AT1G22960 : -
Query Information
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AGICode AT1G22960
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein 1 0.3 -0.31
2 AT1G43810 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.74 0.3 -0.31
3 AT3G22070 proline-rich family protein -0.73 0.31 -0.31
4 AT3G52900 Family of unknown function (DUF662) -0.72 0.31 -0.31
5 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.33 -0.31
6 AT1G74820 RmlC-like cupins superfamily protein 0.71 0.32 -0.34
7 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.31 -0.31
8 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.7 0.32 -0.31
9 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.7 0.31 -0.29
10 AT1G25460 NAD(P)-binding Rossmann-fold superfamily protein -0.7 0.31 -0.32
11 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).		 -0.7 0.3 -0.3
12 AT5G25160 zinc finger protein 3 zinc finger protein 3 0.7 0.31 -0.3
13 AT5G47520 RAB GTPase homolog A5A RAB GTPase homolog A5A, RAB GTPase
homolog A5A		 -0.7 0.33 -0.3
14 AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.3 -0.31
15 AT3G50890 homeobox protein 28 homeobox protein 28, homeobox
protein 28, ZINC FINGER
HOMEODOMAIN 7		 -0.69 0.3 -0.33
16 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.68 0.3 -0.3
17 AT2G23360 Plant protein of unknown function (DUF869) 0.68 0.3 -0.33
18 AT5G24130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.68 0.31 -0.33
19 AT5G51690 1-amino-cyclopropane-1-carboxylate synthase 12 1-amino-cyclopropane-1-carboxylate
synthase 12		 0.68 0.33 -0.3
20 AT2G45960 plasma membrane intrinsic protein 1B ATHH2, NAMED PLASMA MEMBRANE
INTRINSIC PROTEIN 1;2, plasma
membrane intrinsic protein 1B,
TRANSMEMBRANE PROTEIN A		 -0.67 0.34 -0.32
21 AT1G55700 Cysteine/Histidine-rich C1 domain family protein 0.67 0.32 -0.33
22 AT1G68940 Armadillo/beta-catenin-like repeat family protein 0.67 0.32 -0.28
23 AT2G10760 transposable element gene 0.66 0.33 -0.33
24 AT2G39060 Nodulin MtN3 family protein AtSWEET9, SWEET9 -0.66 0.33 -0.3
25 AT5G01280 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.66 0.32 -0.3
26 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO 0.65 0.31 -0.31
27 AT5G27050 AGAMOUS-like 101 AGAMOUS-like 101 0.65 0.32 -0.33
28 AT5G26210 alfin-like 4 alfin-like 4 -0.65 0.31 -0.33
29 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein -0.65 0.32 -0.32
30 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 0.65 0.31 -0.32
31 AT5G28410 unknown protein; Has 8 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.65 0.3 -0.33
32 AT5G08100 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 asparaginase A1 -0.65 0.33 -0.3
33 AT3G32080 transposable element gene 0.65 0.31 -0.3
34 AT5G45970 RAC-like 2 Arabidopsis RAC-like 2,
ARABIDOPSIS THALIANA RAC 2,
RHO-RELATED PROTEIN FROM PLANTS 7,
RAC-like 2, ROP7		 -0.65 0.31 -0.32
35 AT5G67290 FAD-dependent oxidoreductase family protein -0.64 0.32 -0.31
36 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding 0.64 0.32 -0.3
37 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 0.64 0.32 -0.32
38 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.64 0.31 -0.31
39 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.64 0.34 -0.3
40 AT3G09430 unknown protein; Has 17 Blast hits to 17 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.32 -0.33
41 AT4G15460 glycine-rich protein 0.64 0.31 -0.34
42 AT1G27900 RNA helicase family protein 0.64 0.32 -0.3
43 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 -0.63 0.32 -0.34
44 AT1G64790 ILITYHIA ILITYHIA 0.63 0.3 -0.3
45 AT2G40410 Staphylococcal nuclease homologue -0.63 0.32 -0.33
46 AT5G25990 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein
(TAIR:AT5G25970.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.63 0.31 -0.29
47 AT1G63590 Receptor-like protein kinase-related family protein -0.63 0.31 -0.34
48 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.63 0.34 -0.31
49 AT1G27600 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 Homolog,
IRREGULAR XYLEM 9-LIKE		 -0.63 0.34 -0.29
50 AT5G54530 Protein of unknown function, DUF538 -0.63 0.33 -0.31
51 AT5G26700 RmlC-like cupins superfamily protein 0.63 0.31 -0.32
52 AT3G13720 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F3, PRA8 -0.63 0.32 -0.3
53 AT5G03170 FASCICLIN-like arabinogalactan-protein 11 ARABIDOPSIS FASCICLIN-LIKE
ARABINOGALACTAN-PROTEIN 11,
FASCICLIN-like
arabinogalactan-protein 11		 -0.63 0.31 -0.31
54 AT1G79030 Chaperone DnaJ-domain superfamily protein 0.62 0.29 -0.32
55 AT4G27250 NAD(P)-binding Rossmann-fold superfamily protein 0.62 0.32 -0.31
56 AT2G14260 proline iminopeptidase proline iminopeptidase -0.62 0.3 -0.36
57 AT4G31900 chromatin remodeling factor, putative PICKLE RELATED 2 0.62 0.31 -0.29
58 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 -0.62 0.32 -0.31
59 AT3G26614 transposable element gene 0.62 0.33 -0.33
60 AT5G02560 histone H2A 12 histone H2A 12 -0.62 0.3 -0.32
61 AT5G49270 COBRA-like extracellular glycosyl-phosphatidyl
inositol-anchored protein family		 COBRA-LIKE 9, DEFORMED ROOT HAIRS
9, MUTANT ROOT HAIR 4, SHAVEN 2		 0.62 0.33 -0.33
62 AT5G15070 Phosphoglycerate mutase-like family protein 0.62 0.3 -0.29
63 AT5G57250 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.32 -0.31
64 AT3G49820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65925.1); Has 23 Blast hits
to 23 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.34 -0.3
65 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE		 -0.62 0.32 -0.3
66 AT5G12310 RING/U-box superfamily protein -0.62 0.33 -0.33
67 AT5G13280 aspartate kinase 1 ASPARTATE KINASE, aspartate kinase
1, ASPARTATE KINASE 1		 0.61 0.31 -0.29
68 AT5G47510 Sec14p-like phosphatidylinositol transfer family protein -0.61 0.32 -0.33
69 AT2G45610 alpha/beta-Hydrolases superfamily protein 0.61 0.35 -0.31
70 AT1G22050 membrane-anchored ubiquitin-fold protein 6 precursor membrane-anchored ubiquitin-fold
protein 6 precursor		 -0.61 0.29 -0.31
71 AT1G09020 homolog of yeast sucrose nonfermenting 4 ATSNF4, homolog of yeast sucrose
nonfermenting 4		 0.61 0.33 -0.3
72 AT5G24540 beta glucosidase 31 beta glucosidase 31 -0.61 0.3 -0.32
73 AT4G33800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.61 0.3 -0.32
74 AT5G42560 Abscisic acid-responsive (TB2/DP1, HVA22) family protein -0.61 0.29 -0.32
75 AT3G52220 CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain
(InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins
in 346 species: Archae - 10; Bacteria - 184; Metazoa -
3955; Fungi - 1221; Plants - 712; Viruses - 24; Other
Eukaryotes - 2776 (source: NCBI BLink).		 -0.6 0.29 -0.31
76 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.29 -0.31
77 AT4G13230 Late embryogenesis abundant protein (LEA) family protein -0.6 0.34 -0.34
78 AT4G33580 beta carbonic anhydrase 5 A. THALIANA BETA CARBONIC
ANHYDRASE 5, beta carbonic
anhydrase 5		 -0.6 0.32 -0.34
79 AT1G33612 Leucine-rich repeat (LRR) family protein 0.6 0.32 -0.31
80 AT1G31380 TRAF-like family protein -0.6 0.32 -0.32
81 AT4G36620 GATA transcription factor 19 GATA transcription factor 19,
hanaba taranu like 2		 0.6 0.32 -0.32
82 AT1G31290 ARGONAUTE 3 ARGONAUTE 3 0.6 0.32 -0.3
83 AT1G68270 AMP-dependent synthetase and ligase family protein 0.6 0.32 -0.29
84 AT5G57200 ENTH/ANTH/VHS superfamily protein 0.6 0.28 -0.32
85 AT2G02640 Cysteine/Histidine-rich C1 domain family protein -0.6 0.33 -0.31
86 AT2G33530 serine carboxypeptidase-like 46 serine carboxypeptidase-like 46 -0.6 0.32 -0.3
87 AT4G27400 Late embryogenesis abundant (LEA) protein-related 0.6 0.31 -0.32
88 AT2G22100 RNA-binding (RRM/RBD/RNP motifs) family protein 0.6 0.33 -0.29
89 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.6 0.34 -0.32
90 AT1G79870 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 -0.59 0.3 -0.35
91 AT5G26140 Putative lysine decarboxylase family protein ATLOG9, LONELY GUY 9 -0.59 0.31 -0.32
92 AT1G06760 winged-helix DNA-binding transcription factor family
protein		 -0.59 0.32 -0.3
93 AT3G24750 unknown protein; Has 25 Blast hits to 25 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.32 -0.32
94 AT3G01510 like SEX4 1 like SEX4 1 -0.59 0.3 -0.31
95 AT2G42800 receptor like protein 29 receptor like protein 29, receptor
like protein 29		 -0.59 0.32 -0.32
96 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.59 0.32 -0.29
97 AT1G80970 XH domain-containing protein -0.59 0.35 -0.33
98 AT3G09980 Family of unknown function (DUF662) -0.58 0.29 -0.34
99 AT5G63980 Inositol monophosphatase family protein ALTERED EXPRESSION OF APX2 8,
ATSAL1, FIERY1, HIGH EXPRESSION OF
OSMOTICALLY RESPONSIVE GENES 2,
ROTUNDA 1, SAL1, suppressors of
PIN1 overexpression 1		 -0.58 0.3 -0.31
100 AT5G59050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.58 0.3 -0.32
101 AT1G33475 SNARE-like superfamily protein -0.58 0.3 -0.31
102 AT2G03500 Homeodomain-like superfamily protein -0.58 0.32 -0.32
103 AT1G26860 transposable element gene -0.58 0.31 -0.3
104 AT4G10280 RmlC-like cupins superfamily protein -0.58 0.31 -0.31
105 AT3G11945 homogentisate prenyltransferase homogentisate prenyltransferase,
homogentisate prenyltransferase,
PHYTOENE DESATURATION 2		 -0.58 0.3 -0.31
106 AT4G25510 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.33 -0.33
107 AT5G06610 Protein of unknown function (DUF620) -0.57 0.33 -0.3
108 AT1G26290 unknown protein; Has 126 Blast hits to 112 proteins in 36
species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 3;
Plants - 14; Viruses - 0; Other Eukaryotes - 89 (source:
NCBI BLink).		 -0.57 0.32 -0.3
109 AT1G21510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cotyledon; Has
380 Blast hits to 286 proteins in 63 species: Archae - 0;
Bacteria - 6; Metazoa - 254; Fungi - 44; Plants - 13;
Viruses - 5; Other Eukaryotes - 58 (source: NCBI BLink).		 -0.57 0.34 -0.31
110 AT5G10770 Eukaryotic aspartyl protease family protein -0.57 0.32 -0.33
111 AT2G40880 cystatin A cystatin A, cystatin A, FL3-27 -0.57 0.3 -0.3
112 AT1G66460 Protein kinase superfamily protein -0.57 0.29 -0.32
113 AT3G17120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02380.1); Has 67 Blast hits
to 67 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.31 -0.32
114 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 -0.57 0.33 -0.29
115 AT3G58350 RESTRICTED TEV MOVEMENT 3 RESTRICTED TEV MOVEMENT 3 -0.56 0.32 -0.29
116 AT3G56260 unknown protein; Has 20 Blast hits to 19 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2;
Plants - 10; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.56 0.31 -0.33
117 AT3G43060 transposable element gene -0.56 0.3 -0.3
118 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.56 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0173 MST_2301.7 - - - 0.74 0.44 -0.43
120 C0188 Nicotine (-)-Nicotine Nicotine - 0.73 0.47 -0.43 C0188
121 C0223 Quercetin-3-O-β-glucopyranoside-7-O-α-rhamnospyranoide - Quercetin-3-O-glucoside-7-O-rhamnoside quercetin glucoside biosynthesis (Arabidopsis) 0.64 0.32 -0.3 C0223