AT1G09530 : PHYTOCHROME-ASSOCIATED PROTEIN 3
Query Information
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AGICode AT1G09530
Description phytochrome interacting factor 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G09530 phytochrome interacting factor 3 PHYTOCHROME-ASSOCIATED PROTEIN 3,
phytochrome interacting factor 3,
PHOTOCURRENT 1		 1 0.31 -0.32
2 AT3G18080 B-S glucosidase 44 B-S glucosidase 44 0.82 0.31 -0.32
3 AT3G26300 cytochrome P450, family 71, subfamily B, polypeptide 34 cytochrome P450, family 71,
subfamily B, polypeptide 34		 0.76 0.32 -0.33
4 AT1G62290 Saposin-like aspartyl protease family protein 0.74 0.33 -0.32
5 AT3G49845 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 WINDHOSE 3 -0.74 0.33 -0.31
6 AT2G21650 Homeodomain-like superfamily protein ARABIDOPSIS RAD-LIKE 2, MATERNAL
EFFECT EMBRYO ARREST 3,
RADIALIS-LIKE SANT/MYB 1		 -0.72 0.32 -0.32
7 AT5G47770 farnesyl diphosphate synthase 1 farnesyl diphosphate synthase 1 -0.72 0.33 -0.34
8 AT2G28670 Disease resistance-responsive (dirigent-like protein)
family protein		 ENHANCED SUBERIN 1 -0.72 0.32 -0.31
9 AT2G39430 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.72 0.31 -0.31
10 AT5G02480 HSP20-like chaperones superfamily protein 0.71 0.3 -0.32
11 AT3G25110 fatA acyl-ACP thioesterase fatA acyl-ACP thioesterase, fatA
acyl-ACP thioesterase		 -0.71 0.31 -0.32
12 AT2G39400 alpha/beta-Hydrolases superfamily protein 0.71 0.31 -0.3
13 AT1G60160 Potassium transporter family protein 0.71 0.32 -0.34
14 AT5G57240 OSBP(oxysterol binding protein)-related protein 4C OSBP(oxysterol binding
protein)-related protein 4C		 0.71 0.31 -0.33
15 AT3G52340 sucrose-6F-phosphate phosphohydrolase 2 SUCROSE-PHOSPHATASE 2,
sucrose-6F-phosphate
phosphohydrolase 2		 0.7 0.34 -0.31
16 AT1G64590 NAD(P)-binding Rossmann-fold superfamily protein -0.7 0.33 -0.33
17 AT5G64280 dicarboxylate transporter 2.2 dicarboxylate transporter 2.2 0.7 0.29 -0.32
18 AT1G09520 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, PHD-type, conserved site
(InterPro:IPR019786); BEST Arabidopsis thaliana protein
match is: PHD finger family protein (TAIR:AT3G17460.1); Has
56 Blast hits to 56 proteins in 17 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.7 0.32 -0.33
19 AT1G28130 Auxin-responsive GH3 family protein GH3.17 -0.7 0.3 -0.33
20 AT3G25585 aminoalcoholphosphotransferase aminoalcoholphosphotransferase,
ATAAPT2		 -0.69 0.29 -0.3
21 AT5G51030 NAD(P)-binding Rossmann-fold superfamily protein -0.69 0.29 -0.31
22 AT5G59960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.68 0.3 -0.31
23 AT5G61050 histone deacetylase-related / HD-related 0.67 0.3 -0.31
24 AT1G29240 Protein of unknown function (DUF688) 0.67 0.31 -0.29
25 AT5G60660 plasma membrane intrinsic protein 2;4 plasma membrane intrinsic protein
2;4, PIP2F		 -0.66 0.31 -0.31
26 AT1G48320 Thioesterase superfamily protein 0.66 0.3 -0.31
27 AT2G36470 Plant protein of unknown function (DUF868) 0.66 0.3 -0.32
28 AT2G45400 NAD(P)-binding Rossmann-fold superfamily protein BEN1 -0.66 0.3 -0.32
29 AT5G03510 C2H2-type zinc finger family protein -0.65 0.3 -0.3
30 AT1G50460 hexokinase-like 1 ATHKL1, hexokinase-like 1 -0.65 0.34 -0.31
31 AT2G35770 serine carboxypeptidase-like 28 serine carboxypeptidase-like 28 -0.65 0.32 -0.32
32 AT5G06530 ABC-2 type transporter family protein ATP-binding cassette G22,
Arabidopsis thaliana ATP-binding
cassette G22		 0.65 0.31 -0.33
33 AT2G45450 protein binding LITTLE ZIPPER 1 0.65 0.3 -0.32
34 AT5G28300 Duplicated homeodomain-like superfamily protein 0.65 0.33 -0.32
35 AT1G03520 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.65 0.32 -0.31
36 AT3G24110 Calcium-binding EF-hand family protein -0.64 0.31 -0.32
37 AT5G66110 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 27		 0.64 0.31 -0.32
38 AT1G52700 alpha/beta-Hydrolases superfamily protein 0.64 0.32 -0.31
39 AT5G44260 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.64 0.34 -0.29
40 AT4G11820 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase /
3-hydroxy-3-methylglutaryl coenzyme A synthase		 FLAKY POLLEN 1,
HYDROXYMETHYLGLUTARYL-COA
SYNTHASE, MVA1		 -0.64 0.35 -0.31
41 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 -0.63 0.34 -0.34
42 AT3G61460 brassinosteroid-responsive RING-H2 brassinosteroid-responsive RING-H2 0.63 0.31 -0.31
43 AT4G26320 arabinogalactan protein 13 arabinogalactan protein 13 -0.63 0.33 -0.31
44 AT1G04310 ethylene response sensor 2 ethylene response sensor 2 0.63 0.3 -0.3
45 AT1G74650 myb domain protein 31 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 31, ATY13, myb domain
protein 31		 0.63 0.32 -0.31
46 AT4G37400 cytochrome P450, family 81, subfamily F, polypeptide 3 cytochrome P450, family 81,
subfamily F, polypeptide 3		 -0.63 0.35 -0.31
47 AT1G71870 MATE efflux family protein -0.63 0.3 -0.33
48 AT5G43310 COP1-interacting protein-related 0.63 0.31 -0.32
49 AT2G32990 glycosyl hydrolase 9B8 glycosyl hydrolase 9B8, glycosyl
hydrolase 9B8		 -0.62 0.31 -0.31
50 AT4G36030 armadillo repeat only 3 armadillo repeat only 3 -0.62 0.32 -0.33
51 AT4G29270 HAD superfamily, subfamily IIIB acid phosphatase -0.62 0.32 -0.32
52 AT4G11190 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.62 0.29 -0.31
53 AT3G03980 NAD(P)-binding Rossmann-fold superfamily protein 0.62 0.31 -0.33
54 AT4G18975 Pentatricopeptide repeat (PPR) superfamily protein 0.62 0.32 -0.33
55 AT2G35380 Peroxidase superfamily protein -0.62 0.32 -0.31
56 AT5G63850 amino acid permease 4 amino acid permease 4 -0.62 0.32 -0.35
57 AT3G02200 Proteasome component (PCI) domain protein -0.62 0.32 -0.31
58 AT2G39980 HXXXD-type acyl-transferase family protein 0.61 0.33 -0.32
59 AT1G60220 UB-like protease 1D OVERLY TOLERANT TO SALT 1, UB-like
protease 1D		 0.61 0.32 -0.3
60 AT3G56720 unknown protein; Has 6239 Blast hits to 4635 proteins in
365 species: Archae - 6; Bacteria - 230; Metazoa - 3389;
Fungi - 659; Plants - 656; Viruses - 13; Other Eukaryotes -
1286 (source: NCBI BLink).		 0.61 0.31 -0.3
61 AT5G13050 5-formyltetrahydrofolate cycloligase 5-formyltetrahydrofolate
cycloligase		 0.61 0.32 -0.31
62 AT5G63860 Regulator of chromosome condensation (RCC1) family protein UVB-RESISTANCE 8 0.61 0.32 -0.33
63 AT2G46060 transmembrane protein-related 0.61 0.31 -0.29
64 AT5G09900 26S proteasome regulatory subunit, putative (RPN5) EMBRYO DEFECTIVE 2107, MARIPOSA,
REGULATORY PARTICLE NON-ATPASE
SUBUNIT 5A		 -0.61 0.3 -0.34
65 AT4G03140 NAD(P)-binding Rossmann-fold superfamily protein 0.61 0.33 -0.32
66 AT2G30210 laccase 3 laccase 3 -0.61 0.31 -0.34
67 AT3G53510 ABC-2 type transporter family protein ATP-binding cassette G20 -0.61 0.31 -0.3
68 AT5G54380 protein kinase family protein THESEUS1 -0.61 0.3 -0.31
69 AT4G04955 allantoinase allantoinase, allantoinase -0.61 0.31 -0.31
70 AT3G61440 cysteine synthase C1 BETA-SUBSTITUTED ALA SYNTHASE 3;1,
CYSTEINE SYNTHASE C1, cysteine
synthase C1		 0.61 0.29 -0.32
71 AT3G50500 SNF1-related protein kinase 2.2 SNF1-RELATED PROTEIN KINASE 2-2,
SNF1-related protein kinase 2.2,
SNF1-RELATED PROTEIN KINASE 2-2,
SRK2D		 0.61 0.31 -0.3
72 AT2G02610 Cysteine/Histidine-rich C1 domain family protein -0.61 0.33 -0.33
73 AT3G24070 Zinc knuckle (CCHC-type) family protein 0.6 0.31 -0.31
74 AT1G05530 UDP-glucosyl transferase 75B2 UDP-GLUCOSYL TRANSFERASE 2,
UDP-glucosyl transferase 75B2		 -0.6 0.31 -0.32
75 AT1G18140 laccase 1 ATLAC1, laccase 1 -0.6 0.33 -0.28
76 AT3G20130 cytochrome P450, family 705, subfamily A, polypeptide 22 cytochrome P450, family 705,
subfamily A, polypeptide 22,
gravity persistence signal 1		 -0.6 0.31 -0.32
77 AT5G44550 Uncharacterised protein family (UPF0497) -0.6 0.32 -0.3
78 AT1G76340 golgi nucleotide sugar transporter 3 golgi nucleotide sugar transporter
3		 -0.6 0.31 -0.32
79 AT5G19850 alpha/beta-Hydrolases superfamily protein 0.6 0.32 -0.29
80 AT1G76090 sterol methyltransferase 3 sterol methyltransferase 3 -0.6 0.33 -0.32
81 AT2G42620 RNI-like superfamily protein MORE AXILLARY BRANCHES 2, ORESARA
9, PLEIOTROPIC PHOTOSIGNALING		 0.59 0.32 -0.31
82 AT5G16530 Auxin efflux carrier family protein PIN-FORMED 5 -0.59 0.35 -0.31
83 AT5G17780 alpha/beta-Hydrolases superfamily protein 0.59 0.31 -0.3
84 AT1G14890 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.59 0.31 -0.29
85 AT4G20230 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.59 0.32 -0.31
86 AT1G71980 Protease-associated (PA) RING/U-box zinc finger family
protein		 0.59 0.33 -0.3
87 AT2G01950 BRI1-like 2 BRI1-like 2, VASCULAR HIGHWAY 1 -0.59 0.3 -0.32
88 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.59 0.32 -0.33
89 AT5G65530 Protein kinase superfamily protein -0.59 0.32 -0.3
90 AT4G39770 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
H		 -0.59 0.33 -0.32
91 AT3G23090 TPX2 (targeting protein for Xklp2) protein family -0.59 0.32 -0.3
92 AT5G65610 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.59 0.32 -0.31
93 AT3G14940 phosphoenolpyruvate carboxylase 3 phosphoenolpyruvate carboxylase 3,
phosphoenolpyruvate carboxylase 3		 -0.59 0.29 -0.32
94 AT1G07390 receptor like protein 1 receptor like protein 1, receptor
like protein 1		 0.59 0.31 -0.29
95 AT2G30460 Nucleotide/sugar transporter family protein -0.59 0.32 -0.31
96 AT4G36610 alpha/beta-Hydrolases superfamily protein -0.58 0.32 -0.32
97 AT5G24410 6-phosphogluconolactonase 4 6-phosphogluconolactonase 4 -0.58 0.3 -0.31
98 AT5G10430 arabinogalactan protein 4 arabinogalactan protein 4, ATAGP4 -0.58 0.35 -0.32
99 AT1G53830 pectin methylesterase 2 pectin methylesterase 2, pectin
methylesterase 2		 -0.58 0.32 -0.31
100 AT5G67360 Subtilase family protein ARA12 0.58 0.33 -0.31
101 AT2G26830 Protein kinase superfamily protein embryo defective 1187 -0.58 0.32 -0.33
102 AT2G38530 lipid transfer protein 2 cell growth defect factor-3, LP2,
lipid transfer protein 2		 0.57 0.31 -0.33
103 AT1G54070 Dormancy/auxin associated family protein 0.57 0.31 -0.3
104 AT1G55030 RNI-like superfamily protein -0.57 0.32 -0.31
105 AT4G26090 NB-ARC domain-containing disease resistance protein RESISTANT TO P. SYRINGAE 2 0.57 0.3 -0.32
106 AT5G44150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 13 growth stages; Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink).		 0.57 0.32 -0.31
107 AT5G19410 ABC-2 type transporter family protein ATP-binding cassette G23 -0.57 0.33 -0.35
108 AT1G50430 Ergosterol biosynthesis ERG4/ERG24 family DELTA5,7-STEROL DELTA7 REDUCTASE,
DWARF 5, LEPIDA, PARVA, STEROL
DELTA7 REDUCTASE		 -0.57 0.33 -0.34
109 AT5G36140 cytochrome P450, family 716, subfamily A, polypeptide 2 cytochrome P450, family 716,
subfamily A, polypeptide 2		 -0.57 0.31 -0.31
110 AT3G55030 phosphatidylglycerolphosphate synthase 2 phosphatidylglycerolphosphate
synthase 2		 0.57 0.31 -0.33
111 AT1G73160 UDP-Glycosyltransferase superfamily protein -0.56 0.31 -0.31
112 AT4G24140 alpha/beta-Hydrolases superfamily protein -0.56 0.35 -0.3
113 AT1G51840 protein kinase-related -0.56 0.34 -0.34
114 AT1G70170 matrix metalloproteinase matrix metalloproteinase -0.56 0.28 -0.32
115 AT1G67865 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67860.1); Has 13 Blast hits
to 13 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.3 -0.32
116 AT1G54330 NAC domain containing protein 20 NAC domain containing protein 20,
NAC domain containing protein 20		 -0.56 0.32 -0.31
117 AT2G34560 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.56 0.31 -0.3
118 AT5G18970 AWPM-19-like family protein -0.56 0.33 -0.31
119 AT3G52360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast
hits to 34 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.32 -0.29
120 AT3G59690 IQ-domain 13 IQ-domain 13 -0.55 0.32 -0.33
121 AT5G40250 RING/U-box superfamily protein -0.55 0.35 -0.33
122 AT1G56100 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.55 0.32 -0.35
123 AT3G59370 Vacuolar calcium-binding protein-related -0.55 0.33 -0.3
124 AT2G43390 unknown protein; Has 7 Blast hits to 7 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.33 -0.32
125 AT2G02310 phloem protein 2-B6 phloem protein 2-B6, phloem
protein 2-B6		 -0.55 0.3 -0.28
126 AT4G13440 Calcium-binding EF-hand family protein -0.55 0.33 -0.3
127 AT5G01560 lectin receptor kinase a4.3 lectin receptor kinase a4.3 -0.55 0.33 -0.31
128 AT4G17215 Pollen Ole e 1 allergen and extensin family protein -0.55 0.33 -0.35
129 AT3G05890 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2B -0.55 0.33 -0.32
130 AT3G22400 PLAT/LH2 domain-containing lipoxygenase family protein Arabidopsis thaliana lipoxygenase
5, LOX5		 -0.55 0.29 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
131 C0161 MST_1566.3 - - - 0.74 0.45 -0.44
132 C0163 MST_1589.2 - - - 0.71 0.47 -0.45
133 C0175 MST_2379.9 - - - 0.7 0.49 -0.49
134 C0160 MST_1509.5 - - - 0.7 0.46 -0.44
135 C0165 MST_1688.6 - - - 0.67 0.43 -0.45
136 C0226 Raffinose pentahydrate D-(+)-Raffinose pentahydrate - galactolipid biosynthesis suppression,
polysaccharide biosynthesis 		-0.59 0.3 -0.31