AT2G24640 : ubiquitin-specific protease 19
Query Information
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AGICode AT2G24640
Description ubiquitin-specific protease 19
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G24640 ubiquitin-specific protease 19 ubiquitin-specific protease 19 1 0.29 -0.3
2 AT5G50300 Xanthine/uracil permease family protein ARABIDOPSIS THALIANA AZA-GUANINE
RESISTANT2, AZA-GUANINE RESISTANT2		 0.8 0.34 -0.36
3 AT5G61940 Ubiquitin carboxyl-terminal hydrolase-related protein 0.78 0.32 -0.3
4 AT2G07070 transposable element gene 0.78 0.3 -0.31
5 AT3G23800 selenium-binding protein 3 selenium-binding protein 3 0.78 0.29 -0.32
6 AT5G57420 indole-3-acetic acid inducible 33 indole-3-acetic acid inducible 33 0.77 0.35 -0.32
7 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 0.77 0.31 -0.33
8 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.76 0.31 -0.32
9 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.76 0.31 -0.32
10 AT5G06839 bZIP transcription factor family protein bZIP65, TGACG (TGA) motif-binding
protein 10		 0.76 0.31 -0.32
11 AT5G58050 SHV3-like 4 Glycerophosphodiester
phosphodiesterase (GDPD) like 6,
SHV3-like 4		 0.75 0.31 -0.32
12 AT3G22940 F-box associated ubiquitination effector family protein -0.75 0.31 -0.33
13 AT3G62310 RNA helicase family protein 0.74 0.3 -0.31
14 AT5G39620 RAB GTPase homolog G1 RAB GTPase homolog G1, RAB GTPase
homolog G1		 0.74 0.32 -0.33
15 AT5G60090 Protein kinase superfamily protein 0.73 0.31 -0.29
16 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.73 0.31 -0.33
17 AT4G20235 cytochrome P450, family 71, subfamily A, polypeptide 28 cytochrome P450, family 71,
subfamily A, polypeptide 28		 0.73 0.3 -0.32
18 AT3G24440 Fibronectin type III domain-containing protein VIN3-LIKE 1, VERNALIZATION 5 0.72 0.31 -0.33
19 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.72 0.33 -0.32
20 AT5G57720 AP2/B3-like transcriptional factor family protein 0.72 0.33 -0.33
21 AT2G34400 Pentatricopeptide repeat (PPR-like) superfamily protein 0.72 0.32 -0.32
22 AT2G24070 Family of unknown function (DUF566) QWRF domain containing 4 0.72 0.3 -0.3
23 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein 0.72 0.31 -0.32
24 AT5G61960 MEI2-like protein 1 MEI2-like protein 1, MEI2-like
protein 1		 0.72 0.32 -0.3
25 AT1G32850 ubiquitin-specific protease 11 ubiquitin-specific protease 11 0.72 0.32 -0.31
26 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 0.71 0.31 -0.3
27 AT3G56990 embryo sac development arrest 7 embryo sac development arrest 7 0.71 0.31 -0.31
28 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.71 0.32 -0.33
29 AT3G60760 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.71 0.31 -0.31
30 AT1G43140 Cullin family protein 0.71 0.3 -0.32
31 AT5G38260 Protein kinase superfamily protein 0.71 0.32 -0.31
32 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 0.71 0.31 -0.34
33 AT4G20770 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.33 -0.33
34 AT3G44530 homolog of histone chaperone HIRA homolog of histone chaperone HIRA 0.71 0.32 -0.31
35 AT4G01240 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.71 0.31 -0.32
36 AT3G49860 ADP-ribosylation factor-like A1B ADP-ribosylation factor-like A1B,
ADP-ribosylation factor-like A1B		 0.71 0.31 -0.33
37 AT5G05520 Outer membrane OMP85 family protein 0.7 0.33 -0.34
38 AT3G49710 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.33 -0.33
39 AT5G19520 mechanosensitive channel of small conductance-like 9 ATMSL9, mechanosensitive channel
of small conductance-like 9		 0.7 0.3 -0.29
40 AT5G64690 neurofilament triplet H protein-related 0.7 0.32 -0.33
41 AT3G51680 NAD(P)-binding Rossmann-fold superfamily protein AtSDR2, short-chain
dehydrogenase/reductase 2		 0.7 0.3 -0.32
42 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 0.7 0.3 -0.31
43 AT4G19000 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS2 (FROM
YEAST INTERACTS WITH SPT6), IWS2		 0.7 0.31 -0.31
44 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 0.69 0.32 -0.31
45 AT4G18890 BES1/BZR1 homolog 3 BES1/BZR1 homolog 3 0.69 0.33 -0.35
46 AT5G41180 leucine-rich repeat transmembrane protein kinase family
protein		 0.69 0.3 -0.33
47 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.69 0.33 -0.31
48 AT3G09090 defective in exine formation protein (DEX1) DEFECTIVE IN EXINE FORMATION 1 0.69 0.31 -0.36
49 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 0.69 0.32 -0.31
50 AT5G64110 Peroxidase superfamily protein -0.69 0.32 -0.34
51 AT5G10280 myb domain protein 92 ATMYB64, myb domain protein 92,
myb domain protein 92		 0.69 0.3 -0.33
52 AT3G43790 zinc induced facilitator-like 2 zinc induced facilitator-like 2 -0.69 0.33 -0.32
53 AT4G09100 RING/U-box superfamily protein 0.69 0.3 -0.3
54 AT5G36950 DegP protease 10 DegP protease 10 0.69 0.31 -0.31
55 AT1G74820 RmlC-like cupins superfamily protein 0.69 0.31 -0.31
56 AT3G27150 Galactose oxidase/kelch repeat superfamily protein 0.69 0.31 -0.35
57 AT5G37970 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.69 0.31 -0.3
58 AT1G78890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.69 0.31 -0.34
59 AT2G21710 Mitochondrial transcription termination factor family
protein		 embryo defective 2219 0.68 0.34 -0.33
60 AT2G38960 endoplasmic reticulum oxidoreductins 2 endoplasmic reticulum
oxidoreductins 2, endoplasmic
reticulum oxidoreductins 2		 0.68 0.32 -0.33
61 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family
protein		 0.68 0.3 -0.32
62 AT1G70180 Sterile alpha motif (SAM) domain-containing protein 0.68 0.29 -0.29
63 AT5G65170 VQ motif-containing protein 0.68 0.32 -0.31
64 AT5G08305 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.32 -0.31
65 AT1G55820 Kinase-related protein of unknown function (DUF1296) 0.68 0.32 -0.31
66 AT2G30840 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.67 0.32 -0.32
67 AT5G13560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast
hits to 8846 proteins in 811 species: Archae - 217;
Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants -
528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI
BLink).		 0.67 0.3 -0.32
68 AT1G26370 RNA helicase family protein 0.67 0.32 -0.3
69 AT5G51890 Peroxidase superfamily protein -0.67 0.31 -0.33
70 AT1G53940 GDSL-motif lipase 2 GDSL-motif lipase 2 0.67 0.32 -0.3
71 AT5G50500 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.67 0.31 -0.32
72 AT1G46912 F-box associated ubiquitination effector family protein 0.67 0.31 -0.32
73 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.67 0.31 -0.34
74 AT3G44460 Basic-leucine zipper (bZIP) transcription factor family
protein		 basic leucine zipper transcription
factor 67, DPBF2		 0.67 0.3 -0.31
75 AT2G39380 exocyst subunit exo70 family protein H2 exocyst subunit exo70 family
protein H2, exocyst subunit exo70
family protein H2		 0.67 0.3 -0.35
76 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 -0.67 0.32 -0.31
77 AT4G16060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 42
Blast hits to 42 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink).		 -0.67 0.33 -0.31
78 AT5G23840 MD-2-related lipid recognition domain-containing protein 0.67 0.32 -0.31
79 AT3G43120 SAUR-like auxin-responsive protein family 0.67 0.32 -0.29
80 AT5G01310 APRATAXIN-like APRATAXIN-like 0.67 0.32 -0.33
81 AT4G00520 Acyl-CoA thioesterase family protein -0.66 0.33 -0.3
82 AT3G10200 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.66 0.32 -0.32
83 AT5G23750 Remorin family protein -0.66 0.3 -0.32
84 AT3G05960 sugar transporter 6 SUGAR TRANSPORTER 6, sugar
transporter 6		 0.66 0.29 -0.32
85 AT2G34700 Pollen Ole e 1 allergen and extensin family protein 0.66 0.28 -0.33
86 AT1G44910 pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A,
pre-mRNA-processing protein 40A		 0.66 0.31 -0.31
87 AT1G30990 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.66 0.31 -0.32
88 AT5G56460 Protein kinase superfamily protein 0.66 0.31 -0.31
89 AT4G03510 RING membrane-anchor 1 ATRMA1, RING membrane-anchor 1 -0.66 0.29 -0.34
90 AT3G47850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 12 growth stages; Has 57 Blast hits to 57 proteins
in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12;
Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7
(source: NCBI BLink).		 -0.66 0.33 -0.31
91 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 -0.66 0.3 -0.32
92 AT3G18230 Octicosapeptide/Phox/Bem1p family protein 0.66 0.32 -0.32
93 AT5G17690 like heterochromatin protein (LHP1) AtLHP1, LIKE HETEROCHROMATIN
PROTEIN 1, TERMINAL FLOWER 2		 0.65 0.32 -0.3
94 AT1G63120 RHOMBOID-like 2 RHOMBOID-like 2, RHOMBOID-like 2 -0.65 0.33 -0.31
95 AT1G14390 Leucine-rich repeat protein kinase family protein 0.65 0.32 -0.3
96 AT5G16300 Vps51/Vps67 family (components of vesicular transport)
protein		 0.65 0.32 -0.31
97 AT1G09020 homolog of yeast sucrose nonfermenting 4 ATSNF4, homolog of yeast sucrose
nonfermenting 4		 0.65 0.3 -0.3
98 AT5G40360 myb domain protein 115 myb domain protein 115, myb domain
protein 115		 0.65 0.34 -0.3
99 AT2G41060 RNA-binding (RRM/RBD/RNP motifs) family protein 0.65 0.32 -0.31
100 AT3G59630 diphthamide synthesis DPH2 family protein 0.65 0.33 -0.34
101 AT3G52460 hydroxyproline-rich glycoprotein family protein 0.65 0.33 -0.29
102 AT2G20770 GCR2-like 2 GCR2-like 2 -0.65 0.33 -0.29
103 AT1G41797 transposable element gene -0.65 0.31 -0.35
104 AT5G42340 Plant U-Box 15 Plant U-Box 15 -0.64 0.3 -0.31
105 AT4G37220 Cold acclimation protein WCOR413 family -0.64 0.31 -0.33
106 AT3G21660 UBX domain-containing protein -0.64 0.33 -0.32
107 AT1G27600 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 Homolog,
IRREGULAR XYLEM 9-LIKE		 -0.64 0.31 -0.33
108 AT3G17950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.64 0.3 -0.33
109 AT3G21550 DUF679 domain membrane protein 2 Arabidopsis thaliana DUF679 domain
membrane protein 2, DUF679 domain
membrane protein 2		 -0.64 0.31 -0.32
110 AT4G17690 Peroxidase superfamily protein -0.63 0.3 -0.31
111 AT4G35170 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.63 0.3 -0.33
112 AT1G21220 transposable element gene -0.63 0.32 -0.31
113 AT4G36150 Disease resistance protein (TIR-NBS-LRR class) family -0.63 0.3 -0.29
114 AT1G01670 RING/U-box superfamily protein -0.63 0.31 -0.33
115 AT4G27470 RING membrane-anchor 3 ATRMA3, RING membrane-anchor 3 -0.63 0.31 -0.31
116 AT1G61410 DNA double-strand break repair and VJ recombination XRCC4 -0.63 0.32 -0.31
117 AT1G20850 xylem cysteine peptidase 2 xylem cysteine peptidase 2 -0.63 0.32 -0.3
118 AT3G26125 cytochrome P450, family 86, subfamily C, polypeptide 2 cytochrome P450, family 86,
subfamily C, polypeptide 2		 -0.63 0.31 -0.33
119 AT4G07740 Protein of unknown function (DUF3287) -0.62 0.32 -0.31
120 AT2G40600 appr-1-p processing enzyme family protein -0.62 0.32 -0.32
121 AT2G18340 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 -0.62 0.3 -0.33
122 AT1G72960 Root hair defective 3 GTP-binding protein (RHD3) -0.62 0.31 -0.32
123 AT5G51900 Cytochrome P450 family protein -0.62 0.33 -0.31
124 AT1G51880 root hair specific 6 root hair specific 6 -0.62 0.31 -0.34
125 AT3G26740 CCR-like CCR-like -0.62 0.32 -0.31
126 AT4G18720 Transcription factor IIS protein -0.61 0.33 -0.31
127 AT2G24010 serine carboxypeptidase-like 23 serine carboxypeptidase-like 23 -0.61 0.3 -0.33
128 AT4G33810 Glycosyl hydrolase superfamily protein -0.61 0.3 -0.32
129 AT3G24750 unknown protein; Has 25 Blast hits to 25 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.3 -0.31
130 AT5G37300 O-acyltransferase (WSD1-like) family protein WSD1 -0.61 0.33 -0.31
131 AT1G75930 extracellular lipase 6 extracellular lipase 6 -0.61 0.31 -0.31
132 AT2G01700 transposable element gene -0.61 0.33 -0.3
133 AT1G11380 PLAC8 family protein -0.61 0.32 -0.31
134 AT1G65090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits
to 1033 proteins in 192 species: Archae - 0; Bacteria - 61;
Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42;
Other Eukaryotes - 598 (source: NCBI BLink).		 -0.61 0.32 -0.33
135 AT3G62020 germin-like protein 10 germin-like protein 10 -0.61 0.3 -0.31
136 AT5G47390 myb-like transcription factor family protein -0.61 0.32 -0.33
137 AT5G10090 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 13 -0.61 0.32 -0.32
138 AT1G35310 MLP-like protein 168 MLP-like protein 168 -0.6 0.31 -0.34
139 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.32 -0.32
140 AT2G40815 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.6 0.31 -0.3
141 AT1G27160 valyl-tRNA synthetase / valine--tRNA ligase-related -0.6 0.33 -0.32
142 AT2G32690 glycine-rich protein 23 GLYCINE-RICH PROTEIN 23,
glycine-rich protein 23		 -0.6 0.3 -0.3
143 AT1G71090 Auxin efflux carrier family protein -0.6 0.3 -0.31
144 AT1G36810 transposable element gene -0.6 0.32 -0.32
145 AT1G54790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.6 0.32 -0.3
146 AT4G00630 K+ efflux antiporter 2 ATKEA2, K+ efflux antiporter 2 -0.59 0.32 -0.33
147 AT1G79970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF581)
(TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.32 -0.29
148 AT3G59940 Galactose oxidase/kelch repeat superfamily protein -0.59 0.34 -0.32
149 AT3G04170 RmlC-like cupins superfamily protein -0.59 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
150 C0145 Maltotetraose - Maltotetraose starch degradation II 0.84 0.47 -0.43 C0145
151 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		-0.76 0.48 -0.42 C0228
152 C0065 Cellobiose D-(+)-Cellobiose Cellobiose xyloglucan biosynthesis,
starch degradation I 		0.66 0.32 -0.33 C0065