AT1G09130 : -
Query Information
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AGICode AT1G09130
Description ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G09130 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 1 0.34 -0.31
2 AT3G44620 protein tyrosine phosphatases;protein tyrosine phosphatases 0.86 0.3 -0.31
3 AT1G49970 CLP protease proteolytic subunit 1 CLP protease proteolytic subunit
1, NUCLEAR CLPP 5, SUPPRESSOR OF
VARIEGATION 2		 0.86 0.31 -0.33
4 AT4G25130 peptide met sulfoxide reductase 4 peptide met sulfoxide reductase 4 0.83 0.31 -0.29
5 AT1G78140 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.82 0.33 -0.31
6 AT1G22750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1475 (InterPro:IPR009943);
Has 185 Blast hits to 155 proteins in 21 species: Archae -
0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).		 0.82 0.32 -0.33
7 AT1G10500 chloroplast-localized ISCA-like protein chloroplast-localized ISCA-like
protein, chloroplast-localized
ISCA-like protein		 0.81 0.31 -0.31
8 AT3G57800 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.81 0.32 -0.32
9 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 0.8 0.31 -0.34
10 AT4G33350 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-IV,
translocon at the inner envelope
membrane of chloroplasts 22-IV		 0.79 0.32 -0.33
11 AT5G09230 sirtuin 2 SIRTUIN 2, sirtuin 2 0.79 0.32 -0.34
12 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.78 0.32 -0.32
13 AT2G26670 Plant haem oxygenase (decyclizing) family protein ARABIDOPSIS THALIANA HEME
OXYGENASE 1, GENOMES UNCOUPLED 2,
HEME OXYGENASE 1, HEME OXYGENASE
1, HEME OXYGENASE 6, REVERSAL OF
THE DET PHENOTYPE 4		 0.78 0.31 -0.3
14 AT1G66670 CLP protease proteolytic subunit 3 CLP protease proteolytic subunit
3, NCLPP3		 0.78 0.33 -0.3
15 AT5G19855 Chaperonin-like RbcX protein AtRbcX2, homologue of
cyanobacterial RbcX 2		 0.77 0.31 -0.3
16 AT5G06580 FAD-linked oxidases family protein 0.77 0.3 -0.34
17 AT1G64405 unknown protein; Has 13 Blast hits to 13 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.76 0.32 -0.31
18 AT2G20270 Thioredoxin superfamily protein 0.76 0.3 -0.33
19 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.76 0.31 -0.33
20 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 0.75 0.34 -0.3
21 AT2G24820 translocon at the inner envelope membrane of chloroplasts
55-II		 translocon at the inner envelope
membrane of chloroplasts 55,
translocon at the inner envelope
membrane of chloroplasts 55,
translocon at the inner envelope
membrane of chloroplasts 55-II		 0.75 0.32 -0.32
22 AT5G13720 Uncharacterised protein family (UPF0114) 0.75 0.32 -0.31
23 AT3G04870 zeta-carotene desaturase PIGMENT DEFECTIVE EMBRYO 181,
SPONTANEOUS CELL DEATH 1,
zeta-carotene desaturase		 0.75 0.31 -0.32
24 AT1G69340 appr-1-p processing enzyme family protein 0.74 0.32 -0.32
25 AT2G47390 Prolyl oligopeptidase family protein 0.74 0.34 -0.3
26 AT1G50020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
Has 72 Blast hits to 72 proteins in 27 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.74 0.32 -0.3
27 AT5G52170 homeodomain GLABROUS 7 homeodomain GLABROUS 7 -0.73 0.34 -0.31
28 AT1G51690 protein phosphatase 2A 55 kDa regulatory subunit B alpha
isoform		 protein phosphatase 2A 55 kDa
regulatory subunit B alpha
isoform, protein phosphatase 2A 55
kDa regulatory subunit B alpha
isoform		 0.73 0.31 -0.3
29 AT4G11980 nudix hydrolase homolog 14 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 14, nudix
hydrolase homolog 14, nudix
hydrolase homolog 14		 0.72 0.31 -0.33
30 AT4G16845 VEFS-Box of polycomb protein REDUCED VERNALIZATION RESPONSE 2 0.72 0.34 -0.33
31 AT5G42390 Insulinase (Peptidase family M16) family protein stromal processing peptidase 0.72 0.33 -0.33
32 AT2G28250 Protein kinase superfamily protein NCRK -0.72 0.31 -0.3
33 AT1G28290 arabinogalactan protein 31 arabinogalactan protein 31 -0.72 0.32 -0.31
34 AT2G42130 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.72 0.29 -0.3
35 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.31 -0.32
36 AT3G19170 presequence protease 1 presequence protease 1, ATZNMP,
presequence protease 1		 0.71 0.3 -0.31
37 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.71 0.31 -0.3
38 AT5G50920 CLPC homologue 1 ATHSP93-V, CLPC, CLPC homologue 1,
DE-REGULATED CAO ACCUMULATION 1,
HEAT SHOCK PROTEIN 93-V		 0.71 0.31 -0.32
39 AT2G31570 glutathione peroxidase 2 glutathione peroxidase 2,
glutathione peroxidase 2		 0.71 0.3 -0.31
40 AT1G51950 indole-3-acetic acid inducible 18 indole-3-acetic acid inducible 18 0.71 0.33 -0.33
41 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 0.71 0.29 -0.33
42 AT3G51250 Senescence/dehydration-associated protein-related 0.7 0.33 -0.32
43 AT1G07310 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.7 0.32 -0.29
44 AT2G46340 SPA (suppressor of phyA-105) protein family SUPPRESSOR OF PHYA-105 1 0.7 0.33 -0.34
45 AT3G09150 phytochromobilin:ferredoxin oxidoreductase, chloroplast /
phytochromobilin synthase (HY2)		 ARABIDOPSIS ELONGATED HYPOCOTYL 2,
GENOMES UNCOUPLED 3, ELONGATED
HYPOCOTYL 2		 0.7 0.3 -0.33
46 AT4G29670 atypical CYS HIS rich thioredoxin 2 atypical CYS HIS rich thioredoxin
2		 0.7 0.29 -0.31
47 AT2G43750 O-acetylserine (thiol) lyase B ARABIDOPSIS CYSTEINE SYNTHASE 1,
ARABIDOPSIS THALIANA CYSTEIN
SYNTHASE-B, CHLOROPLAST
O-ACETYLSERINE SULFHYDRYLASE 1,
O-acetylserine (thiol) lyase B		 0.7 0.34 -0.33
48 AT5G19540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.7 0.32 -0.3
49 AT5G10450 G-box regulating factor 6 14-3-3 PROTEIN G-BOX FACTOR14
LAMBDA, AFT1, G-box regulating
factor 6		 0.7 0.33 -0.32
50 AT1G78620 Protein of unknown function DUF92, transmembrane 0.7 0.31 -0.33
51 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 0.7 0.33 -0.29
52 AT1G26920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G69760.1); Has 47 Blast hits
to 47 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 7; Plants - 34; Viruses - 0; Other
Eukaryotes - 6 (source: NCBI BLink).		 0.7 0.31 -0.31
53 AT4G17530 RAB GTPase homolog 1C RAB GTPase homolog 1C, ATRABD2C,
RAB1C, RAB GTPase homolog 1C		 0.7 0.33 -0.32
54 AT1G13970 Protein of unknown function (DUF1336) -0.69 0.33 -0.3
55 AT3G54260 TRICHOME BIREFRINGENCE-LIKE 36 TRICHOME BIREFRINGENCE-LIKE 36 -0.69 0.33 -0.31
56 AT3G62820 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.69 0.31 -0.35
57 AT5G06800 myb-like HTH transcriptional regulator family protein -0.69 0.33 -0.31
58 AT3G63250 homocysteine methyltransferase 2 HOMOCYSTEINE METHYLTRANSFERASE-2,
HOMOCYSTEINE METHYLTRANSFERASE-2,
homocysteine methyltransferase 2		 -0.69 0.3 -0.33
59 AT3G10620 nudix hydrolase homolog 26 nudix hydrolase homolog 26, nudix
hydrolase homolog 26		 0.69 0.3 -0.31
60 AT2G17350 unknown protein; Has 119 Blast hits to 93 proteins in 40
species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi -
12; Plants - 44; Viruses - 0; Other Eukaryotes - 42
(source: NCBI BLink).		 0.69 0.3 -0.32
61 AT1G54520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1517 (InterPro:IPR010903);
Has 276 Blast hits to 275 proteins in 83 species: Archae -
0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).		 0.69 0.31 -0.33
62 AT1G28200 FH interacting protein 1 FH interacting protein 1 0.69 0.32 -0.31
63 AT1G63970 isoprenoid F isoprenoid F,
2C-METHYL-D-ERYTHRITOL
2,4-CYCLODIPHOSPHATE SYNTHASE		 0.69 0.32 -0.31
64 AT4G13010 Oxidoreductase, zinc-binding dehydrogenase family protein 0.69 0.3 -0.31
65 AT2G32040 Major facilitator superfamily protein 0.68 0.32 -0.33
66 AT5G17450 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 21		 0.68 0.33 -0.31
67 AT2G31900 myosin-like protein XIF MYOSIN 5, MYOSIN XI F, myosin-like
protein XIF		 -0.68 0.32 -0.31
68 AT5G58240 FRAGILE HISTIDINE TRIAD FRAGILE HISTIDINE TRIAD 0.68 0.3 -0.31
69 AT2G30950 FtsH extracellular protease family FTSH2, VARIEGATED 2 0.68 0.32 -0.29
70 AT1G30510 root FNR 2 root FNR 2, root FNR 2 -0.68 0.33 -0.31
71 AT4G34120 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 2,
CYSTATHIONE [BETA]-SYNTHASE
DOMAIN-CONTAINING PROTEIN 1, LOSS
OF THE TIMING OF ET AND JA
BIOSYNTHESIS 1		 0.68 0.32 -0.3
72 AT1G03210 Phenazine biosynthesis PhzC/PhzF protein -0.67 0.3 -0.32
73 AT1G21740 Protein of unknown function (DUF630 and DUF632) -0.67 0.3 -0.32
74 AT4G28650 Leucine-rich repeat transmembrane protein kinase family
protein		 -0.66 0.31 -0.29
75 AT5G53090 NAD(P)-binding Rossmann-fold superfamily protein -0.65 0.31 -0.3
76 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.65 0.33 -0.31
77 AT4G03570 Cystatin/monellin superfamily protein -0.64 0.29 -0.3
78 AT1G59940 response regulator 3 response regulator 3 -0.64 0.31 -0.33
79 AT1G19710 UDP-Glycosyltransferase superfamily protein -0.64 0.33 -0.29
80 AT3G62760 Glutathione S-transferase family protein ATGSTF13 -0.64 0.32 -0.29
81 AT2G47680 zinc finger (CCCH type) helicase family protein -0.63 0.31 -0.33
82 AT1G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15620.1); Has 154 Blast hits
to 146 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.32
83 AT1G23210 glycosyl hydrolase 9B6 glycosyl hydrolase 9B6, glycosyl
hydrolase 9B6		 -0.63 0.3 -0.28
84 AT1G48670 auxin-responsive GH3 family protein -0.62 0.31 -0.32
85 AT5G53190 Nodulin MtN3 family protein AtSWEET3, SWEET3 -0.62 0.34 -0.31
86 AT1G13420 sulfotransferase 4B ARABIDOPSIS THALIANA
SULFOTRANSFERASE 4B,
sulfotransferase 4B		 -0.62 0.31 -0.34
87 AT3G14370 Protein kinase superfamily protein WAG2 -0.62 0.34 -0.3
88 AT4G27980 Domain of unknown function (DUF3444) -0.62 0.34 -0.31
89 AT1G33960 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 AVRRPT2-INDUCED GENE 1 -0.61 0.32 -0.3
90 AT2G39410 alpha/beta-Hydrolases superfamily protein -0.61 0.3 -0.33
91 AT5G55250 IAA carboxylmethyltransferase 1 AtIAMT1, IAA
carboxylmethyltransferase 1		 -0.61 0.32 -0.31
92 AT4G33790 Jojoba acyl CoA reductase-related male sterility protein ECERIFERUM 4, FATTY ACID REDUCTASE
3, G7		 -0.61 0.32 -0.31
93 AT1G57590 Pectinacetylesterase family protein -0.61 0.33 -0.31
94 AT1G08590 Leucine-rich receptor-like protein kinase family protein -0.61 0.31 -0.31
95 AT2G04500 Cysteine/Histidine-rich C1 domain family protein -0.6 0.31 -0.32
96 AT1G19600 pfkB-like carbohydrate kinase family protein -0.6 0.3 -0.32
97 AT3G42800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 853 Blast hits
to 340 proteins in 98 species: Archae - 0; Bacteria - 94;
Metazoa - 145; Fungi - 62; Plants - 95; Viruses - 0; Other
Eukaryotes - 457 (source: NCBI BLink).		 -0.6 0.33 -0.31
98 AT1G34750 Protein phosphatase 2C family protein -0.6 0.31 -0.31
99 AT2G25160 cytochrome P450, family 82, subfamily F, polypeptide 1 cytochrome P450, family 82,
subfamily F, polypeptide 1		 -0.59 0.29 -0.31
100 AT1G64450 Glycine-rich protein family -0.59 0.33 -0.31
101 AT3G50190 Plant protein of unknown function (DUF247) -0.58 0.29 -0.31
102 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.58 0.33 -0.32
103 AT5G62770 Protein of unknown function (DUF1645) -0.58 0.3 -0.32
104 AT5G61865 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.58 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
105 C0035 4-Methoxyindol-3-ylmethylglucosinolate - 4-Methoxy-3-indolylmethyl glucosinolate glucosinolate biosynthesis from tryptophan,
indole glucosinolate breakdown (active in intact plant cell) 		-0.69 0.42 -0.44 C0035