AT2G17870 : ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3
Query Information
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AGICode AT2G17870
Description cold shock domain protein 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G17870 cold shock domain protein 3 ARABIDOPSIS COLD SHOCK DOMAIN
PROTEIN 3, cold shock domain
protein 3		 1 0.32 -0.3
2 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.71 0.34 -0.32
3 AT5G57670 Protein kinase superfamily protein -0.71 0.32 -0.32
4 AT1G02090 Proteasome component (PCI) domain protein ARABIDOPSIS THALIANA COP9
SIGNALOSOME SUBUNIT 7,
CONSTITUTIVE PHOTOMORPHOGENIC 15,
COP9 SIGNALOSOME SUBUNIT 7, FUSCA
5		 0.67 0.32 -0.33
5 AT4G14900 FRIGIDA-like protein 0.64 0.31 -0.31
6 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 0.63 0.3 -0.3
7 AT1G43650 nodulin MtN21 /EamA-like transporter family protein -0.63 0.32 -0.33
8 AT2G16940 Splicing factor, CC1-like 0.62 0.33 -0.3
9 AT2G31370 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.62 0.32 -0.3
10 AT3G60830 actin-related protein 7 ARP7, actin-related protein 7,
actin-related protein 7		 0.62 0.34 -0.31
11 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.61 0.33 -0.3
12 AT1G32310 unknown protein; Has 28 Blast hits to 28 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.31
13 AT3G12510 MADS-box family protein 0.61 0.33 -0.32
14 AT1G51450 TRAUCO ARABIDOPSIS Ash2 RELATIVE, TRAUCO 0.61 0.33 -0.33
15 AT5G62160 zinc transporter 12 precursor zinc transporter 12 precursor,
zinc transporter 12 precursor		 -0.6 0.31 -0.33
16 AT2G27100 C2H2 zinc-finger protein SERRATE (SE) SERRATE 0.6 0.32 -0.32
17 AT1G12830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 39778
Blast hits to 22088 proteins in 1060 species: Archae - 152;
Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants -
2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink).		 0.6 0.32 -0.31
18 AT2G23570 methyl esterase 19 ARABIDOPSIS THALIANA METHYL
ESTERASE 19, methyl esterase 19		 -0.59 0.3 -0.31
19 AT1G66530 Arginyl-tRNA synthetase, class Ic 0.59 0.33 -0.3
20 AT5G11910 alpha/beta-Hydrolases superfamily protein -0.59 0.32 -0.33
21 AT5G46070 Guanylate-binding family protein 0.59 0.31 -0.31
22 AT5G51300 splicing factor-related 0.59 0.31 -0.3
23 AT5G14380 arabinogalactan protein 6 arabinogalactan protein 6 -0.59 0.35 -0.33
24 AT3G05850 transposable element gene 0.58 0.32 -0.32
25 AT2G47330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.57 0.29 -0.31
26 AT1G80020 transposable element gene 0.57 0.32 -0.32
27 AT1G10000 Ribonuclease H-like superfamily protein -0.56 0.33 -0.3
28 AT2G32000 DNA topoisomerase, type IA, core -0.56 0.34 -0.31
29 AT3G12730 Homeodomain-like superfamily protein -0.55 0.3 -0.33
30 AT2G18510 RNA-binding (RRM/RBD/RNP motifs) family protein embryo defective 2444 0.55 0.3 -0.33
31 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein 0.55 0.31 -0.32
32 AT1G21850 SKU5 similar 8 SKU5 similar 8 -0.54 0.33 -0.35
33 AT5G58470 TBP-associated factor 15B TBP-associated factor 15B 0.54 0.31 -0.33
34 AT2G34540 unknown protein; Has 19 Blast hits to 19 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.54 0.29 -0.32
35 AT1G16590 DNA-binding HORMA family protein ATREV7, REV7 -0.53 0.31 -0.31
36 AT1G57550 Low temperature and salt responsive protein family -0.53 0.34 -0.31
37 AT4G12990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plant-type cell wall; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.53 0.31 -0.32
38 AT5G40260 Nodulin MtN3 family protein AtSWEET8, SWEET8 -0.52 0.34 -0.32
39 AT2G26460 RED family protein SUPPRESSORS OF MEC-8 AND UNC-52 2 0.52 0.31 -0.32
40 AT3G58890 RNI-like superfamily protein -0.51 0.31 -0.32
41 AT3G13420 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G55535.1); Has 66 Blast hits
to 66 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.51 0.31 -0.32
42 AT4G13190 Protein kinase superfamily protein 0.51 0.31 -0.31
43 AT4G26390 Pyruvate kinase family protein -0.51 0.31 -0.32
44 AT2G24220 purine permease 5 purine permease 5, purine permease
5		 -0.51 0.29 -0.3
45 AT5G03270 lysine decarboxylase family protein LONELY GUY 6 -0.49 0.31 -0.32
46 AT4G15040 Subtilisin-like serine endopeptidase family protein -0.48 0.31 -0.29
47 AT1G23700 Protein kinase superfamily protein -0.48 0.32 -0.31
48 AT2G23830 PapD-like superfamily protein -0.48 0.3 -0.3
49 AT2G40030 nuclear RNA polymerase D1B ATNRPD1B, DEFECTIVE IN MERISTEM
SILENCING 5, DRD3, nuclear RNA
polymerase D1B, NRPE1		 -0.48 0.32 -0.32
50 AT1G53770 O-fucosyltransferase family protein -0.48 0.31 -0.31
51 AT5G11180 glutamate receptor 2.6 ARABIDOPSIS THALIANA GLUTAMATE
RECEPTOR 2.6, glutamate receptor
2.6		 -0.48 0.33 -0.31
52 AT3G16130 RHO guanyl-nucleotide exchange factor 13 ATROPGEF13, phytochrome
interacting RopGEF 2, RHO
guanyl-nucleotide exchange factor
13		 -0.47 0.32 -0.31
53 AT5G46850 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.46 0.3 -0.31
54 AT1G35617 unknown protein; Has 262 Blast hits to 207 proteins in 54
species: Archae - 0; Bacteria - 28; Metazoa - 70; Fungi -
8; Plants - 93; Viruses - 20; Other Eukaryotes - 43
(source: NCBI BLink).		 -0.46 0.32 -0.33
55 AT5G19880 Peroxidase superfamily protein -0.46 0.33 -0.31
56 AT3G01020 ISCU-like 2 ISCU-LIKE 2, ISCU-like 2 -0.46 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
57 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - -0.7 0.44 -0.42
58 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		-0.51 0.31 -0.32 C0101