AT1G03360 : ribosomal RNA processing 4
Query Information
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AGICode AT1G03360
Description ribosomal RNA processing 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 1 0.33 -0.3
2 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.86 0.31 -0.32
3 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.85 0.31 -0.34
4 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.85 0.33 -0.31
5 AT3G57000 nucleolar essential protein-related 0.84 0.32 -0.3
6 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 0.84 0.3 -0.3
7 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.84 0.3 -0.31
8 AT2G22400 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.83 0.31 -0.31
9 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.83 0.31 -0.31
10 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.83 0.29 -0.32
11 AT1G18800 NAP1-related protein 2 NAP1-related protein 2 0.83 0.3 -0.31
12 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.82 0.31 -0.31
13 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.81 0.3 -0.32
14 AT2G28600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.81 0.31 -0.3
15 AT3G61620 3'-5'-exoribonuclease family protein RRP41 0.81 0.31 -0.31 IDA
16 AT3G01160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: NUC153
(InterPro:IPR012580); Has 36638 Blast hits to 21323
proteins in 1057 species: Archae - 109; Bacteria - 2369;
Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses -
489; Other Eukaryotes - 13360 (source: NCBI BLink).		 0.8 0.31 -0.31
17 AT3G49180 Transducin/WD40 repeat-like superfamily protein ROOT INITIATION DEFECTIVE 3 0.8 0.33 -0.33
18 AT3G06610 DNA-binding enhancer protein-related 0.8 0.33 -0.32
19 AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein
associated protein B		 0.8 0.32 -0.32
20 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.8 0.31 -0.29
21 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A		 -0.8 0.31 -0.32
22 AT1G54770 Fcf2 pre-rRNA processing protein 0.79 0.33 -0.32
23 AT2G40420 Transmembrane amino acid transporter family protein -0.79 0.32 -0.34
24 AT2G31710 Vacuolar ATPase assembly integral membrane protein
VMA21-like domain		 0.79 0.29 -0.32
25 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 0.79 0.32 -0.31
26 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 0.79 0.3 -0.33
27 AT2G19385 zinc ion binding 0.79 0.31 -0.31
28 AT3G02820 zinc knuckle (CCHC-type) family protein 0.79 0.34 -0.33
29 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.79 0.3 -0.33
30 AT4G30840 Transducin/WD40 repeat-like superfamily protein 0.79 0.33 -0.32
31 AT5G19320 RAN GTPase activating protein 2 RAN GTPase activating protein 2 0.78 0.33 -0.31
32 AT3G59540 Ribosomal L38e protein family 0.78 0.33 -0.31
33 AT5G06360 Ribosomal protein S8e family protein 0.78 0.33 -0.32
34 AT2G34780 maternal effect embryo arrest 22 EMBRYO DEFECTIVE 1611, MATERNAL
EFFECT EMBRYO ARREST 22		 0.78 0.32 -0.3
35 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.78 0.3 -0.33
36 AT2G44510 CDK inhibitor P21 binding protein 0.78 0.31 -0.32
37 AT1G03110 Transducin/WD40 repeat-like superfamily protein AtTRM82, tRNA modification 82 0.78 0.31 -0.29
38 AT3G56090 ferritin 3 ferritin 3, ferritin 3 0.78 0.32 -0.31
39 AT3G46040 ribosomal protein S15A D ribosomal protein S15A D 0.78 0.3 -0.32
40 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.77 0.32 -0.3
41 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.32 -0.31
42 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.77 0.3 -0.33
43 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A -0.77 0.32 -0.31
44 AT3G15460 Ribosomal RNA processing Brix domain protein 0.77 0.31 -0.33
45 AT1G61580 R-protein L3 B ARABIDOPSIS RIBOSOMAL PROTEIN 2,
R-protein L3 B		 0.76 0.3 -0.29
46 AT1G25260 Ribosomal protein L10 family protein 0.76 0.29 -0.31
47 AT5G38890 Nucleic acid-binding, OB-fold-like protein 0.76 0.35 -0.31
48 AT5G66540 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: cytosol, nucleolus, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: U3 small
nucleolar ribonucleoprotein complex, subunit Mpp10p
(InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.75 0.29 -0.32
49 AT3G19440 Pseudouridine synthase family protein 0.75 0.33 -0.32
50 AT3G02220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2039 (InterPro:IPR019351); Has 215
Blast hits to 215 proteins in 94 species: Archae - 2;
Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.75 0.32 -0.32
51 AT4G19860 alpha/beta-Hydrolases superfamily protein -0.75 0.3 -0.31
52 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 -0.75 0.3 -0.31
53 AT3G07590 Small nuclear ribonucleoprotein family protein 0.75 0.31 -0.3
54 AT2G25355 PNAS-3 related 0.75 0.29 -0.31
55 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.75 0.32 -0.32
56 AT1G06560 NOL1/NOP2/sun family protein 0.74 0.33 -0.3
57 AT3G23830 glycine-rich RNA-binding protein 4 AtGRP4, GR-RBP4, glycine-rich
RNA-binding protein 4		 0.74 0.28 -0.3
58 AT3G07350 Protein of unknown function (DUF506) -0.74 0.34 -0.3
59 AT4G16700 phosphatidylserine decarboxylase 1 phosphatidylserine decarboxylase 1 0.74 0.32 -0.31
60 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein 0.74 0.33 -0.33
61 AT1G36380 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 15 growth
stages; Has 14 Blast hits to 14 proteins in 6 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.32 -0.31
62 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c -0.72 0.29 -0.29
63 AT4G27990 YGGT family protein ATYLMG1-2, YLMG1-2 -0.72 0.3 -0.34
64 AT3G54360 zinc ion binding -0.71 0.36 -0.31
65 AT5G65760 Serine carboxypeptidase S28 family protein -0.71 0.33 -0.31
66 AT5G37670 HSP20-like chaperones superfamily protein -0.71 0.3 -0.3
67 AT3G08840 D-alanine--D-alanine ligase family -0.7 0.32 -0.31
68 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.7 0.32 -0.31
69 AT3G06170 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.69 0.3 -0.31
70 AT2G36640 embryonic cell protein 63 embryonic cell protein 63,
embryonic cell protein 63		 -0.69 0.33 -0.33
71 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.68 0.33 -0.31
72 AT1G70160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in
20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.68 0.33 -0.32
73 AT2G06005 FRIGIDA interacting protein 1 FRIGIDA interacting protein 1 -0.67 0.33 -0.34
74 AT1G07230 non-specific phospholipase C1 non-specific phospholipase C1 -0.67 0.33 -0.32
75 AT3G54390 sequence-specific DNA binding transcription factors -0.67 0.32 -0.34
76 AT5G19860 Protein of unknown function, DUF538 -0.67 0.32 -0.32
77 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.67 0.29 -0.33
78 AT3G13672 TRAF-like superfamily protein -0.67 0.3 -0.32
79 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 -0.65 0.33 -0.32
80 AT4G26980 RNI-like superfamily protein -0.65 0.29 -0.32
81 AT2G30540 Thioredoxin superfamily protein -0.65 0.3 -0.31
82 AT4G38460 geranylgeranyl reductase geranylgeranyl reductase -0.64 0.35 -0.35
83 AT3G16170 AMP-dependent synthetase and ligase family protein acyl activating enzyme 13 -0.64 0.3 -0.29
84 AT5G51210 oleosin3 oleosin3 -0.64 0.32 -0.33