AT2G25170 : CHD3
Query Information
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AGICode AT2G25170
Description chromatin remodeling factor CHD3 (PICKLE)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G25170 chromatin remodeling factor CHD3 (PICKLE) CHD3, CHR6,
CYTOKININ-HYPERSENSITIVE 2,
GYMNOS, PICKLE, SUPPRESSOR OF SLR
2		 1 0.31 -0.32
2 AT4G14410 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 basic Helix-Loop-Helix 104 -0.74 0.34 -0.33
3 AT2G43600 Chitinase family protein -0.72 0.33 -0.31
4 AT2G17720 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 prolyl 4-hydroxylase 5 -0.7 0.31 -0.32
5 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 0.68 0.31 -0.31
6 AT1G79670 Wall-associated kinase family protein RESISTANCE TO FUSARIUM OXYSPORUM
1, WAKL22		 -0.68 0.32 -0.31
7 AT2G23620 methyl esterase 1 ARABIDOPSIS THALIANA METHYL
ESTERASE 1, methyl esterase 1		 -0.68 0.34 -0.31
8 AT3G09490 Tetratricopeptide repeat (TPR)-like superfamily protein -0.68 0.31 -0.3
9 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 -0.67 0.31 -0.31
10 AT2G16060 hemoglobin 1 hemoglobin 1, ARATH GLB1, ATGLB1,
CLASS I HEMOGLOBIN, hemoglobin 1,
NSHB1		 -0.67 0.33 -0.33
11 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 -0.67 0.33 -0.3
12 AT5G20680 TRICHOME BIREFRINGENCE-LIKE 16 TRICHOME BIREFRINGENCE-LIKE 16 -0.67 0.31 -0.35
13 AT2G25890 Oleosin family protein 0.67 0.33 -0.31
14 AT1G17890 NAD(P)-binding Rossmann-fold superfamily protein GER2 -0.67 0.32 -0.34
15 AT2G36310 uridine-ribohydrolase 1 nucleoside hydrolase 1,
uridine-ribohydrolase 1		 -0.67 0.33 -0.32
16 AT4G20780 calmodulin like 42 calmodulin like 42 -0.66 0.33 -0.31
17 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein 0.66 0.33 -0.31
18 AT5G24070 Peroxidase superfamily protein -0.66 0.31 -0.3
19 AT5G03630 Pyridine nucleotide-disulphide oxidoreductase family
protein		 ATMDAR2 -0.66 0.3 -0.33
20 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2		 -0.66 0.31 -0.32
21 AT3G33530 Transducin family protein / WD-40 repeat family protein 0.66 0.33 -0.34
22 AT1G15340 methyl-CPG-binding domain 10 methyl-CPG-binding domain 10 0.66 0.31 -0.31
23 AT4G19410 Pectinacetylesterase family protein -0.66 0.34 -0.31
24 AT1G11130 Leucine-rich repeat protein kinase family protein SCRAMBLED, STRUBBELIG-RECEPTOR
FAMILY 9, STRUBBELIG		 0.66 0.29 -0.31
25 AT2G45340 Leucine-rich repeat protein kinase family protein 0.66 0.31 -0.31
26 AT4G00300 fringe-related protein -0.65 0.32 -0.35
27 AT3G14980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.65 0.33 -0.31
28 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.65 0.3 -0.31
29 AT5G64080 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 AtXYP1, xylogen protein 1 0.65 0.31 -0.31
30 AT5G18830 squamosa promoter binding protein-like 7 SQUAMOSA PROMOTER BINDING
PROTEIN-LIKE 7, squamosa promoter
binding protein-like 7		 0.65 0.33 -0.3
31 AT5G19890 Peroxidase superfamily protein -0.64 0.3 -0.31
32 AT3G11000 DCD (Development and Cell Death) domain protein 0.64 0.3 -0.31
33 AT3G17780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: B-cell
receptor-associated 31-like (TAIR:AT1G48440.1); Has 102
Blast hits to 102 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.31
34 AT1G68200 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.64 0.34 -0.33
35 AT4G11850 phospholipase D gamma 1 maternal effect embryo arrest 54,
phospholipase D gamma 1		 -0.64 0.31 -0.31
36 AT5G54740 seed storage albumin 5 seed storage albumin 5 0.63 0.28 -0.32
37 AT3G57570 ARM repeat superfamily protein 0.63 0.33 -0.31
38 AT3G04880 DNA-damage-repair/toleration protein (DRT102) DNA-DAMAGE-REPAIR/TOLERATION 2 -0.63 0.33 -0.31
39 AT4G18430 RAB GTPase homolog A1E RAB GTPase homolog A1E, RAB GTPase
homolog A1E		 -0.63 0.31 -0.31
40 AT3G16690 Nodulin MtN3 family protein AtSWEET16, SWEET16 -0.63 0.32 -0.29
41 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.63 0.32 -0.33
42 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.63 0.32 -0.33
43 AT1G26960 homeobox protein 23 homeobox protein 23, homeobox
protein 23		 -0.63 0.32 -0.31
44 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 -0.63 0.33 -0.3
45 AT3G43740 Leucine-rich repeat (LRR) family protein -0.63 0.33 -0.3
46 AT3G28930 AIG2-like (avirulence induced gene) family protein AVRRPT2-INDUCED GENE 2 -0.63 0.31 -0.3
47 AT5G58220 transthyretin-like protein allantoin synthase,
transthyretin-like protein		 -0.63 0.31 -0.31
48 AT2G40170 Stress induced protein ARABIDOPSIS EARLY
METHIONINE-LABELLED 6, EARLY
METHIONINE-LABELLED 6, LATE
EMBRYOGENESIS ABUNDANT 6		 0.62 0.3 -0.3
49 AT1G30000 alpha-mannosidase 3 alpha-mannosidase 3 -0.62 0.31 -0.32
50 AT2G24765 ADP-ribosylation factor 3 ADP-ribosylation factor 3,
ARF-LIKE 1, ARF-LIKE 1		 -0.62 0.33 -0.33
51 AT3G28180 Cellulose-synthase-like C4 Cellulose-synthase-like C4,
ATCSLC4, CSLC04,
Cellulose-synthase-like C4,
CELLULOSE-SYNTHASE LIKE C4		 -0.62 0.35 -0.31
52 AT4G32551 LisH dimerisation motif;WD40/YVTN repeat-like-containing
domain		 LEUNIG, ROTUNDA 2 0.62 0.3 -0.33
53 AT4G15660 Thioredoxin superfamily protein -0.62 0.32 -0.3
54 AT1G15940 Tudor/PWWP/MBT superfamily protein 0.62 0.32 -0.3
55 AT2G17390 ankyrin repeat-containing 2B ankyrin repeat-containing 2B -0.62 0.3 -0.32
56 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.62 0.31 -0.31
57 AT5G36880 acetyl-CoA synthetase acetyl-CoA synthetase -0.62 0.31 -0.34
58 AT5G46750 ARF-GAP domain 9 ARF-GAP domain 9 -0.61 0.32 -0.32
59 AT1G63490 transcription factor jumonji (jmjC) domain-containing
protein		 0.61 0.29 -0.32
60 AT4G33720 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.61 0.31 -0.32
61 AT1G78460 SOUL heme-binding family protein -0.61 0.31 -0.31
62 AT2G33470 glycolipid transfer protein 1 ARABIDOPSIS GLYCOLIPID TRANSFER
PROTEIN 1, glycolipid transfer
protein 1		 -0.61 0.33 -0.31
63 AT4G01700 Chitinase family protein -0.61 0.32 -0.33
64 AT5G46230 Protein of unknown function, DUF538 -0.61 0.33 -0.32
65 AT1G05510 Protein of unknown function (DUF1264) 0.61 0.32 -0.3
66 AT5G52280 Myosin heavy chain-related protein 0.61 0.32 -0.31
67 AT5G51350 Leucine-rich repeat transmembrane protein kinase family
protein		 MORE LATERAL GROWTH1 0.61 0.3 -0.28
68 AT2G03150 ATP/GTP-binding protein family embryo defective 1579 0.61 0.29 -0.32
69 AT1G67330 Protein of unknown function (DUF579) -0.61 0.33 -0.32
70 AT1G63430 Leucine-rich repeat protein kinase family protein 0.61 0.32 -0.29
71 AT3G24670 Pectin lyase-like superfamily protein -0.6 0.31 -0.33
72 AT3G23160 Protein of unknown function (DUF668) 0.6 0.32 -0.32
73 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 -0.6 0.3 -0.32
74 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.6 0.3 -0.33
75 AT5G63910 farnesylcysteine lyase farnesylcysteine lyase -0.6 0.33 -0.32
76 AT1G10570 Cysteine proteinases superfamily protein OVERLY TOLERANT TO SALT 2, UB-LIKE
PROTEASE 1C		 0.6 0.32 -0.3
77 AT1G05160 cytochrome P450, family 88, subfamily A, polypeptide 3 ATKAO1, cytochrome P450, family
88, subfamily A, polypeptide 3,
ENT-KAURENOIC ACID OXYDASE 1		 0.6 0.3 -0.3
78 AT5G43590 Acyl transferase/acyl hydrolase/lysophospholipase
superfamily protein		 -0.6 0.3 -0.32
79 AT1G72360 Integrase-type DNA-binding superfamily protein AtERF73, ethylene response factor
73, HYPOXIA RESPONSIVE ERF
(ETHYLENE RESPONSE FACTOR) 1		 -0.6 0.3 -0.33
80 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.6 0.32 -0.33
81 AT1G22200 Endoplasmic reticulum vesicle transporter protein -0.6 0.29 -0.32
82 AT3G54040 PAR1 protein -0.6 0.31 -0.33
83 AT3G23770 O-Glycosyl hydrolases family 17 protein -0.6 0.32 -0.32
84 AT5G65130 Integrase-type DNA-binding superfamily protein -0.6 0.32 -0.3
85 AT3G21370 beta glucosidase 19 beta glucosidase 19 0.6 0.31 -0.32
86 AT3G14960 Galactosyltransferase family protein -0.6 0.33 -0.3
87 AT4G16510 YbaK/aminoacyl-tRNA synthetase-associated domain -0.6 0.3 -0.31
88 AT5G44120 RmlC-like cupins superfamily protein CRUCIFERINA, CRUCIFERINA, CRU1 0.6 0.31 -0.32
89 AT3G09290 telomerase activator1 telomerase activator1 -0.59 0.3 -0.32
90 AT2G30870 glutathione S-transferase PHI 10 ARABIDOPSIS THALIANA GLUTATHIONE
S-TRANSFERASE PHI 10, ATGSTF4,
EARLY DEHYDRATION-INDUCED 13,
glutathione S-transferase PHI 10		 -0.59 0.3 -0.31
91 AT1G75360 unknown protein; Has 74 Blast hits to 71 proteins in 15
species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 0;
Plants - 54; Viruses - 0; Other Eukaryotes - 12 (source:
NCBI BLink).		 0.59 0.33 -0.3
92 AT4G22930 pyrimidin 4 DIHYDROOROTASE, pyrimidin 4 -0.59 0.32 -0.29
93 AT4G19185 nodulin MtN21 /EamA-like transporter family protein -0.59 0.33 -0.3
94 AT2G23630 SKU5 similar 16 SKU5 similar 16 -0.59 0.33 -0.31
95 AT5G17300 Homeodomain-like superfamily protein REVEILLE 1 0.59 0.34 -0.32
96 AT3G26560 ATP-dependent RNA helicase, putative 0.59 0.3 -0.33
97 AT2G45010 PLAC8 family protein -0.59 0.32 -0.32
98 AT1G22860 Vacuolar sorting protein 39 0.59 0.33 -0.31
99 AT1G10120 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.59 0.31 -0.3
100 AT3G20390 endoribonuclease L-PSP family protein -0.59 0.31 -0.29
101 AT1G22310 methyl-CPG-binding domain 8 ATMBD8, methyl-CPG-binding domain
8		 0.59 0.33 -0.32
102 AT1G58100 TCP family transcription factor TCP domain protein 8 -0.59 0.31 -0.33
103 AT1G79430 Homeodomain-like superfamily protein ALTERED PHLOEM DEVELOPMENT, WOODY -0.59 0.31 -0.31
104 AT1G63420 Arabidopsis thaliana protein of unknown function (DUF821) 0.58 0.31 -0.33
105 AT3G53110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 LOW EXPRESSION OF OSMOTICALLY
RESPONSIVE GENES 4		 -0.58 0.32 -0.31
106 AT1G33400 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 9 0.58 0.32 -0.31
107 AT1G48140 dolichol-phosphate mannosyltransferase-related dolichol phosphate mannose
synthase 3		 -0.58 0.32 -0.31
108 AT5G02670 BEST Arabidopsis thaliana protein match is: poly(A)
polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.58 0.32 -0.34
109 AT5G07050 nodulin MtN21 /EamA-like transporter family protein 0.57 0.32 -0.34
110 AT1G42710 General transcription factor 2-related zinc finger protein 0.57 0.3 -0.3
111 AT4G39560 Galactose oxidase/kelch repeat superfamily protein 0.57 0.32 -0.31
112 AT3G15280 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: L mature pollen stage, 4
anthesis, petal differentiation and expansion stage; Has 36
Blast hits to 36 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.56 0.29 -0.31
113 AT3G10340 phenylalanine ammonia-lyase 4 phenylalanine ammonia-lyase 4 0.56 0.32 -0.34
114 AT2G25270 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
18 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.56 0.32 -0.3
115 AT5G19870 Family of unknown function (DUF716) 0.56 0.31 -0.31
116 AT1G50200 Alanyl-tRNA synthetase ACD, Alanyl-tRNA synthetase 0.56 0.34 -0.32
117 AT3G61900 SAUR-like auxin-responsive protein family 0.56 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
118 C0211 PR_MST_2158.8 - - - 0.58 0.42 -0.47