AT1G61940 : tubby like protein 4
Query Information
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AGICode AT1G61940
Description tubby like protein 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 1 0.32 -0.33
2 AT1G75930 extracellular lipase 6 extracellular lipase 6 -0.75 0.31 -0.32
3 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.72 0.33 -0.32
4 AT1G68320 myb domain protein 62 myb domain protein 62, BW62B,
BW62C, myb domain protein 62		 0.7 0.34 -0.31
5 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE		 -0.69 0.31 -0.32
6 AT3G10880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G05180.1); Has 15699 Blast
hits to 11378 proteins in 1134 species: Archae - 391;
Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants -
1096; Viruses - 119; Other Eukaryotes - 3834 (source: NCBI
BLink).		 -0.69 0.33 -0.34
7 AT5G16920 Fasciclin-like arabinogalactan family protein 0.68 0.31 -0.31
8 AT3G01920 DHBP synthase RibB-like alpha/beta domain -0.68 0.34 -0.33
9 AT4G03750 transposable element gene 0.68 0.32 -0.29
10 AT3G43630 Vacuolar iron transporter (VIT) family protein 0.68 0.31 -0.31
11 AT3G45480 RING/U-box protein with C6HC-type zinc finger -0.67 0.3 -0.34
12 AT1G05550 Protein of unknown function (DUF295) 0.67 0.33 -0.31
13 AT1G08100 nitrate transporter 2.2 ACH2, NITRATE TRANSPORTER 2.2,
nitrate transporter 2.2, NRT2;2AT		 0.66 0.31 -0.31
14 ATMG00670 hypothetical protein ORF275 0.66 0.3 -0.31
15 AT1G02490 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.66 0.33 -0.3
16 AT1G43810 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.66 0.32 -0.32
17 AT4G13960 F-box/RNI-like superfamily protein -0.65 0.32 -0.32
18 AT1G64320 myosin heavy chain-related 0.65 0.31 -0.3
19 AT2G22410 SLOW GROWTH 1 SLOW GROWTH 1 0.65 0.3 -0.32
20 AT3G54100 O-fucosyltransferase family protein 0.65 0.31 -0.33
21 AT2G33620 AT hook motif DNA-binding family protein -0.65 0.36 -0.31
22 AT4G15270 glucosyltransferase-related 0.65 0.33 -0.3
23 AT1G42700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to cold; LOCATED IN: nucleus; BEST Arabidopsis
thaliana protein match is: Plant transposase (Ptta/En/Spm
family) (TAIR:AT1G40087.1); Has 10 Blast hits to 10
proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.65 0.31 -0.33
24 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.64 0.31 -0.29
25 AT2G37070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G53320.1); Has 1323 Blast hits
to 775 proteins in 176 species: Archae - 0; Bacteria - 113;
Metazoa - 351; Fungi - 175; Plants - 115; Viruses - 13;
Other Eukaryotes - 556 (source: NCBI BLink).		 -0.64 0.32 -0.31
26 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 -0.64 0.32 -0.31
27 AT5G57410 Afadin/alpha-actinin-binding protein -0.64 0.31 -0.33
28 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein 0.64 0.31 -0.3
29 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.64 0.3 -0.31
30 AT1G53790 F-box and associated interaction domains-containing protein 0.64 0.33 -0.32
31 AT5G47620 RNA-binding (RRM/RBD/RNP motifs) family protein 0.64 0.34 -0.32
32 AT3G18770 Autophagy-related protein 13 0.63 0.32 -0.33
33 AT5G51320 transposable element gene -0.63 0.29 -0.33
34 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.63 0.32 -0.31
35 AT3G25650 SKP1-like 15 SKP1-like 15, SKP1-like 15 0.63 0.34 -0.31
36 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17		 0.63 0.3 -0.31
37 AT3G04605 transposable element gene 0.63 0.32 -0.32
38 AT1G49015 DPP6 N-terminal domain-like protein 0.62 0.31 -0.32
39 AT2G31500 calcium-dependent protein kinase 24 calcium-dependent protein kinase
24		 -0.62 0.32 -0.34
40 AT2G19330 plant intracellular ras group-related LRR 6 plant intracellular ras
group-related LRR 6		 -0.62 0.3 -0.31
41 AT1G05900 endonuclease III 2 ATNTH2, endonuclease III 2 -0.62 0.31 -0.31
42 AT5G65170 VQ motif-containing protein 0.62 0.32 -0.32
43 AT5G25570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.61 0.32 -0.32
44 AT3G32180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G32160.1); Has 37 Blast hits
to 25 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.33 -0.31
45 AT4G09480 transposable element gene -0.61 0.32 -0.32
46 AT1G16330 cyclin b3;1 cyclin b3;1 -0.61 0.34 -0.29
47 AT5G08100 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 asparaginase A1 -0.61 0.32 -0.3
48 AT1G63590 Receptor-like protein kinase-related family protein -0.61 0.3 -0.31
49 AT4G11340 Disease resistance protein (TIR-NBS-LRR class) family 0.61 0.3 -0.33
50 AT4G35620 Cyclin B2;2 Cyclin B2;2 -0.61 0.31 -0.31
51 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.61 0.32 -0.33
52 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 -0.6 0.32 -0.32
53 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 -0.6 0.32 -0.32
54 AT5G35900 LOB domain-containing protein 35 LOB domain-containing protein 35 -0.59 0.33 -0.31
55 AT5G59660 Leucine-rich repeat protein kinase family protein -0.59 0.33 -0.3
56 AT4G15200 formin 3 formin 3, formin 3 -0.59 0.3 -0.33
57 AT2G07170 ARM repeat superfamily protein -0.59 0.31 -0.33
58 AT2G11235 transposable element gene -0.59 0.31 -0.3
59 AT1G71830 somatic embryogenesis receptor-like kinase 1 SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 1, somatic
embryogenesis receptor-like kinase
1		 0.59 0.32 -0.31
60 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 0.59 0.3 -0.33
61 AT2G01270 quiescin-sulfhydryl oxidase 2 quiescin-sulfhydryl oxidase 2,
quiescin-sulfhydryl oxidase 2		 0.59 0.32 -0.31
62 AT1G24110 Peroxidase superfamily protein 0.58 0.3 -0.33
63 AT5G08200 peptidoglycan-binding LysM domain-containing protein 0.58 0.33 -0.29
64 AT4G10460 transposable element gene 0.58 0.31 -0.32
65 AT5G07930 MEI2 C-terminal RRM only like 2 MEI2 C-terminal RRM only like 2 -0.58 0.35 -0.32
66 AT1G79350 RING/FYVE/PHD zinc finger superfamily protein embryo defective 1135 0.58 0.33 -0.32
67 AT1G35780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits
to 144 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.32 -0.32
68 AT5G40680 Galactose oxidase/kelch repeat superfamily protein 0.58 0.31 -0.29
69 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 -0.58 0.34 -0.33
70 AT1G63500 Protein kinase protein with tetratricopeptide repeat domain 0.58 0.32 -0.31
71 AT3G30150 transposable element gene -0.58 0.31 -0.32
72 AT4G09950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.57 0.32 -0.33
73 AT2G42480 TRAF-like family protein -0.57 0.31 -0.31
74 AT4G38190 cellulose synthase like D4 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE-LIKE D4, cellulose
synthase like D4		 0.57 0.29 -0.29
75 AT5G41730 Protein kinase family protein 0.57 0.32 -0.31
76 AT5G65590 Dof-type zinc finger DNA-binding family protein -0.57 0.3 -0.33
77 AT1G71470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22090.1); Has 11 Blast hits
to 11 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.57 0.32 -0.32
78 AT3G58740 citrate synthase 1 citrate synthase 1 0.57 0.32 -0.34
79 AT2G40740 WRKY DNA-binding protein 55 WRKY DNA-BINDING PROTEIN 55, WRKY
DNA-binding protein 55		 0.57 0.3 -0.31
80 AT2G03390 uvrB/uvrC motif-containing protein -0.57 0.31 -0.31
81 AT2G35550 basic pentacysteine 7 BASIC PENTACYSTEINE 7, BBR, basic
pentacysteine 7		 0.57 0.29 -0.34
82 AT3G56630 cytochrome P450, family 94, subfamily D, polypeptide 2 cytochrome P450, family 94,
subfamily D, polypeptide 2		 0.57 0.31 -0.33
83 AT4G29090 Ribonuclease H-like superfamily protein 0.57 0.3 -0.31
84 AT3G44140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.57 0.33 -0.32
85 AT1G21290 transposable element gene 0.57 0.31 -0.34
86 AT3G61040 cytochrome P450, family 76, subfamily C, polypeptide 7 cytochrome P450, family 76,
subfamily C, polypeptide 7		 0.57 0.33 -0.31
87 AT5G53480 ARM repeat superfamily protein 0.57 0.31 -0.32
88 AT3G28610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.57 0.3 -0.29
89 AT1G47230 CYCLIN A3;4 CYCLIN A3;4 -0.57 0.3 -0.3
90 AT2G29050 RHOMBOID-like 1 RHOMBOID-like 1, RHOMBOID-like 1 -0.57 0.32 -0.32
91 AT5G10660 calmodulin-binding protein-related 0.57 0.33 -0.31
92 AT5G60410 DNA-binding protein with MIZ/SP-RING zinc finger,
PHD-finger and SAP domain		 ATSIZ1, SIZ1 0.56 0.3 -0.31
93 AT4G35350 xylem cysteine peptidase 1 xylem cysteine peptidase 1 -0.56 0.3 -0.31
94 AT1G19690 NAD(P)-binding Rossmann-fold superfamily protein -0.56 0.31 -0.29
95 AT3G22050 Domain of unknown function (DUF26) 0.56 0.32 -0.31
96 AT5G55490 gamete expressed protein 1 GAMETE EXPRESSED PROTEIN 1, gamete
expressed protein 1		 0.56 0.32 -0.31
97 AT1G16380 Cation/hydrogen exchanger family protein ATCHX1, CATION EXCHANGER 1 0.56 0.3 -0.31
98 AT2G17340 Uncharacterised conserved protein (UCP030210) -0.56 0.32 -0.34
99 AT1G76880 Duplicated homeodomain-like superfamily protein 0.56 0.34 -0.29
100 AT1G13540 Protein of unknown function (DUF1262) -0.56 0.32 -0.32
101 AT1G75790 SKU5 similar 18 SKU5 similar 18 0.56 0.3 -0.33
102 AT4G04470 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein PMP22 -0.56 0.33 -0.3
103 AT2G26320 AGAMOUS-like 33 AGAMOUS-like 33 -0.56 0.3 -0.32
104 AT1G21510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cotyledon; Has
380 Blast hits to 286 proteins in 63 species: Archae - 0;
Bacteria - 6; Metazoa - 254; Fungi - 44; Plants - 13;
Viruses - 5; Other Eukaryotes - 58 (source: NCBI BLink).		 -0.55 0.33 -0.29
105 AT3G10990 F-box associated ubiquitination effector family protein -0.55 0.3 -0.32
106 AT1G32600 F-box associated ubiquitination effector family protein -0.55 0.32 -0.34
107 AT5G08120 movement protein binding protein 2C movement protein binding protein
2C		 -0.55 0.3 -0.34
108 AT1G50350 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT3G19950.1); Has 37 Blast hits
to 37 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.31 -0.31
109 AT1G59670 glutathione S-transferase TAU 15 glutathione S-transferase TAU 15,
glutathione S-transferase TAU 15		 -0.54 0.32 -0.31
110 AT2G32790 Ubiquitin-conjugating enzyme family protein -0.54 0.31 -0.29
111 AT3G42340 transposable element gene -0.54 0.3 -0.31
112 AT2G17620 Cyclin B2;1 Cyclin B2;1 -0.54 0.32 -0.33
113 AT3G13350 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 -0.54 0.32 -0.28
114 AT1G02190 Fatty acid hydroxylase superfamily -0.54 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
115 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate -0.71 0.44 -0.49 C0136
116 C0162 MST_1588.3 - - - -0.68 0.45 -0.47
117 C0159 MST_1505.6 - - - -0.65 0.42 -0.43
118 C0059 Arginine amide - - - -0.65 0.42 -0.42
119 C0219 Pyroglutamic acid (2R,2S)-Pyroglutamic acid 5-Oxoproline gamma-glutamyl cycle (plant pathway),
gamma-glutamyl cycle 		-0.62 0.32 -0.3 C0219
120 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		-0.61 0.45 -0.45 C0011
121 C0006 β-Homothreonine L-β-Homothreonine - - -0.59 0.45 -0.45
122 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III -0.57 0.44 -0.48 C0195