AT1G08610 : -
Query Information
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AGICode AT1G08610
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G08610 Pentatricopeptide repeat (PPR) superfamily protein 1 0.32 -0.31
2 AT2G25970 KH domain-containing protein 0.86 0.33 -0.31
3 AT1G09620 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 0.86 0.33 -0.31
4 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.84 0.33 -0.3
5 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.84 0.3 -0.3
6 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.82 0.29 -0.29
7 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 0.81 0.34 -0.33
8 AT5G51120 polyadenylate-binding protein 1 POLYADENYLATE-BINDING PROTEIN 1,
polyadenylate-binding protein 1		 0.81 0.33 -0.33
9 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.8 0.31 -0.32
10 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.8 0.31 -0.32
11 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase		 0.79 0.31 -0.31
12 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G2		 0.79 0.35 -0.31
13 AT1G50920 Nucleolar GTP-binding protein 0.79 0.33 -0.3
14 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B		 0.79 0.33 -0.32
15 AT1G11320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 7 plant structures;
EXPRESSED DURING: C globular stage, F mature embryo stage,
petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; Has 46 Blast hits to 46
proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.79 0.32 -0.31
16 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 0.78 0.31 -0.32
17 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.78 0.31 -0.29
18 AT4G17840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Abortive infection protein (InterPro:IPR003675); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.77 0.33 -0.3
19 AT2G37310 Pentatricopeptide repeat (PPR) superfamily protein 0.77 0.32 -0.31
20 AT1G48570 zinc finger (Ran-binding) family protein 0.77 0.33 -0.32
21 AT1G22730 MA3 domain-containing protein 0.77 0.31 -0.31
22 AT1G31970 DEA(D/H)-box RNA helicase family protein STRESS RESPONSE SUPPRESSOR 1 0.77 0.33 -0.32
23 AT5G52470 fibrillarin 1 ATFBR1, ATFIB1, FIBRILLARIN 1,
fibrillarin 1,
SKP1/ASK1-INTERACTING PROTEIN		 0.77 0.32 -0.29
24 AT5G12200 pyrimidine 2 pyrimidine 2 -0.76 0.31 -0.29
25 AT1G03830 guanylate-binding family protein 0.76 0.29 -0.33
26 AT2G37400 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.32 -0.32
27 AT2G34357 ARM repeat superfamily protein 0.76 0.3 -0.32
28 AT2G17360 Ribosomal protein S4 (RPS4A) family protein 0.76 0.32 -0.31
29 AT5G46920 Intron maturase, type II family protein 0.76 0.3 -0.3
30 AT1G49760 poly(A) binding protein 8 poly(A) binding protein 8, POLY(A)
BINDING PROTEIN 8		 0.76 0.34 -0.3
31 AT3G27110 Peptidase family M48 family protein -0.76 0.31 -0.32
32 AT3G12520 sulfate transporter 4;2 sulfate transporter 4;2 -0.75 0.31 -0.29
33 AT4G19610 nucleotide binding;nucleic acid binding;RNA binding 0.75 0.31 -0.33
34 AT1G28060 Pre-mRNA-splicing factor 3 0.75 0.32 -0.31
35 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.75 0.34 -0.3
36 AT3G20440 Alpha amylase family protein BRANCHING ENZYME 1, EMBRYO
DEFECTIVE 2729		 0.75 0.29 -0.31
37 AT1G69950 transposable element gene 0.75 0.3 -0.31
38 AT2G21790 ribonucleotide reductase 1 RIBONUCLEOTIDE REDUCTASE LARGE
SUBUNIT 1, CRINKLY LEAVES 8,
RIBONUCLEOTIDE REDUCTASE 1,
ribonucleotide reductase 1		 0.75 0.29 -0.31
39 AT3G26370 O-fucosyltransferase family protein 0.74 0.32 -0.31
40 AT2G38770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 EMBRYO DEFECTIVE 2765 0.74 0.33 -0.31
41 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159		 ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86		 0.74 0.29 -0.32
42 AT1G72550 tRNA synthetase beta subunit family protein 0.74 0.3 -0.33
43 AT1G58180 beta carbonic anhydrase 6 A. THALIANA BETA CARBONIC
ANHYDRASE 6, beta carbonic
anhydrase 6		 -0.74 0.32 -0.31
44 AT3G04550 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in
51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.73 0.32 -0.33
45 AT1G12200 Flavin-binding monooxygenase family protein flavin monooxygenase -0.73 0.3 -0.33
46 AT3G14900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: embryo development; LOCATED IN: chloroplast;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13
growth stages; Has 17135 Blast hits to 10204 proteins in
644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536;
Fungi - 2506; Plants - 1043; Viruses - 361; Other
Eukaryotes - 5958 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3120 0.73 0.3 -0.31
47 AT3G02760 Class II aaRS and biotin synthetases superfamily protein 0.72 0.3 -0.32
48 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.72 0.32 -0.31
49 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.72 0.31 -0.3
50 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.72 0.32 -0.31
51 AT5G40670 PQ-loop repeat family protein / transmembrane family
protein		 -0.72 0.29 -0.35
52 AT5G63080 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.31 -0.33
53 AT2G01860 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 975 0.72 0.31 -0.32
54 AT3G49580 response to low sulfur 1 RESPONSE TO LOW SULFUR 1 -0.71 0.33 -0.29
55 AT1G16730 unknown protein 6 unknown protein 6 -0.71 0.31 -0.31
56 AT1G75280 NmrA-like negative transcriptional regulator family protein -0.7 0.32 -0.32
57 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.68 0.33 -0.32
58 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.68 0.32 -0.31
59 AT4G04320 malonyl-CoA decarboxylase family protein -0.68 0.33 -0.31
60 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.68 0.33 -0.31
61 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.68 0.34 -0.31
62 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.68 0.32 -0.33
63 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 -0.68 0.3 -0.33
64 AT2G38740 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.68 0.32 -0.32
65 AT4G17370 Oxidoreductase family protein -0.67 0.31 -0.32
66 AT5G24655 response to low sulfur 4 RESPONSE TO LOW SULFUR 4 -0.67 0.33 -0.31
67 AT4G01070 UDP-Glycosyltransferase superfamily protein GT72B1, UDP-GLUCOSE-DEPENDENT
GLUCOSYLTRANSFERASE 72 B1		 -0.67 0.32 -0.31
68 AT4G34630 unknown protein; Has 30 Blast hits to 30 proteins in 10
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.67 0.35 -0.32
69 AT1G70790 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.67 0.29 -0.32
70 AT1G71480 Nuclear transport factor 2 (NTF2) family protein -0.67 0.31 -0.32
71 AT1G52880 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 18, ATNAM, NO APICAL
MERISTEM, NAC-REGULATED SEED
MORPHOLOGY 2		 -0.67 0.29 -0.32
72 AT3G59660 C2 domain-containing protein / GRAM domain-containing
protein		 -0.67 0.32 -0.31
73 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.66 0.31 -0.34
74 AT1G50020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
Has 72 Blast hits to 72 proteins in 27 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.28 -0.34
75 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.65 0.31 -0.3
76 AT4G24400 CBL-interacting protein kinase 8 ATCIPK8, CBL-interacting protein
kinase 8, PROTEIN KINASE 11,
SNF1-RELATED PROTEIN KINASE 3.13		 -0.65 0.32 -0.32
77 AT1G78200 Protein phosphatase 2C family protein -0.64 0.31 -0.33
78 AT1G02120 GRAM domain family protein VASCULAR ASSOCIATED DEATH1 -0.64 0.31 -0.32
79 AT3G12350 F-box family protein -0.63 0.3 -0.31
80 AT3G16990 Haem oxygenase-like, multi-helical -0.62 0.32 -0.31
81 AT2G32080 purin-rich alpha 1 purin-rich alpha 1 -0.62 0.33 -0.32
82 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.62 0.29 -0.33
83 AT5G11910 alpha/beta-Hydrolases superfamily protein -0.62 0.33 -0.3
84 AT4G14020 Rapid alkalinization factor (RALF) family protein -0.62 0.31 -0.3
85 AT2G44460 beta glucosidase 28 beta glucosidase 28 -0.62 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
86 C0079 Digalactosyldiacylglycerol-34:5 - Digalactosyldiacylglycerol-34:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.77 0.43 -0.46 C0079
87 C0080 Digalactosyldiacylglycerol-34:6 - Digalactosyldiacylglycerol-34:6 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.76 0.44 -0.43 C0080
88 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine 0.72 0.46 -0.43 C0031
89 C0118 Hyperoside - Quercetin-3-glucoside quercetin glucoside biosynthesis (Arabidopsis),
rutin biosynthesis 		0.72 0.43 -0.42 C0118