 AT2G15260 RING/U-box superfamily protein 0.58 0.33 -0.34
87 AT2G20510 translocase inner membrane subunit 44-1 translocase inner membrane subunit
44-1, translocase inner membrane
subunit 44-1		 0.58 0.32 -0.3
88 AT3G07840 Pectin lyase-like superfamily protein 0.58 0.35 -0.32
89 AT3G24750 unknown protein; Has 25 Blast hits to 25 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.34 -0.32
90 AT5G46730 glycine-rich protein -0.57 0.32 -0.31
91 AT2G25500 Inosine triphosphate pyrophosphatase family protein -0.56 0.32 -0.32
92 AT3G50320 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.32 -0.3
93 AT5G57800 Fatty acid hydroxylase superfamily ECERIFERUM 3, FACELESS POLLEN 1,
WAX2, YRE		 -0.56 0.34 -0.29
94 AT3G47440 tonoplast intrinsic protein 5;1 tonoplast intrinsic protein 5;1 -0.56 0.33 -0.3
95 AT4G36600 Late embryogenesis abundant (LEA) protein -0.55 0.31 -0.31
96 AT1G15720 TRF-like 5 TRF-like 5 -0.55 0.29 -0.32
97 AT4G23450 RING/U-box superfamily protein ABA Insensitive RING Protein 1,
AtAIRP1		 -0.55 0.32 -0.32
98 AT5G42290 transcription activator-related -0.54 0.32 -0.31
99 AT3G27380 succinate dehydrogenase 2-1 succinate dehydrogenase 2-1 -0.54 0.31 -0.3
100 AT2G21740 Protein of unknown function (DUF1278) -0.54 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
101 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - -0.78 0.44 -0.43