AT2G36990 : SIGMA FACTOR 6
Query Information
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AGICode AT2G36990
Description RNApolymerase sigma-subunit F
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 1 0.34 -0.31
2 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.93 0.31 -0.31
3 AT4G37510 Ribonuclease III family protein 0.93 0.32 -0.31
4 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.92 0.32 -0.3
5 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 0.92 0.32 -0.31
6 AT3G23700 Nucleic acid-binding proteins superfamily 0.92 0.31 -0.31
7 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.92 0.34 -0.32
8 AT4G26370 antitermination NusB domain-containing protein 0.92 0.31 -0.31
9 AT4G17740 Peptidase S41 family protein 0.91 0.31 -0.31
10 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.91 0.31 -0.3
11 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.91 0.31 -0.3
12 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.91 0.32 -0.31
13 AT1G16880 uridylyltransferase-related ACT domain repeats 11 0.9 0.31 -0.32
14 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.9 0.32 -0.31
15 AT2G24060 Translation initiation factor 3 protein 0.9 0.32 -0.32
16 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.9 0.32 -0.28
17 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.9 0.32 -0.32
18 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.9 0.32 -0.32
19 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.89 0.33 -0.31
20 AT4G34290 SWIB/MDM2 domain superfamily protein 0.89 0.32 -0.32
21 AT5G66470 RNA binding;GTP binding 0.89 0.32 -0.32
22 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.89 0.31 -0.32
23 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.89 0.33 -0.33
24 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.89 0.32 -0.32
25 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.89 0.31 -0.31
26 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.89 0.3 -0.32
27 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.89 0.31 -0.31
28 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.31 -0.32
29 AT4G25990 CCT motif family protein CIL 0.89 0.31 -0.32
30 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.88 0.33 -0.33
31 AT2G43030 Ribosomal protein L3 family protein 0.88 0.32 -0.32
32 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.88 0.33 -0.3
33 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.88 0.31 -0.33
34 AT1G06190 Rho termination factor 0.87 0.31 -0.32
35 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.87 0.34 -0.31
36 AT1G08550 non-photochemical quenching 1 ARABIDOPSIS VIOLAXANTHIN
DE-EPOXIDASE 1, non-photochemical
quenching 1		 0.87 0.31 -0.3
37 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.87 0.32 -0.33
38 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.87 0.33 -0.31
39 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.87 0.33 -0.31
40 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.87 0.33 -0.32
41 AT2G39670 Radical SAM superfamily protein 0.87 0.31 -0.29
42 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.87 0.3 -0.31
43 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.87 0.32 -0.32
44 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.87 0.33 -0.32
45 AT5G41050 Pollen Ole e 1 allergen and extensin family protein 0.87 0.32 -0.31
46 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.87 0.34 -0.32
47 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.87 0.33 -0.32
48 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.87 0.34 -0.32
49 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.87 0.31 -0.3
50 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.31 -0.33
51 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.87 0.33 -0.31
52 AT1G56050 GTP-binding protein-related 0.86 0.31 -0.34
53 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.86 0.31 -0.3
54 AT5G48220 Aldolase-type TIM barrel family protein 0.86 0.3 -0.33
55 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.86 0.31 -0.3
56 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.86 0.33 -0.3
57 AT1G26230 TCP-1/cpn60 chaperonin family protein chaperonin-60beta4 0.86 0.31 -0.34
58 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.86 0.32 -0.33
59 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.86 0.32 -0.31
60 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.86 0.31 -0.32
61 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6		 0.86 0.31 -0.33
62 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.86 0.32 -0.31
63 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.86 0.31 -0.31
64 AT5G63050 embryo defective 2759 embryo defective 2759 0.86 0.3 -0.32
65 AT5G20630 germin 3 ARABIDOPSIS THALIANA GERMIN 3,
germin 3, GERMIN-LIKE PROTEIN 3,
GLP3A, GLP3B		 0.86 0.3 -0.29
66 AT1G55670 photosystem I subunit G photosystem I subunit G 0.86 0.32 -0.34
67 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 0.85 0.32 -0.35
68 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.85 0.32 -0.31
69 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.85 0.33 -0.32
70 AT5G50280 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1006 0.85 0.31 -0.31
71 AT1G80480 plastid transcriptionally active 17 plastid transcriptionally active
17		 0.85 0.31 -0.34
72 AT5G08050 Protein of unknown function (DUF1118) 0.85 0.3 -0.33
73 AT2G18940 Tetratricopeptide repeat (TPR)-like superfamily protein 0.85 0.31 -0.32
74 AT1G72610 germin-like protein 1 A. THALIANA GERMIN-LIKE PROTEIN 1,
germin-like protein 1, GERMIN-LIKE
PROTEIN 1		 0.85 0.32 -0.33
75 AT3G21300 RNA methyltransferase family protein 0.85 0.34 -0.33
76 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.34 -0.32
77 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.85 0.32 -0.31
78 AT1G70730 Phosphoglucomutase/phosphomannomutase family protein phosphoglucomutase 2 0.85 0.3 -0.32
79 AT5G09240 ssDNA-binding transcriptional regulator 0.85 0.31 -0.34
80 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.85 0.3 -0.3
81 AT2G14880 SWIB/MDM2 domain superfamily protein 0.85 0.33 -0.36
82 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.85 0.3 -0.29
83 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.85 0.32 -0.31
84 AT3G45010 serine carboxypeptidase-like 48 serine carboxypeptidase-like 48 -0.83 0.34 -0.3
85 AT3G25290 Auxin-responsive family protein -0.83 0.3 -0.31
86 AT2G17500 Auxin efflux carrier family protein -0.81 0.3 -0.31
87 AT5G24430 Calcium-dependent protein kinase (CDPK) family protein -0.81 0.32 -0.33
88 AT1G07750 RmlC-like cupins superfamily protein -0.8 0.29 -0.3
89 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.8 0.3 -0.31
90 AT1G77370 Glutaredoxin family protein -0.78 0.31 -0.31
91 AT3G25010 receptor like protein 41 receptor like protein 41, receptor
like protein 41		 -0.78 0.33 -0.32
92 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.78 0.31 -0.32
93 AT4G22920 non-yellowing 1 NON-YELLOWING 1, NON-YELLOWING 1 -0.78 0.31 -0.35
94 AT3G56310 Melibiase family protein -0.78 0.31 -0.33
95 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.78 0.31 -0.31
96 AT1G54340 isocitrate dehydrogenase isocitrate dehydrogenase -0.77 0.31 -0.31
97 AT1G74020 strictosidine synthase 2 strictosidine synthase 2 -0.77 0.32 -0.34
98 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.77 0.33 -0.33
99 AT1G78660 gamma-glutamyl hydrolase 1 gamma-glutamyl hydrolase 1,
gamma-glutamyl hydrolase 1		 -0.77 0.33 -0.32
100 AT2G37760 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C8		 -0.77 0.34 -0.33
101 AT1G66760 MATE efflux family protein -0.76 0.31 -0.31
102 AT5G64370 beta-ureidopropionase beta-ureidopropionase, PYRIMIDINE
3		 -0.76 0.32 -0.33
103 AT5G02170 Transmembrane amino acid transporter family protein -0.76 0.32 -0.32
104 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.76 0.33 -0.32
105 AT1G05620 uridine-ribohydrolase 2 nucleoside hydrolase 2,
uridine-ribohydrolase 2		 -0.76 0.32 -0.34
106 AT3G44320 nitrilase 3 NITRILASE 3, nitrilase 3 -0.76 0.32 -0.35
107 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.75 0.3 -0.31
108 AT1G55920 serine acetyltransferase 2;1 serine acetyltransferase 2;1,
SERINE ACETYLTRANSFERASE 1, SERINE
ACETYLTRANSFERASE 5, serine
acetyltransferase 2;1		 -0.75 0.29 -0.32
109 AT3G59140 multidrug resistance-associated protein 14 ATP-binding cassette C10,
multidrug resistance-associated
protein 14, multidrug
resistance-associated protein 14		 -0.75 0.28 -0.32
110 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.75 0.31 -0.29
111 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.75 0.33 -0.32
112 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22		 -0.74 0.31 -0.31
113 AT1G18260 HCP-like superfamily protein EMS-mutagenized bri1 suppressor 5,
HRD3A		 -0.74 0.32 -0.35
114 AT4G10050 esterase/lipase/thioesterase family protein -0.74 0.32 -0.32
115 AT1G62660 Glycosyl hydrolases family 32 protein -0.74 0.3 -0.33
116 AT4G02360 Protein of unknown function, DUF538 -0.74 0.32 -0.31
117 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.32 -0.3
118 AT5G63840 Glycosyl hydrolases family 31 protein PRIORITY IN SWEET LIFE 5, RADIAL
SWELLING 3		 -0.73 0.31 -0.3
119 AT5G23580 calmodulin-like domain protein kinase 9 ARABIDOPSIS THALIANA
CALMODULIN-LIKE DOMAIN PROTEIN
KINASE 9, ATCPK12, calmodulin-like
domain protein kinase 9,
CALCIUM-DEPENDENT PROTEIN KINASE
12		 -0.73 0.31 -0.3
120 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.73 0.33 -0.33
121 AT1G17745 D-3-phosphoglycerate dehydrogenase 3-phosphoglycerate dehydrogenase -0.73 0.34 -0.33
122 AT1G68300 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.73 0.32 -0.32
123 AT5G17650 glycine/proline-rich protein -0.73 0.32 -0.35
124 AT3G11660 NDR1/HIN1-like 1 NDR1/HIN1-like 1 -0.73 0.32 -0.31
125 AT4G07390 Mannose-P-dolichol utilization defect 1 protein -0.73 0.32 -0.32
126 AT1G06620 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.73 0.31 -0.32
127 AT4G09030 arabinogalactan protein 10 arabinogalactan protein 10,
ATAGP10		 -0.73 0.32 -0.3
128 AT5G10300 methyl esterase 5 AtHNL, ARABIDOPSIS THALIANA METHYL
ESTERASE 5, HYDROXYNITRILE LYASE,
methyl esterase 5		 -0.73 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.78 0.44 -0.42 C0120