AT1G04610 : YUCCA 3
Query Information
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AGICode AT1G04610
Description YUCCA 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G04610 YUCCA 3 YUCCA 3 1 0.3 -0.3
2 AT2G24980 Proline-rich extensin-like family protein extensin 6 0.79 0.3 -0.33
3 AT1G32190 alpha/beta-Hydrolases superfamily protein 0.76 0.31 -0.28
4 AT4G28850 xyloglucan endotransglucosylase/hydrolase 26 ATXTH26, xyloglucan
endotransglucosylase/hydrolase 26		 0.75 0.31 -0.32
5 AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily 0.75 0.31 -0.3
6 AT5G35190 proline-rich extensin-like family protein extensin 13 0.74 0.3 -0.29
7 AT2G19590 ACC oxidase 1 ACC oxidase 1, ATACO1 0.74 0.33 -0.33
8 AT1G33800 Protein of unknown function (DUF579) 0.73 0.31 -0.31
9 AT5G49870 Mannose-binding lectin superfamily protein 0.73 0.32 -0.31
10 AT3G21510 histidine-containing phosphotransmitter 1 histidine-containing
phosphotransmitter 1		 0.73 0.31 -0.32
11 AT5G67400 root hair specific 19 root hair specific 19 0.73 0.32 -0.33
12 AT4G40090 arabinogalactan protein 3 arabinogalactan protein 3 0.73 0.32 -0.34
13 AT2G44790 uclacyanin 2 uclacyanin 2 0.73 0.31 -0.31
14 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 0.73 0.33 -0.31
15 AT5G06630 proline-rich extensin-like family protein 0.72 0.31 -0.31
16 AT5G54040 Cysteine/Histidine-rich C1 domain family protein 0.72 0.31 -0.32
17 AT3G10710 root hair specific 12 root hair specific 12 0.72 0.33 -0.32
18 AT1G30870 Peroxidase superfamily protein 0.72 0.31 -0.29
19 AT1G54970 proline-rich protein 1 proline-rich protein 1,
proline-rich protein 1, ROOT HAIR
SPECIFIC 7		 0.72 0.31 -0.33
20 AT1G62770 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.72 0.33 -0.32
21 AT3G49960 Peroxidase superfamily protein 0.72 0.31 -0.32
22 AT4G24630 DHHC-type zinc finger family protein -0.71 0.32 -0.32
23 AT5G01610 Protein of unknown function, DUF538 0.71 0.31 -0.32
24 AT5G14690 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits
to 86 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.31 -0.33
25 AT4G02270 root hair specific 13 root hair specific 13 0.71 0.35 -0.32
26 AT3G55720 Protein of unknown function (DUF620) 0.71 0.32 -0.3
27 AT4G04750 Major facilitator superfamily protein -0.7 0.32 -0.32
28 AT3G54590 hydroxyproline-rich glycoprotein hydroxyproline-rich glycoprotein,
hydroxyproline-rich glycoprotein		 0.7 0.31 -0.32
29 AT5G25220 KNOTTED1-like homeobox gene 3 KNOTTED1-like homeobox gene 3 -0.7 0.31 -0.32
30 AT2G32270 zinc transporter 3 precursor zinc transporter 3 precursor 0.7 0.31 -0.34
31 AT1G12950 root hair specific 2 root hair specific 2 0.7 0.31 -0.32
32 AT2G47540 Pollen Ole e 1 allergen and extensin family protein 0.7 0.31 -0.33
33 AT5G58750 NAD(P)-binding Rossmann-fold superfamily protein 0.7 0.32 -0.31
34 AT4G30420 nodulin MtN21 /EamA-like transporter family protein 0.69 0.3 -0.31
35 AT2G20520 FASCICLIN-like arabinogalactan 6 FASCICLIN-like arabinogalactan 6 0.69 0.31 -0.3
36 AT5G63660 Scorpion toxin-like knottin superfamily protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
74, PDF2.5		 0.69 0.31 -0.3
37 AT1G30160 Protein of unknown function (DUF295) -0.68 0.32 -0.33
38 AT1G20900 Predicted AT-hook DNA-binding family protein AT-hook motif nuclear-localized
protein 27, ESCAROLA, ORESARA 7		 0.68 0.32 -0.33
39 AT4G38410 Dehydrin family protein 0.68 0.31 -0.29
40 AT5G06640 Proline-rich extensin-like family protein extensin 10 0.68 0.32 -0.31
41 AT4G27435 Protein of unknown function (DUF1218) -0.68 0.32 -0.31
42 AT1G75540 salt tolerance homolog2 B BOX 21, B-box domain protein 21,
long hypocotyl under shade, salt
tolerance homolog2		 0.68 0.32 -0.3
43 AT2G41970 Protein kinase superfamily protein 0.68 0.34 -0.33
44 AT3G43190 sucrose synthase 4 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 4, sucrose synthase 4		 0.68 0.33 -0.32
45 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 -0.68 0.32 -0.31
46 AT1G49390 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.67 0.32 -0.28
47 AT1G78200 Protein phosphatase 2C family protein -0.67 0.33 -0.31
48 AT3G01730 unknown protein; Has 8 Blast hits to 8 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.67 0.31 -0.31
49 AT1G48930 glycosyl hydrolase 9C1 glycosyl hydrolase 9C1, glycosyl
hydrolase 9C1		 0.67 0.3 -0.33
50 AT5G19800 hydroxyproline-rich glycoprotein family protein 0.67 0.33 -0.32
51 AT2G32070 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.67 0.32 -0.32
52 AT5G57530 xyloglucan endotransglucosylase/hydrolase 12 AtXTH12, xyloglucan
endotransglucosylase/hydrolase 12		 0.67 0.32 -0.31
53 AT4G39675 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.67 0.33 -0.31
54 AT4G13210 Pectin lyase-like superfamily protein 0.67 0.31 -0.32
55 AT4G34480 O-Glycosyl hydrolases family 17 protein -0.66 0.32 -0.32
56 AT3G02500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits
to 49 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.31 -0.32
57 AT4G19680 iron regulated transporter 2 IRON REGULATED TRANSPORTER 2, iron
regulated transporter 2		 0.66 0.31 -0.32
58 AT5G27920 F-box family protein 0.66 0.31 -0.31
59 AT1G08830 copper/zinc superoxide dismutase 1 copper/zinc superoxide dismutase 1 0.66 0.32 -0.3
60 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.66 0.3 -0.32
61 AT5G60760 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.66 0.33 -0.32
62 AT2G07020 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.66 0.31 -0.32
63 AT3G51410 Arabidopsis protein of unknown function (DUF241) 0.66 0.32 -0.28
64 AT3G23190 HR-like lesion-inducing protein-related 0.66 0.32 -0.3
65 AT4G26010 Peroxidase superfamily protein 0.66 0.31 -0.3
66 AT5G07890 myosin heavy chain-related -0.66 0.3 -0.3
67 AT4G08410 Proline-rich extensin-like family protein 0.66 0.34 -0.33
68 AT2G45050 GATA transcription factor 2 GATA transcription factor 2 0.66 0.32 -0.3
69 AT1G33330 Class I peptide chain release factor -0.65 0.32 -0.3
70 AT5G24313 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.65 0.33 -0.35
71 AT5G05500 Pollen Ole e 1 allergen and extensin family protein MOP10 0.65 0.32 -0.29
72 AT5G22310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11590.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.65 0.32 -0.32
73 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 -0.65 0.32 -0.32
74 AT4G29180 root hair specific 16 root hair specific 16 0.65 0.33 -0.31
75 AT5G44610 microtubule-associated protein 18 microtubule-associated protein 18,
PLASMA MEMBRANE ASSOCIATED
CA2+-BINDING PROTEIN-2		 0.65 0.3 -0.31
76 AT1G34510 Peroxidase superfamily protein 0.65 0.32 -0.33
77 AT5G20240 K-box region and MADS-box transcription factor family
protein 		PISTILLATA 0.64 0.3 -0.33
78 AT2G21340 MATE efflux family protein -0.64 0.35 -0.32
79 AT2G19780 Leucine-rich repeat (LRR) family protein -0.64 0.34 -0.33
80 AT5G57540 xyloglucan endotransglucosylase/hydrolase 13 AtXTH13, xyloglucan
endotransglucosylase/hydrolase 13		 0.64 0.32 -0.31
81 AT4G30640 RNI-like superfamily protein 0.64 0.29 -0.32
82 AT5G13850 nascent polypeptide-associated complex subunit alpha-like
protein 3		 nascent polypeptide-associated
complex subunit alpha-like protein
3		 0.64 0.33 -0.34
83 AT3G54040 PAR1 protein 0.64 0.33 -0.31
84 AT5G23240 DNAJ heat shock N-terminal domain-containing protein -0.64 0.31 -0.32
85 AT5G20820 SAUR-like auxin-responsive protein family 0.64 0.31 -0.3
86 AT3G43430 RING/U-box superfamily protein 0.64 0.32 -0.32
87 AT1G52070 Mannose-binding lectin superfamily protein 0.63 0.33 -0.33
88 AT3G01140 myb domain protein 106 myb domain protein 106, myb domain
protein 106, NOECK		 -0.63 0.32 -0.32
89 AT3G62680 proline-rich protein 3 ARABIDOPSIS THALIANA PROLINE-RICH
PROTEIN 3, proline-rich protein 3		 0.63 0.3 -0.33
90 AT2G18060 vascular related NAC-domain protein 1 Arabidopsis NAC domain containing
protein 37, vascular related
NAC-domain protein 1		 0.63 0.31 -0.31
91 AT1G29270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits
to 98 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.32 -0.31
92 AT3G23030 indole-3-acetic acid inducible 2 indole-3-acetic acid inducible 2 0.63 0.3 -0.31
93 AT3G59900 auxin-regulated gene involved in organ size AUXIN-REGULATED GENE INVOLVED IN
ORGAN SIZE		 0.63 0.33 -0.3
94 AT4G32460 Protein of unknown function, DUF642 0.63 0.32 -0.33
95 AT5G49210 unknown protein; Has 3675 Blast hits to 2315 proteins in
312 species: Archae - 2; Bacteria - 342; Metazoa - 1190;
Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes -
1742 (source: NCBI BLink).		 0.63 0.3 -0.3
96 AT2G35270 Predicted AT-hook DNA-binding family protein GIANT KILLER 0.63 0.33 -0.33
97 AT5G62280 Protein of unknown function (DUF1442) 0.63 0.29 -0.32
98 AT4G25790 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.63 0.33 -0.31
99 AT4G30670 Putative membrane lipoprotein 0.63 0.32 -0.33
100 AT1G13670 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.31 -0.31
101 AT3G07490 ARF-GAP domain 11 ARF-GAP domain 11, AtCML3,
calmodulin-like 3		 0.62 0.31 -0.3
102 AT4G26880 Stigma-specific Stig1 family protein 0.62 0.32 -0.32
103 AT1G62980 expansin A18 ATEXP18, expansin A18, ATHEXP
ALPHA 1.25, EXPANSIN 18, expansin
A18		 0.62 0.31 -0.33
104 AT4G03190 GRR1-like protein 1 AUXIN SIGNALING F BOX PROTEIN 1,
ATGRH1, GRR1-like protein 1		 0.62 0.3 -0.33
105 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.62 0.34 -0.31
106 AT3G58780 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 1, SHATTERPROOF 1 0.62 0.33 -0.32
107 AT1G33700 Beta-glucosidase, GBA2 type family protein 0.62 0.31 -0.32
108 AT1G50060 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.62 0.32 -0.32
109 AT4G25820 xyloglucan endotransglucosylase/hydrolase 14 ATXTH14, xyloglucan
endotransglucosylase/hydrolase 14,
xyloglucan endotransglycosylase 9		 0.62 0.29 -0.34
110 AT4G39190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits
to 3562 proteins in 401 species: Archae - 12; Bacteria -
497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses -
22; Other Eukaryotes - 3119 (source: NCBI BLink).		 -0.62 0.32 -0.3
111 AT3G04870 zeta-carotene desaturase PIGMENT DEFECTIVE EMBRYO 181,
SPONTANEOUS CELL DEATH 1,
zeta-carotene desaturase		 -0.62 0.32 -0.3
112 AT5G48560 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.62 0.3 -0.32
113 AT4G33510 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 3-deoxy-d-arabino-heptulosonate
7-phosphate synthase		 -0.61 0.34 -0.33
114 AT4G09340 SPla/RYanodine receptor (SPRY) domain-containing protein -0.61 0.31 -0.32
115 AT3G60190 DYNAMIN-like 1E DYNAMIN-like 1E, ARABIDOPSIS
DYNAMIN-LIKE 4, DYNAMIN-LIKE
PROTEIN 2, DYNAMIN-like 1E,
DYNAMIN-RELATED PROTEIN 1E,
ENHANCED DISEASE RESISTANCE 3		 -0.6 0.3 -0.3
116 AT3G16280 Integrase-type DNA-binding superfamily protein -0.6 0.32 -0.34
117 AT2G37900 Major facilitator superfamily protein -0.6 0.3 -0.32
118 AT4G09950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.59 0.31 -0.31
119 AT1G25290 RHOMBOID-like protein 10 RHOMBOID-like protein 10,
RHOMBOID-like protein 10		 -0.58 0.28 -0.32
120 AT5G07730 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G61360.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.31 -0.33
121 AT3G02830 zinc finger protein 1 zinc finger protein 1 -0.58 0.33 -0.32
122 AT5G04440 Protein of unknown function (DUF1997) -0.58 0.34 -0.33
123 AT3G24010 RING/FYVE/PHD zinc finger superfamily protein ARABIDOPSIS THALIANA INHIBITOR OF
GROWTH 1, INHIBITOR OF GROWTH 1		 -0.58 0.3 -0.33
124 AT5G63060 Sec14p-like phosphatidylinositol transfer family protein -0.58 0.32 -0.3
125 AT1G73700 MATE efflux family protein -0.57 0.31 -0.31
126 AT3G33073 transposable element gene -0.57 0.32 -0.31
127 AT1G70820 phosphoglucomutase, putative / glucose phosphomutase,
putative		 -0.57 0.32 -0.3
128 AT3G49300 proline-rich family protein -0.57 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine 0.78 0.44 -0.43 C0031
130 C0071 Cyanidin 3-O-[2''-O-(6'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-(6''''-O-malonyl) glucoside - - - -0.78 0.45 -0.47
131 C0199 Phosphatidylethanolamine-36:6 - Phosphatidylethanolamine-36:6 phospholipid biosynthesis II,
linoleate biosynthesis I,
phosphatidylethanolamine biosynthesis I,
phosphatidylethanolamine biosynthesis II,
glutathione redox reactions I 		0.78 0.49 -0.48 C0199
132 C0070 Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl)xylosyl) 6''-O-(p-O-coumaroyl) glucoside] 5-O-[6''''-O-(malonyl) glucoside] - - - -0.72 0.45 -0.44
133 C0232 Shikimic acid - Shikimate phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis 		-0.69 0.29 -0.3 C0232
134 C0121 Isoheptylglucosinolate - - - 0.69 0.44 -0.43
135 C0211 PR_MST_2158.8 - - - -0.63 0.45 -0.46