AT1G65260 : plastid transcriptionally active 4
Query Information
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AGICode AT1G65260
Description plastid transcriptionally active 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G65260 plastid transcriptionally active 4 plastid transcriptionally active
4, VESICLE-INDUCING PROTEIN IN
PLASTIDS 1		 1 0.32 -0.33
2 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain
family protein		 0.87 0.28 -0.32
3 AT5G03880 Thioredoxin family protein 0.86 0.31 -0.31
4 AT1G12410 CLP protease proteolytic subunit 2 CLP protease proteolytic subunit
2, CLPR2, EMBRYO DEFECTIVE 3146,
NUCLEAR-ENCODED CLP PROTEASE P2		 0.86 0.31 -0.32
5 AT3G15900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.84 0.31 -0.32
6 AT2G28800 63 kDa inner membrane family protein ALBINO 3 0.83 0.29 -0.3
7 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.82 0.32 -0.29
8 AT2G30950 FtsH extracellular protease family FTSH2, VARIEGATED 2 0.82 0.31 -0.32
9 AT2G30170 Protein phosphatase 2C family protein 0.82 0.3 -0.29
10 AT5G47840 adenosine monophosphate kinase adenosine monophosphate kinase 0.82 0.31 -0.3
11 AT5G19540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.81 0.32 -0.33
12 AT5G04440 Protein of unknown function (DUF1997) 0.81 0.32 -0.32
13 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 0.81 0.31 -0.33
14 AT3G50790 esterase/lipase/thioesterase family protein 0.81 0.33 -0.32
15 AT5G12130 integral membrane TerC family protein TELLURITE RESISTANCE C, PIGMENT
DEFECTIVE 149		 0.8 0.31 -0.31
16 AT3G23310 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 0.79 0.33 -0.32
17 AT2G21170 triosephosphate isomerase PLASTID ISOFORM TRIOSE PHOSPHATE
ISOMERASE, triosephosphate
isomerase		 0.79 0.32 -0.31
18 AT5G05200 Protein kinase superfamily protein 0.79 0.31 -0.33
19 AT3G05350 Metallopeptidase M24 family protein 0.79 0.33 -0.32
20 AT1G54520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1517 (InterPro:IPR010903);
Has 276 Blast hits to 275 proteins in 83 species: Archae -
0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).		 0.79 0.33 -0.29
21 AT2G01110 Sec-independent periplasmic protein translocase ALBINO AND PALE GREEN 2, PGA2,
TWIN-ARGININE TRANSLOCATION C,
unfertilized embryo sac 3		 0.79 0.33 -0.33
22 AT3G10230 lycopene cyclase AtLCY, lycopene cyclase 0.78 0.32 -0.3
23 AT4G03520 Thioredoxin superfamily protein ATHM2 0.78 0.32 -0.32
24 AT2G43750 O-acetylserine (thiol) lyase B ARABIDOPSIS CYSTEINE SYNTHASE 1,
ARABIDOPSIS THALIANA CYSTEIN
SYNTHASE-B, CHLOROPLAST
O-ACETYLSERINE SULFHYDRYLASE 1,
O-acetylserine (thiol) lyase B		 0.78 0.32 -0.32
25 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein embryo sac development arrest 3 0.78 0.29 -0.3
26 AT3G15520 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.78 0.33 -0.3
27 AT1G48450 Protein of unknown function (DUF760) 0.78 0.3 -0.32
28 AT4G31530 NAD(P)-binding Rossmann-fold superfamily protein 0.77 0.3 -0.31
29 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.76 0.33 -0.32
30 AT1G65410 non-intrinsic ABC protein 11 ATP-binding cassette I13,
non-intrinsic ABC protein 11,
non-intrinsic ABC protein 11,
TRIGALACTOSYLDIACYLGLYCEROL 3		 0.76 0.33 -0.32
31 AT2G20875 epidermal patterning factor 1 EPIDERMAL PATTERNING FACTOR 1 0.76 0.33 -0.31
32 AT5G38660 acclimation of photosynthesis to environment ACCLIMATION OF PHOTOSYNTHESIS TO
ENVIRONMENT		 0.76 0.31 -0.32
33 AT1G68830 STT7 homolog STN7 STT7 homolog STN7 0.76 0.31 -0.32
34 AT1G50320 thioredoxin X thioredoxin X, THIOREDOXIN X,
thioredoxin X		 0.76 0.31 -0.29
35 AT1G31410 putrescine-binding periplasmic protein-related 0.76 0.31 -0.3
36 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 0.76 0.29 -0.31
37 AT4G18810 NAD(P)-binding Rossmann-fold superfamily protein 0.76 0.3 -0.33
38 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 0.75 0.31 -0.31
39 AT1G11750 CLP protease proteolytic subunit 6 CLP protease proteolytic subunit
6, NUCLEAR-ENCODED CLPP 1, NCLPP6		 0.75 0.3 -0.32
40 AT5G40160 Ankyrin repeat family protein EMBRYO DEFECTIVE 139, embryo
defective 506		 0.75 0.31 -0.32
41 AT1G07110 fructose-2,6-bisphosphatase ATF2KP,
fructose-2,6-bisphosphatase, FKFBP		 0.74 0.31 -0.3
42 ATCG00570 photosystem II reaction center protein F photosystem II reaction center
protein F		 0.74 0.3 -0.33
43 AT3G27925 DegP protease 1 DegP protease 1, DegP protease 1 0.74 0.33 -0.32
44 AT4G17040 CLP protease R subunit 4 CLP protease R subunit 4, happy on
norflurazon 5		 0.74 0.33 -0.3
45 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 0.74 0.32 -0.3
46 AT4G14210 phytoene desaturase 3 PIGMENT DEFECTIVE 226, PHYTOENE
DESATURASE, phytoene desaturase 3		 0.74 0.32 -0.31
47 AT2G44870 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 15 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
- 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.74 0.31 -0.32
48 AT1G25290 RHOMBOID-like protein 10 RHOMBOID-like protein 10,
RHOMBOID-like protein 10		 0.73 0.31 -0.33
49 AT3G10350 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.73 0.33 -0.32
50 AT1G52510 alpha/beta-Hydrolases superfamily protein 0.73 0.32 -0.3
51 AT5G18760 RING/U-box superfamily protein 0.73 0.32 -0.29
52 AT5G04900 NYC1-like NYC1-like 0.73 0.3 -0.33
53 AT2G34460 NAD(P)-binding Rossmann-fold superfamily protein 0.73 0.3 -0.33
54 ATCG00470 ATP synthase epsilon chain ATP synthase epsilon chain 0.73 0.31 -0.34
55 AT4G32590 2Fe-2S ferredoxin-like superfamily protein 0.72 0.32 -0.32
56 AT2G26540 uroporphyrinogen-III synthase family protein DOMAIN OF UNKNOWN FUNCTION 724 3,
ARABIDOPSIS THALIANA
UROPORPHYRINOGEN III SYNTHASE,
DOMAIN OF UNKNOWN FUNCTION 724 3,
HEMD, UROPORPHYRINOGEN III
SYNTHASE		 0.72 0.3 -0.31
57 AT3G09150 phytochromobilin:ferredoxin oxidoreductase, chloroplast /
phytochromobilin synthase (HY2)		 ARABIDOPSIS ELONGATED HYPOCOTYL 2,
GENOMES UNCOUPLED 3, ELONGATED
HYPOCOTYL 2		 0.72 0.32 -0.33
58 AT2G03390 uvrB/uvrC motif-containing protein 0.72 0.32 -0.34
59 AT5G16810 Protein kinase superfamily protein 0.72 0.32 -0.33
60 AT2G31040 ATP synthase protein I -related 0.72 0.31 -0.34
61 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 0.72 0.32 -0.3
62 AT5G44380 FAD-binding Berberine family protein -0.72 0.31 -0.33
63 AT1G24400 lysine histidine transporter 2 AMINO ACID TRANSPORTER-LIKE
PROTEIN 2, ARABIDOPSIS LYSINE
HISTIDINE TRANSPORTER 2, lysine
histidine transporter 2		 0.72 0.3 -0.33
64 AT2G46735 unknown protein; Has 14 Blast hits to 14 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.31 -0.32
65 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 0.72 0.33 -0.33
66 AT5G58330 lactate/malate dehydrogenase family protein 0.72 0.31 -0.33
67 AT3G17930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3007
(InterPro:IPR021562); Has 236 Blast hits to 236 proteins in
83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80
(source: NCBI BLink).		 0.72 0.32 -0.31
68 AT1G04620 coenzyme F420 hydrogenase family / dehydrogenase, beta
subunit family		 7-hydroxymethyl chlorophyll a
(HMChl) reductase		 0.71 0.3 -0.31
69 AT2G39690 Protein of unknown function, DUF547 0.71 0.31 -0.31
70 AT4G21860 methionine sulfoxide reductase B 2 methionine sulfoxide reductase B 2 0.71 0.29 -0.31
71 AT4G28025 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.71 0.33 -0.3
72 AT3G26310 cytochrome P450, family 71, subfamily B, polypeptide 35 cytochrome P450, family 71,
subfamily B, polypeptide 35		 0.71 0.32 -0.29
73 AT2G42570 TRICHOME BIREFRINGENCE-LIKE 39 TRICHOME BIREFRINGENCE-LIKE 39 -0.67 0.32 -0.3
74 AT1G13970 Protein of unknown function (DUF1336) -0.66 0.32 -0.29
75 AT2G18980 Peroxidase superfamily protein -0.66 0.33 -0.32
76 AT3G15300 VQ motif-containing protein -0.66 0.31 -0.33
77 AT4G28410 Tyrosine transaminase family protein -0.65 0.3 -0.31
78 AT1G31950 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.64 0.31 -0.32
79 AT1G44970 Peroxidase superfamily protein -0.63 0.34 -0.31
80 AT5G14150 Protein of unknown function, DUF642 -0.63 0.3 -0.3
81 AT2G36100 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 1		 -0.63 0.31 -0.31
82 AT5G43780 Pseudouridine synthase/archaeosine transglycosylase-like
family protein		 APS4 -0.62 0.32 -0.31
83 AT4G30170 Peroxidase family protein -0.62 0.31 -0.3
84 AT2G41660 Protein of unknown function, DUF617 mizu-kussei 1 -0.62 0.3 -0.32
85 AT5G02100 Oxysterol-binding family protein OSBP(OXYSTEROL BINDING
PROTEIN)-RELATED PROTEIN 3A,
UNFERTILIZED EMBRYO SAC 18		 -0.62 0.32 -0.3
86 AT2G25810 tonoplast intrinsic protein 4;1 tonoplast intrinsic protein 4;1 -0.61 0.3 -0.29
87 AT1G30080 Glycosyl hydrolase superfamily protein -0.59 0.32 -0.31
88 AT5G42830 HXXXD-type acyl-transferase family protein -0.58 0.34 -0.32
89 AT2G47680 zinc finger (CCCH type) helicase family protein -0.58 0.32 -0.32
90 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.58 0.32 -0.32
91 AT2G32300 uclacyanin 1 uclacyanin 1 -0.58 0.32 -0.31
92 AT1G11420 DOMAIN OF UNKNOWN FUNCTION 724 2 DOMAIN OF UNKNOWN FUNCTION 724 2,
DOMAIN OF UNKNOWN FUNCTION 724 2		 -0.57 0.3 -0.3
93 AT5G05960 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.57 0.34 -0.3
94 AT1G08320 bZIP transcription factor family protein bZIP21, TGACG (TGA) motif-binding
protein 9		 -0.57 0.3 -0.31
95 AT1G17430 alpha/beta-Hydrolases superfamily protein -0.56 0.31 -0.3
96 AT1G79580 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 33, SOMBRERO		 -0.56 0.32 -0.33
97 AT5G55170 small ubiquitin-like modifier 3 ATSUMO3, SMALL UBIQUITIN-LIKE
MODIFIER 3, SMALL UBIQUITIN-LIKE
MODIFIER 3, small ubiquitin-like
modifier 3		 -0.55 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
98 C0187 Neoeriocitrin - - - -0.66 0.44 -0.45