AT2G27960 : cyclin-dependent kinase-subunit 1
Query Information
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AGICode AT2G27960
Description cyclin-dependent kinase-subunit 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G27960 cyclin-dependent kinase-subunit 1 cyclin-dependent kinase-subunit 1,
CKS1AT		 1 0.3 -0.31
2 AT2G36550 CONTAINS InterPro DOMAIN/s: NLI interacting factor
(InterPro:IPR004274); BEST Arabidopsis thaliana protein
match is: Haloacid dehalogenase-like hydrolase (HAD)
superfamily protein (TAIR:AT2G36540.1); Has 91 Blast hits
to 91 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 2; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.77 0.3 -0.31
3 AT5G61500 autophagy 3 (APG3) ATATG3, ATG3 0.77 0.31 -0.32
4 AT1G15460 HCO3- transporter family ARABIDOPSIS THALIANA REQUIRES HIGH
BORON 4, REQUIRES HIGH BORON 4		 -0.76 0.33 -0.32
5 AT3G10210 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 0.76 0.31 -0.33
6 AT4G32560 paramyosin-related 0.75 0.31 -0.31
7 AT4G25770 alpha/beta-Hydrolases superfamily protein 0.74 0.32 -0.31
8 AT2G36060 MMS ZWEI homologue 3 MMS ZWEI homologue 3, UBIQUITIN E2
VARIANT 1C		 0.73 0.34 -0.3
9 AT4G20410 gamma-soluble NSF attachment protein GAMMA-SOLUBLE NSF ATTACHMENT
PROTEIN, gamma-soluble NSF
attachment protein		 0.73 0.33 -0.31
10 AT2G29600 Galactose oxidase/kelch repeat superfamily protein 0.73 0.33 -0.31
11 AT3G13820 F-box and associated interaction domains-containing protein -0.72 0.32 -0.31
12 AT2G47200 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.72 0.31 -0.32
13 AT5G24520 Transducin/WD40 repeat-like superfamily protein TRANSPARENT TESTA GLABRA 1, TTG,
TRANSPARENT TESTA GLABRA 1,
UNARMED 23		 0.71 0.31 -0.32
14 AT5G63540 Domain of unknown function (DUF1767) ATRMI1, BLAP75, RECQ MEDIATED
INSTABILITY 1		 -0.71 0.31 -0.29
15 AT1G39430 transposable element gene -0.71 0.29 -0.33
16 AT5G03060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11100.2); Has 14506 Blast
hits to 10808 proteins in 1083 species: Archae - 280;
Bacteria - 2737; Metazoa - 4707; Fungi - 940; Plants - 571;
Viruses - 106; Other Eukaryotes - 5165 (source: NCBI
BLink).		 -0.7 0.31 -0.35
17 AT1G14850 nucleoporin 155 nucleoporin 155 -0.7 0.33 -0.31
18 AT3G10850 Metallo-hydrolase/oxidoreductase superfamily protein GLYOXALASE 2-2, GLY2 0.7 0.31 -0.29
19 AT2G28250 Protein kinase superfamily protein NCRK -0.7 0.31 -0.3
20 AT4G10330 glycine-rich protein 0.7 0.32 -0.31
21 AT2G30120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits
to 241 proteins in 42 species: Archae - 4; Bacteria - 15;
Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other
Eukaryotes - 49 (source: NCBI BLink).		 0.7 0.3 -0.33
22 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 0.7 0.32 -0.29
23 AT3G52090 DNA-directed RNA polymerase, RBP11-like ATRPB13.6, NRPB11, NRPD11, NRPE11 0.7 0.3 -0.31
24 AT1G48620 high mobility group A5 high mobility group A5 0.7 0.29 -0.28
25 AT1G11930 Predicted pyridoxal phosphate-dependent enzyme, YBL036C
type		 0.69 0.33 -0.33
26 AT1G55300 TBP-associated factor 7 TBP-associated factor 7 0.69 0.3 -0.31
27 AT3G21800 UDP-glucosyl transferase 71B8 UDP-glucosyl transferase 71B8 -0.69 0.33 -0.31
28 AT1G60430 actin-related protein C3 actin-related protein C3 0.69 0.29 -0.32
29 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 -0.69 0.31 -0.31
30 AT3G47850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 12 growth stages; Has 57 Blast hits to 57 proteins
in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12;
Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7
(source: NCBI BLink).		 0.69 0.32 -0.32
31 AT1G22290 14-3-3 family protein -0.69 0.3 -0.33
32 AT5G22280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.33 -0.29
33 AT1G17250 receptor like protein 3 receptor like protein 3, receptor
like protein 3		 -0.69 0.32 -0.33
34 AT1G23260 MMS ZWEI homologue 1 MMS ZWEI homologue 1, UBIQUITIN E2
VARIANT 1A		 0.69 0.34 -0.32
35 AT4G15955 alpha/beta-Hydrolases superfamily protein 0.69 0.32 -0.31
36 AT3G55150 exocyst subunit exo70 family protein H1 exocyst subunit exo70 family
protein H1, exocyst subunit exo70
family protein H1		 -0.68 0.3 -0.31
37 AT4G38170 FAR1-related sequence 9 FAR1-related sequence 9 -0.68 0.33 -0.32
38 AT1G54210 Ubiquitin-like superfamily protein AUTOPHAGY 12, ATATG12, AUTOPHAGY
12 A		 0.68 0.3 -0.33
39 AT5G49550 Putative homolog of mammalian BLOC-1 Subunit 2. Protein -
protein interaction with BLOS1.		 BLOC subunit 2 0.68 0.3 -0.32
40 AT5G26310 UDP-Glycosyltransferase superfamily protein UGT72E3 -0.68 0.31 -0.34
41 AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 -0.67 0.31 -0.31
42 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.67 0.31 -0.31
43 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.33 -0.34
44 AT2G26210 Ankyrin repeat family protein 0.67 0.32 -0.31
45 AT4G16830 Hyaluronan / mRNA binding family 0.67 0.35 -0.3
46 AT1G02320 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.67 0.31 -0.31
47 AT2G41550 Rho termination factor -0.67 0.33 -0.29
48 AT4G24650 isopentenyltransferase 4 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 4,
isopentenyltransferase 4		 -0.67 0.32 -0.32
49 AT5G38670 Galactose oxidase/kelch repeat superfamily protein 0.67 0.31 -0.31
50 AT5G25160 zinc finger protein 3 zinc finger protein 3 -0.67 0.33 -0.34
51 AT4G05060 PapD-like superfamily protein 0.67 0.31 -0.32
52 AT4G03860 transposable element gene 0.67 0.33 -0.31
53 AT1G69470 unknown protein; Has 6 Blast hits to 6 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.67 0.31 -0.3
54 AT3G23690 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.67 0.33 -0.32
55 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4		 0.67 0.3 -0.33
56 AT1G76660 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in
60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi -
22; Plants - 125; Viruses - 4; Other Eukaryotes - 139
(source: NCBI BLink).		 0.66 0.33 -0.33
57 AT1G48670 auxin-responsive GH3 family protein -0.66 0.33 -0.28
58 AT1G21340 Dof-type zinc finger DNA-binding family protein -0.66 0.33 -0.34
59 AT4G35500 Protein kinase superfamily protein -0.66 0.3 -0.3
60 AT4G37170 Pentatricopeptide repeat (PPR) superfamily protein -0.66 0.34 -0.32
61 AT5G10620 methyltransferases 0.66 0.34 -0.31
62 AT5G53070 Ribosomal protein L9/RNase H1 -0.66 0.33 -0.32
63 AT1G79160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits
to 102 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.31 -0.34
64 AT3G21175 ZIM-like 1 GATA TRANSCRIPTION FACTOR 24,
TIFY2B, ZIM LIKE 1, ZIM-like 1		 0.66 0.29 -0.3
65 AT5G40190 RNA ligase/cyclic nucleotide phosphodiesterase family
protein		 0.66 0.33 -0.32
66 AT2G17080 Arabidopsis protein of unknown function (DUF241) -0.66 0.29 -0.31
67 AT3G61350 SKP1 interacting partner 4 SKP1 interacting partner 4 0.66 0.32 -0.31
68 AT3G02555 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits
to 130 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.31 -0.3
69 AT3G62760 Glutathione S-transferase family protein ATGSTF13 -0.66 0.32 -0.33
70 AT5G48300 ADP glucose pyrophosphorylase 1 ADP glucose pyrophosphorylase 1,
ADP-GLUCOSE PYROPHOSPHORYLASE
SMALL SUBUNIT 1		 0.66 0.29 -0.32
71 AT2G13940 transposable element gene -0.65 0.29 -0.33
72 AT3G49760 basic leucine-zipper 5 basic leucine-zipper 5, basic
leucine-zipper 5		 -0.65 0.35 -0.31
73 AT1G56380 Mitochondrial transcription termination factor family
protein		 -0.65 0.29 -0.32
74 AT3G51500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.65 0.31 -0.29
75 AT1G26300 BSD domain-containing protein 0.65 0.33 -0.31
76 AT2G21480 Malectin/receptor-like protein kinase family protein -0.65 0.31 -0.31
77 AT2G28890 poltergeist like 4 poltergeist like 4 -0.65 0.32 -0.3
78 AT1G36980 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0220
(InterPro:IPR007919); Has 424 Blast hits to 424 proteins in
159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi
- 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).		 0.65 0.32 -0.31
79 AT5G19140 Aluminium induced protein with YGL and LRDR motifs AILP1, ATAILP1 0.65 0.33 -0.31
80 AT3G10620 nudix hydrolase homolog 26 nudix hydrolase homolog 26, nudix
hydrolase homolog 26		 0.65 0.32 -0.32
81 AT5G05130 DNA/RNA helicase protein -0.65 0.31 -0.3
82 AT1G66100 Plant thionin 0.65 0.3 -0.33
83 AT1G30240 FUNCTIONS IN: binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold
(InterPro:IPR016024); Has 165 Blast hits to 164 proteins in
73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi -
68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.65 0.3 -0.31
84 AT2G29820 Galactose oxidase/kelch repeat superfamily protein -0.65 0.33 -0.32
85 AT1G33390 RNA helicase family protein FASCIATED STEM 4, FASCIATED STEM 4 -0.65 0.3 -0.31
86 AT4G27980 Domain of unknown function (DUF3444) -0.65 0.32 -0.32
87 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.65 0.31 -0.31
88 AT1G34750 Protein phosphatase 2C family protein -0.65 0.3 -0.3
89 AT1G14570 UBX domain-containing protein 0.64 0.29 -0.3
90 AT2G36210 SAUR-like auxin-responsive protein family -0.64 0.31 -0.32
91 AT1G32030 Domain of unknown function (DUF313) -0.64 0.3 -0.31
92 AT1G71420 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.32 -0.31
93 AT3G60590 unknown protein; LOCATED IN: chloroplast, chloroplast inner
membrane, chloroplast envelope; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G48460.1); Has 81 Blast hits to 81 proteins in 19
species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0;
Plants - 70; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.64 0.31 -0.32
94 AT3G02290 RING/U-box superfamily protein 0.64 0.32 -0.32
95 AT4G20390 Uncharacterised protein family (UPF0497) -0.64 0.33 -0.31
96 AT2G46200 unknown protein; Has 2968 Blast hits to 2381 proteins in
310 species: Archae - 16; Bacteria - 188; Metazoa - 1070;
Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes -
1318 (source: NCBI BLink).		 -0.64 0.3 -0.33
97 AT1G53270 ABC-2 type transporter family protein ATP-binding cassette G10 -0.64 0.33 -0.32
98 AT3G27230 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.33 -0.31
99 AT2G40220 Integrase-type DNA-binding superfamily protein ABA INSENSITIVE 4, ATABI4, GLUCOSE
INSENSITIVE 6, IMPAIRED SUCROSE
INDUCTION 3, SALOBRENO 5,
SUGAR-INSENSITIVE 5, SUCROSE
UNCOUPLED 6		 -0.64 0.28 -0.31
100 AT4G23930 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.64 0.32 -0.34
101 AT4G33790 Jojoba acyl CoA reductase-related male sterility protein ECERIFERUM 4, FATTY ACID REDUCTASE
3, G7		 -0.64 0.31 -0.3
102 AT4G01630 expansin A17 EXPANSIN 17, expansin A17, ATHEXP
ALPHA 1.13, expansin A17		 -0.64 0.35 -0.31
103 AT5G49620 myb domain protein 78 myb domain protein 78, myb domain
protein 78		 0.64 0.31 -0.33
104 AT5G27660 Trypsin family protein with PDZ domain -0.64 0.32 -0.34
105 AT1G03100 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.29 -0.32
106 AT1G50910 unknown protein; Has 1105 Blast hits to 802 proteins in 217
species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi -
210; Plants - 58; Viruses - 6; Other Eukaryotes - 207
(source: NCBI BLink).		 -0.63 0.32 -0.31
107 AT2G06840 transposable element gene 0.63 0.32 -0.32
108 AT4G37950 Rhamnogalacturonate lyase family protein -0.63 0.33 -0.31
109 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 0.63 0.31 -0.31
110 AT2G40600 appr-1-p processing enzyme family protein 0.63 0.32 -0.32
111 AT1G13420 sulfotransferase 4B ARABIDOPSIS THALIANA
SULFOTRANSFERASE 4B,
sulfotransferase 4B		 -0.63 0.32 -0.31
112 AT5G23770 DOMAIN OF UNKNOWN FUNCTION 724 8 DOMAIN OF UNKNOWN FUNCTION 724 8,
DOMAIN OF UNKNOWN FUNCTION 724 8		 -0.63 0.31 -0.3
113 AT1G78470 BEST Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G67390.1); Has 40 Blast hits to 40
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.34 -0.31
114 AT2G34180 CBL-interacting protein kinase 13 WPL4-LIKE 2, CBL-interacting
protein kinase 13, SNF1-RELATED
PROTEIN KINASE 3.7, WPL4-LIKE 2		 0.63 0.33 -0.31
115 AT5G57720 AP2/B3-like transcriptional factor family protein -0.63 0.32 -0.31
116 AT5G65090 DNAse I-like superfamily protein BRISTLED 1, DEFORMED ROOT HAIRS 4,
MRH3		 -0.63 0.32 -0.33
117 AT1G14400 ubiquitin carrier protein 1 ATUBC1, ubiquitin carrier protein
1, UBIQUITIN CONJUGATING ENZYME 1		 0.63 0.31 -0.32
118 AT5G02070 Protein kinase family protein -0.63 0.31 -0.3
119 AT5G20690 Leucine-rich repeat protein kinase family protein -0.63 0.31 -0.31
120 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 -0.63 0.31 -0.32
121 AT1G30710 FAD-binding Berberine family protein 0.63 0.3 -0.3
122 AT4G00280 BEST Arabidopsis thaliana protein match is: Leucine-rich
repeat transmembrane protein kinase protein
(TAIR:AT2G19210.1); Has 19 Blast hits to 19 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.29 -0.3
123 AT2G11360 transposable element gene -0.62 0.33 -0.3
124 AT3G44600 cyclophilin71 AtCYP71, cyclophilin 71 -0.62 0.31 -0.35
125 AT1G26370 RNA helicase family protein -0.62 0.3 -0.32
126 AT1G19030 transposable element gene -0.62 0.31 -0.32
127 AT3G53550 FBD-like domain family protein -0.62 0.34 -0.31
128 AT5G17960 Cysteine/Histidine-rich C1 domain family protein -0.62 0.29 -0.31
129 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.62 0.31 -0.3
130 AT5G42690 Protein of unknown function, DUF547 -0.62 0.32 -0.32
131 AT3G50400 GDSL-like Lipase/Acylhydrolase superfamily protein -0.62 0.31 -0.31
132 AT1G77730 Pleckstrin homology (PH) domain superfamily protein -0.62 0.3 -0.32
133 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.31 -0.32
134 AT2G39230 LATERAL ORGAN JUNCTION LATERAL ORGAN JUNCTION -0.62 0.33 -0.32
135 AT4G01240 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.62 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0145 Maltotetraose - Maltotetraose starch degradation II -0.84 0.46 -0.45 C0145
137 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.75 0.49 -0.44 C0105