AT1G04590 : -
Query Information
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AGICode AT1G04590
Description BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G04590 BEST Arabidopsis thaliana protein match is:
Pentatricopeptide repeat (PPR) superfamily protein
(TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 1 0.3 -0.32
2 AT2G20740 Tetraspanin family protein -0.81 0.3 -0.31
3 AT1G06790 RNA polymerase Rpb7 N-terminal domain-containing protein 0.8 0.31 -0.32
4 AT4G05400 copper ion binding 0.78 0.32 -0.31
5 AT2G40460 Major facilitator superfamily protein -0.78 0.31 -0.31
6 AT5G47100 calcineurin B-like protein 9 ATCBL9, calcineurin B-like protein
9		 0.77 0.31 -0.32
7 AT3G07360 plant U-box 9 ARABIDOPSIS THALIANA PLANT U-BOX
9, plant U-box 9		 -0.76 0.31 -0.33
8 AT1G24280 glucose-6-phosphate dehydrogenase 3 glucose-6-phosphate dehydrogenase
3		 0.76 0.32 -0.31
9 AT3G47550 RING/FYVE/PHD zinc finger superfamily protein -0.76 0.33 -0.31
10 AT1G27200 Domain of unknown function (DUF23) -0.76 0.32 -0.3
11 AT2G22430 homeobox protein 6 homeobox protein 6, homeobox
protein 6		 -0.76 0.31 -0.32
12 AT5G27280 Zim17-type zinc finger protein -0.76 0.3 -0.33
13 AT5G13200 GRAM domain family protein -0.75 0.31 -0.32
14 AT1G71950 Proteinase inhibitor, propeptide -0.75 0.31 -0.33
15 AT3G23280 XB3 ortholog 5 in Arabidopsis thaliana XB3 ortholog 5 in Arabidopsis
thaliana		 -0.74 0.32 -0.31
16 AT5G52660 Homeodomain-like superfamily protein -0.74 0.31 -0.29
17 AT3G29670 HXXXD-type acyl-transferase family protein phenolic glucoside
malonyltransferase 2		 -0.74 0.31 -0.32
18 AT2G41040 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.32 -0.3
19 AT3G06170 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.73 0.31 -0.32
20 AT3G07580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G48335.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.73 0.32 -0.32
21 AT5G01470 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.73 0.32 -0.31
22 AT5G24830 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.3 -0.32
23 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 -0.73 0.31 -0.31
24 AT5G35460 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2838 (InterPro:IPR021261); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.73 0.34 -0.3
25 AT2G33700 Protein phosphatase 2C family protein -0.73 0.33 -0.33
26 AT1G18870 isochorismate synthase 2 ARABIDOPSIS ISOCHORISMATE SYNTHASE
2, isochorismate synthase 2		 -0.72 0.31 -0.32
27 AT5G52580 RabGAP/TBC domain-containing protein -0.72 0.31 -0.32
28 AT4G00710 BR-signaling kinase 3 BR-signaling kinase 3 0.72 0.32 -0.31
29 AT5G09620 Octicosapeptide/Phox/Bem1p family protein -0.72 0.34 -0.31
30 AT1G12020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits
to 88 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.72 0.31 -0.31
31 AT1G68910 WPP domain-interacting protein 2 WPP domain-interacting protein 2 -0.72 0.33 -0.3
32 AT1G69210 Uncharacterised protein family UPF0090 0.71 0.32 -0.32
33 AT4G22270 Protein of unknown function (DUF3537) ARABIDOPSIS MEMBRANE RELATED
BIGGER1, MEMBRANE RELATED BIGGER1		 -0.71 0.33 -0.3
34 AT5G41810 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G64340.1); Has 876 Blast hits
to 690 proteins in 132 species: Archae - 0; Bacteria - 38;
Metazoa - 180; Fungi - 112; Plants - 59; Viruses - 2; Other
Eukaryotes - 485 (source: NCBI BLink).		 -0.71 0.29 -0.31
35 AT2G27140 HSP20-like chaperones superfamily protein -0.71 0.32 -0.3
36 AT5G48370 Thioesterase/thiol ester dehydrase-isomerase superfamily
protein		 -0.71 0.33 -0.33
37 AT5G47120 BAX inhibitor 1 ARABIDOPSIS BAX INHIBITOR 1, BAX
inhibitor 1, BI-1, BAX inhibitor 1		 -0.71 0.34 -0.32
38 AT5G11600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G19990.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.7 0.3 -0.34
39 AT2G38790 unknown protein; Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.7 0.33 -0.34
40 AT1G73640 RAB GTPase homolog A6A RAB GTPase homolog A6A, RAB GTPase
homolog A6A		 0.7 0.31 -0.32
41 AT1G20410 Pseudouridine synthase family protein 0.7 0.32 -0.32
42 AT4G22740 glycine-rich protein -0.7 0.32 -0.32
43 AT2G03540 transposable element gene -0.7 0.31 -0.3
44 AT3G05260 NAD(P)-binding Rossmann-fold superfamily protein -0.7 0.3 -0.33
45 AT4G02340 alpha/beta-Hydrolases superfamily protein -0.69 0.33 -0.3
46 AT5G40170 receptor like protein 54 receptor like protein 54, receptor
like protein 54		 -0.69 0.32 -0.29
47 AT1G29395 COLD REGULATED 314 INNER MEMBRANE 1 COLD REGULATED 314 THYLAKOID
MEMBRANE 1, COLD REGULATED 314
INNER MEMBRANE 1, cold regulated
414 thylakoid membrane 1		 -0.69 0.3 -0.32
48 AT1G69690 TCP family transcription factor AtTCP15, TEOSINTE
BRANCHED1/CYCLOIDEA/PCF 15		 -0.69 0.33 -0.3
49 AT1G28200 FH interacting protein 1 FH interacting protein 1 -0.69 0.35 -0.31
50 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 -0.69 0.31 -0.29
51 AT2G42450 alpha/beta-Hydrolases superfamily protein 0.69 0.33 -0.33
52 AT4G18530 Protein of unknown function (DUF707) -0.69 0.35 -0.3
53 AT5G13570 decapping 2 ATDCP2, decapping 2, TRIDENT -0.68 0.31 -0.34
54 AT1G11190 bifunctional nuclease i bifunctional nuclease i,
ENDONUCLEASE 1		 -0.68 0.3 -0.34
55 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.68 0.32 -0.31
56 AT1G29390 cold regulated 314 thylakoid membrane 2 cold regulated 314 thylakoid
membrane 2, COLD REGULATED 314
INNER MEMBRANE 2		 -0.68 0.31 -0.31
57 AT4G11740 Ubiquitin-like superfamily protein SAY1 -0.68 0.33 -0.32
58 AT2G20350 Integrase-type DNA-binding superfamily protein -0.68 0.33 -0.32
59 AT2G47790 Transducin/WD40 repeat-like superfamily protein 0.68 0.33 -0.31
60 AT1G34220 Regulator of Vps4 activity in the MVB pathway protein -0.68 0.32 -0.35
61 AT1G64970 gamma-tocopherol methyltransferase gamma-tocopherol
methyltransferase, TMT1, VITAMIN E
DEFICIENT 4		 -0.68 0.32 -0.32
62 AT4G21560 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting 28,
vacuolar protein
sorting-associated protein 28
homolog 1		 -0.68 0.33 -0.3
63 AT4G03410 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.68 0.33 -0.33
64 AT1G29060 Target SNARE coiled-coil domain protein -0.68 0.32 -0.29
65 AT3G12250 TGACG motif-binding factor 6 BZIP45, TGACG motif-binding factor
6		 -0.68 0.32 -0.31
66 AT2G29070 Ubiquitin fusion degradation UFD1 family protein -0.67 0.31 -0.32
67 AT4G33810 Glycosyl hydrolase superfamily protein -0.67 0.34 -0.31
68 AT5G13640 phospholipid:diacylglycerol acyltransferase ARABIDOPSIS THALIANA
PHOSPHOLIPID:DIACYLGLYCEROL
ACYLTRANSFERASE,
phospholipid:diacylglycerol
acyltransferase,
PHOSPHOLIPID:DIACYLGLYCEROL
ACYLTRANSFERASE 1		 -0.67 0.33 -0.32
69 AT3G14050 RELA/SPOT homolog 2 RELA-SPOT HOMOLOG 2, RELA/SPOT
HOMOLOG 2, RELA/SPOT homolog 2		 -0.67 0.3 -0.31
70 AT3G55740 proline transporter 2 PROLINE TRANSPORTER 2, proline
transporter 2		 -0.67 0.31 -0.31
71 AT1G02050 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 6 0.67 0.31 -0.34
72 AT4G16780 homeobox protein 2 homeobox protein 2, ARABIDOPSIS
THALIANA HOMEOBOX PROTEIN 2, HAT4,
homeobox protein 2		 -0.67 0.32 -0.31
73 AT1G78410 VQ motif-containing protein -0.67 0.31 -0.33
74 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.3 -0.33
75 AT1G76360 Protein kinase superfamily protein -0.67 0.3 -0.32
76 AT1G64050 unknown protein; Has 524 Blast hits to 342 proteins in 101
species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi -
24; Plants - 25; Viruses - 0; Other Eukaryotes - 263
(source: NCBI BLink).		 -0.67 0.3 -0.3
77 AT4G35480 RING-H2 finger A3B RING-H2 finger A3B -0.67 0.29 -0.31
78 AT5G66240 Transducin/WD40 repeat-like superfamily protein 0.67 0.3 -0.31
79 AT3G15730 phospholipase D alpha 1 PLD, phospholipase D alpha 1 -0.67 0.32 -0.32
80 AT3G57070 Glutaredoxin family protein -0.66 0.33 -0.3
81 AT1G20430 unknown protein; Has 29 Blast hits to 29 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.32 -0.31
82 AT3G12690 AGC kinase 1.5 AGC kinase 1.5 0.66 0.31 -0.32
83 AT5G27910 nuclear factor Y, subunit C8 nuclear factor Y, subunit C8 0.66 0.31 -0.32
84 AT1G33970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.66 0.31 -0.34
85 AT1G33000 transposable element gene 0.66 0.31 -0.31
86 AT3G10800 Basic-leucine zipper (bZIP) transcription factor family
protein		 BZIP28 -0.66 0.33 -0.32
87 AT5G58070 temperature-induced lipocalin TEMPERATURE-INDUCED LIPOCALIN,
temperature-induced lipocalin		 -0.66 0.3 -0.32
88 AT5G06830 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF773 (InterPro:IPR008491); Has 365 Blast
hits to 359 proteins in 109 species: Archae - 9; Bacteria -
13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0;
Other Eukaryotes - 80 (source: NCBI BLink).		 -0.66 0.33 -0.33
89 AT1G78600 light-regulated zinc finger protein 1 B-box domain protein 22, DOUBLE
B-BOX 3, light-regulated zinc
finger protein 1, SALT TOLERANCE
HOMOLOG 3		 -0.66 0.31 -0.32
90 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.66 0.33 -0.32
91 AT1G59710 Protein of unknown function (DUF569) -0.66 0.31 -0.31
92 AT5G15170 tyrosyl-DNA phosphodiesterase-related tyrosyl-DNA phosphodiesterase 1 0.66 0.31 -0.32
93 AT5G13960 SU(VAR)3-9 homolog 4 KRYPTONITE, SET DOMAIN PROTEIN 33,
SU(VAR)3-9 homolog 4		 0.66 0.31 -0.31
94 AT2G31955 cofactor of nitrate reductase and xanthine dehydrogenase 2 cofactor of nitrate reductase and
xanthine dehydrogenase 2		 -0.66 0.32 -0.32
95 AT3G43320 transposable element gene -0.66 0.32 -0.3
96 AT1G60470 galactinol synthase 4 galactinol synthase 4, galactinol
synthase 4		 -0.66 0.32 -0.33
97 AT3G26125 cytochrome P450, family 86, subfamily C, polypeptide 2 cytochrome P450, family 86,
subfamily C, polypeptide 2		 -0.66 0.32 -0.33
98 AT5G15460 membrane-anchored ubiquitin-fold protein 2 membrane-anchored ubiquitin-fold
protein 2		 0.66 0.31 -0.3
99 AT3G20560 PDI-like 5-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 12, PDI-like
5-3, PROTEIN DISULFIDE ISOMERASE
12, PDI-like 5-3		 0.66 0.31 -0.32
100 AT3G22260 Cysteine proteinases superfamily protein -0.66 0.31 -0.32
101 AT1G62990 KNOTTED-like homeobox of Arabidopsis thaliana 7 IXR11, KNOTTED-like homeobox of
Arabidopsis thaliana 7		 -0.65 0.31 -0.32
102 AT2G27260 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.65 0.32 -0.31
103 AT3G48210 CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex,
subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to
194 proteins in 72 species: Archae - 0; Bacteria - 4;
Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other
Eukaryotes - 17 (source: NCBI BLink).		 0.65 0.32 -0.3
104 AT5G62460 RING/FYVE/PHD zinc finger superfamily protein -0.65 0.32 -0.31
105 AT2G29410 metal tolerance protein B1 ATMTPB1, metal tolerance protein
B1		 -0.65 0.31 -0.33
106 AT5G15870 glycosyl hydrolase family 81 protein -0.65 0.32 -0.3
107 AT3G43700 BTB-POZ and MATH domain 6 BTB-POZ AND MATH DOMAIN 6, BTB-POZ
and MATH domain 6		 0.65 0.3 -0.29
108 AT3G18830 polyol/monosaccharide transporter 5 POLYOL TRANSPORTER 5, ARABIDOPSIS
THALIANA POLYOL/MONOSACCHARIDE
TRANSPORTER 5,
polyol/monosaccharide transporter
5		 -0.65 0.33 -0.33
109 AT1G68980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.65 0.3 -0.32
110 AT5G38170 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.65 0.34 -0.32
111 AT1G43620 UDP-Glycosyltransferase superfamily protein TRANSPARENT TESTA 15, UGT80B1 -0.65 0.32 -0.31
112 AT1G76870 BEST Arabidopsis thaliana protein match is:
sequence-specific DNA binding transcription factors
(TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in
76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi
- 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126
(source: NCBI BLink).		 0.65 0.33 -0.32
113 AT1G29980 Protein of unknown function, DUF642 0.65 0.3 -0.33
114 AT5G39850 Ribosomal protein S4 0.65 0.33 -0.31
115 AT2G38410 ENTH/VHS/GAT family protein -0.65 0.34 -0.33
116 AT3G13226 regulatory protein RecX family protein 0.64 0.34 -0.32
117 AT4G10550 Subtilase family protein 0.64 0.31 -0.31
118 AT1G72200 RING/U-box superfamily protein 0.64 0.3 -0.3
119 AT1G49370 pseudogene, similar to OSJNBa0072F16.8, blastp match of 42%
identity and 6.6e-73 P-value to
GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza
sativa (japonica cultivar-group)}		 0.63 0.3 -0.31
120 AT3G20430 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA
export protein, RNA-binding domain (InterPro:IPR019385);
Has 110 Blast hits to 110 proteins in 51 species: Archae -
0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36;
Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).		 0.63 0.3 -0.31
121 AT5G60140 AP2/B3-like transcriptional factor family protein 0.63 0.32 -0.31
122 AT3G19870 unknown protein; Has 84 Blast hits to 64 proteins in 35
species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source:
NCBI BLink).		 0.62 0.34 -0.31
123 AT1G66510 AAR2 protein family 0.62 0.3 -0.32
124 AT2G43690 Concanavalin A-like lectin protein kinase family protein 0.62 0.31 -0.33
125 AT1G53940 GDSL-motif lipase 2 GDSL-motif lipase 2 0.61 0.33 -0.34
126 AT2G06230 transposable element gene 0.61 0.32 -0.31
127 AT5G23670 long chain base2 long chain base2 0.61 0.31 -0.31
128 AT3G55190 alpha/beta-Hydrolases superfamily protein 0.61 0.31 -0.31
129 AT2G47020 Peptide chain release factor 1 0.61 0.32 -0.33
130 AT2G28660 Chloroplast-targeted copper chaperone protein 0.61 0.31 -0.32
131 AT3G63240 DNAse I-like superfamily protein 0.61 0.32 -0.31
132 AT3G01630 Major facilitator superfamily protein 0.61 0.31 -0.33