AT2G42870 : HELIX-LOOP-HELIX 1
Query Information
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AGICode AT2G42870
Description phy rapidly regulated 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G42870 phy rapidly regulated 1 HELIX-LOOP-HELIX 1, PHY RAPIDLY
REGULATED 1		 1 0.32 -0.33
2 AT2G17880 Chaperone DnaJ-domain superfamily protein 0.76 0.31 -0.33
3 AT2G36400 growth-regulating factor 3 growth-regulating factor 3,
growth-regulating factor 3		 0.75 0.31 -0.31
4 AT5G28880 transposable element gene -0.72 0.32 -0.3
5 AT5G45380 solute:sodium symporters;urea transmembrane transporters ATDUR3, DEGRADATION OF UREA 3 -0.7 0.3 -0.31
6 AT3G61640 arabinogalactan protein 20 arabinogalactan protein 20,
Arabinogalactan protein 20		 0.7 0.3 -0.33
7 AT2G32710 Cyclin-dependent kinase inhibitor family protein CYCLIN-DEPENDENT KINASE INHIBITOR
2, INTERACTORS OF CDC2 KINASE 7,
KRP4, KIP-RELATED PROTEIN 4		 0.68 0.31 -0.33
8 AT5G08520 Duplicated homeodomain-like superfamily protein 0.68 0.3 -0.31
9 AT4G17245 RING/U-box superfamily protein 0.67 0.32 -0.31
10 AT5G02150 Fes1C Fes1C 0.66 0.33 -0.29
11 AT5G14180 Myzus persicae-induced lipase 1 Myzus persicae-induced lipase 1 -0.66 0.3 -0.34
12 AT2G39710 Eukaryotic aspartyl protease family protein -0.66 0.3 -0.31
13 AT4G10910 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.65 0.34 -0.29
14 AT3G01490 Protein kinase superfamily protein 0.65 0.32 -0.33
15 AT1G45170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits
to 62 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.31 -0.32
16 AT2G46370 Auxin-responsive GH3 family protein FAR-RED INSENSITIVE 219, JASMONATE
RESISTANT 1		 -0.64 0.33 -0.3
17 AT4G34580 Sec14p-like phosphatidylinositol transfer family protein CAN OF WORMS1, SHORT ROOT HAIR 1 0.64 0.32 -0.31
18 AT3G60530 GATA transcription factor 4 GATA transcription factor 4 0.64 0.3 -0.32
19 AT1G12230 Aldolase superfamily protein 0.64 0.31 -0.3
20 AT4G36410 ubiquitin-conjugating enzyme 17 ubiquitin-conjugating enzyme 17 0.63 0.32 -0.3
21 AT2G20840 Secretory carrier membrane protein (SCAMP) family protein 0.63 0.32 -0.29
22 AT3G57630 exostosin family protein -0.63 0.32 -0.32
23 AT2G35740 nositol transporter 3 NOSITOL TRANSPORTER 3, nositol
transporter 3		 0.63 0.32 -0.31
24 AT3G11760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.29 -0.34
25 AT4G18710 Protein kinase superfamily protein SHAGGY-LIKE KINASE 21,
BRASSINOSTEROID-INSENSITIVE 2,
DWARF 12, SHAGGY-LIKE KINASE 21,
ULTRACURVATA 1		 0.62 0.31 -0.33
26 AT4G05330 ARF-GAP domain 13 ARF-GAP domain 13 0.62 0.32 -0.33
27 AT5G01150 Protein of unknown function (DUF674) 0.62 0.33 -0.31
28 AT2G20240 Protein of unknown function (DUF3741) 0.61 0.31 -0.3
29 AT2G19130 S-locus lectin protein kinase family protein -0.61 0.32 -0.31
30 AT3G53290 cytochrome P450, family 71, subfamily B, polypeptide 30
pseudogene		 cytochrome P450, family 71,
subfamily B, polypeptide 30
pseudogene		 0.61 0.31 -0.32
31 AT5G21170 5'-AMP-activated protein kinase beta-2 subunit protein AKINBETA1 0.61 0.31 -0.29
32 AT1G03687 DTW domain-containing protein 0.6 0.3 -0.32
33 AT3G60600 vesicle associated protein (AT)VAP, vesicle associated
protein, VAP27,
VAMP/SYNAPTOBREVIN-ASSOCIATED
PROTEIN 27-1		 0.6 0.3 -0.31
34 AT2G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G39860.2); Has 247 Blast hits
to 231 proteins in 42 species: Archae - 0; Bacteria - 17;
Metazoa - 14; Fungi - 5; Plants - 145; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).		 0.6 0.33 -0.32
35 AT5G51910 TCP family transcription factor 0.6 0.35 -0.32
36 AT2G19180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 64 Blast hits
to 64 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.3 -0.32
37 AT2G06960 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.59 0.33 -0.32
38 AT5G57810 tetraspanin15 tetraspanin15 -0.59 0.31 -0.33
39 AT4G23260 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 cysteine-rich RLK (RECEPTOR-like
protein kinase) 18		 -0.59 0.29 -0.28
40 AT3G10720 Plant invertase/pectin methylesterase inhibitor superfamily 0.59 0.32 -0.32
41 AT1G33660 peroxidase family protein -0.59 0.32 -0.33
42 AT5G15330 SPX domain gene 4 ARABIDOPSIS THALIANA SPX DOMAIN
GENE 4, SPX domain gene 4		 0.59 0.34 -0.3
43 AT1G21830 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF740 (InterPro:IPR008004); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.34 -0.32
44 AT2G17260 glutamate receptor 2 ATGLR2, ATGLR3.1, glutamate
receptor 2, GLR3.1		 -0.59 0.29 -0.33
45 AT4G04490 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 cysteine-rich RLK (RECEPTOR-like
protein kinase) 36		 -0.58 0.31 -0.32
46 AT1G03470 Kinase interacting (KIP1-like) family protein 0.58 0.32 -0.31
47 AT3G15370 expansin 12 ATEXP12, expansin 12, ATHEXP ALPHA
1.24, EXPANSIN 12, expansin 12		 0.58 0.3 -0.3
48 AT5G07040 RING/U-box superfamily protein 0.58 0.32 -0.32
49 AT4G02440 F-box family protein EMPFINDLICHER IM DUNKELROTEN LICHT
1		 0.58 0.31 -0.33
50 AT1G42700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to cold; LOCATED IN: nucleus; BEST Arabidopsis
thaliana protein match is: Plant transposase (Ptta/En/Spm
family) (TAIR:AT1G40087.1); Has 10 Blast hits to 10
proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.34 -0.35
51 AT2G12170 BEST Arabidopsis thaliana protein match is: Transcriptional
factor B3 family protein (TAIR:AT2G24645.1); Has 18 Blast
hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.57 0.33 -0.31
52 AT2G26280 CTC-interacting domain 7 CTC-interacting domain 7 -0.57 0.31 -0.32
53 AT1G49850 RING/U-box superfamily protein 0.57 0.32 -0.31
54 AT1G33460 transposable element gene 0.57 0.33 -0.31
55 AT4G18540 unknown protein; Has 209 Blast hits to 205 proteins in 54
species: Archae - 0; Bacteria - 17; Metazoa - 2; Fungi -
150; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.57 0.32 -0.33
56 AT4G04500 cysteine-rich RLK (RECEPTOR-like protein kinase) 37 cysteine-rich RLK (RECEPTOR-like
protein kinase) 37		 -0.57 0.3 -0.32
57 AT1G15700 ATPase, F1 complex, gamma subunit protein ATPC2 0.57 0.29 -0.33
58 AT1G08660 MALE GAMETOPHYTE DEFECTIVE 2 MALE GAMETOPHYTE DEFECTIVE 2 0.56 0.32 -0.32
59 AT3G30730 unknown protein; Has 59 Blast hits to 59 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.56 0.3 -0.3
60 AT2G18420 Gibberellin-regulated family protein -0.56 0.31 -0.32
61 AT5G55560 Protein kinase superfamily protein -0.56 0.29 -0.3
62 AT2G21460 transposable element gene 0.56 0.3 -0.32
63 AT2G45780 other RNA -0.56 0.31 -0.3
64 AT5G17980 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.56 0.32 -0.32
65 AT1G56150 SAUR-like auxin-responsive protein family 0.56 0.31 -0.32
66 AT1G74310 heat shock protein 101 heat shock protein 101, HOT1, heat
shock protein 101		 -0.55 0.33 -0.31
67 AT5G10180 slufate transporter 2;1 ARABIDOPSIS SULFATE TRANSPORTER
68, sulfate transporter 2;1		 -0.55 0.33 -0.32
68 AT4G36460 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.32 -0.28
69 AT2G03460 Galactose oxidase/kelch repeat superfamily protein -0.54 0.32 -0.31
70 AT2G19630 F-box and associated interaction domains-containing protein -0.54 0.31 -0.3
71 AT4G02160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G61710.1); Has 35 Blast hits
to 35 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.33 -0.33
72 AT2G29880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G27260.1); Has 260 Blast hits
to 212 proteins in 20 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 10; Plants - 240; Viruses - 0; Other
Eukaryotes - 9 (source: NCBI BLink).		 -0.53 0.3 -0.3
73 AT3G22930 calmodulin-like 11 calmodulin-like 11 -0.52 0.33 -0.33
74 AT2G46980 unknown protein; Has 1165 Blast hits to 947 proteins in 158
species: Archae - 0; Bacteria - 33; Metazoa - 631; Fungi -
90; Plants - 54; Viruses - 14; Other Eukaryotes - 343
(source: NCBI BLink).		 -0.52 0.32 -0.32
75 AT1G29050 TRICHOME BIREFRINGENCE-LIKE 38 TRICHOME BIREFRINGENCE-LIKE 38 -0.52 0.28 -0.29
76 AT3G45530 Cysteine/Histidine-rich C1 domain family protein -0.52 0.31 -0.34
77 AT1G08250 arogenate dehydratase 6 arogenate dehydratase 6,
Arabidopsis thaliana arogenate
dehydratase 6		 -0.52 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
78 C0020 1-Aminocyclopropane-1-carboxylic acid - 1-Aminocyclopropane-1-carboxylate jasmonoyl-amino acid conjugates biosynthesis I,
ethylene biosynthesis I (plants),
methionine salvage pathway 		0.57 0.44 -0.45 C0020