AT1G03540 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT1G03540
Description Pentatricopeptide repeat (PPR-like) superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G03540 Pentatricopeptide repeat (PPR-like) superfamily protein 1 0.29 -0.32
2 AT1G69310 WRKY DNA-binding protein 57 ATWRKY57, WRKY DNA-binding protein
57		 -0.74 0.3 -0.32
3 AT2G20100 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.71 0.32 -0.33
4 AT4G20110 VACUOLAR SORTING RECEPTOR 7 binding protein of 80 kDa 3;1,
VACUOLAR SORTING RECEPTOR 3;1,
VACUOLAR SORTING RECEPTOR 7		 -0.68 0.33 -0.34
5 AT2G25760 Protein kinase family protein -0.67 0.3 -0.3
6 AT5G24030 SLAC1 homologue 3 SLAC1 homologue 3 -0.64 0.33 -0.31
7 AT2G36760 UDP-glucosyl transferase 73C2 UDP-glucosyl transferase 73C2 -0.64 0.31 -0.32
8 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 -0.64 0.31 -0.3
9 AT3G46270 receptor protein kinase-related 0.63 0.35 -0.34
10 AT5G03620 Subtilisin-like serine endopeptidase family protein 0.63 0.3 -0.3
11 AT5G09400 K+ uptake permease 7 K+ uptake permease 7 -0.63 0.32 -0.3
12 AT2G07505 zinc ion binding 0.63 0.31 -0.31
13 AT5G41330 BTB/POZ domain with WD40/YVTN repeat-like protein -0.62 0.3 -0.31
14 AT1G42460 transposable element gene -0.62 0.3 -0.29
15 AT1G02740 MRG family protein 0.61 0.32 -0.32
16 AT4G11050 glycosyl hydrolase 9C3 glycosyl hydrolase 9C3, glycosyl
hydrolase 9C3		 0.61 0.3 -0.3
17 AT4G36460 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.32 -0.34
18 AT2G24840 AGAMOUS-like 61 AGAMOUS-like 61, DIANA 0.6 0.3 -0.31
19 AT2G18970 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.32 -0.31
20 AT3G61260 Remorin family protein 0.6 0.32 -0.31
21 AT1G69160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits
to 172 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other
Eukaryotes - 29 (source: NCBI BLink).		 0.6 0.33 -0.33
22 AT5G06650 C2H2 and C2HC zinc fingers superfamily protein GLABROUS INFLORESCENCE STEMS 2 0.59 0.32 -0.32
23 AT4G08030 transposable element gene 0.59 0.32 -0.33
24 AT3G46070 C2H2-type zinc finger family protein -0.59 0.32 -0.3
25 AT2G25000 WRKY DNA-binding protein 60 ATWRKY60, WRKY DNA-binding protein
60		 -0.59 0.31 -0.3
26 AT1G07610 metallothionein 1C metallothionein 1C -0.58 0.32 -0.33
27 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 -0.58 0.35 -0.29
28 AT5G26210 alfin-like 4 alfin-like 4 0.57 0.32 -0.35
29 AT4G16447 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.57 0.33 -0.32
30 AT5G06510 nuclear factor Y, subunit A10 nuclear factor Y, subunit A10 -0.57 0.3 -0.3
31 AT1G10380 Putative membrane lipoprotein 0.57 0.31 -0.31
32 AT1G33460 transposable element gene 0.57 0.32 -0.33
33 AT1G67340 HCP-like superfamily protein with MYND-type zinc finger 0.57 0.31 -0.31
34 AT5G16210 HEAT repeat-containing protein -0.57 0.32 -0.3
35 AT5G67190 DREB and EAR motif protein 2 DREB and EAR motif protein 2 0.56 0.33 -0.32
36 AT2G19630 F-box and associated interaction domains-containing protein -0.56 0.3 -0.31
37 AT2G44430 DNA-binding bromodomain-containing protein -0.56 0.33 -0.3
38 AT3G17330 evolutionarily conserved C-terminal region 6 evolutionarily conserved
C-terminal region 6		 0.56 0.3 -0.32
39 AT3G45630 RNA binding (RRM/RBD/RNP motifs) family protein -0.56 0.33 -0.33
40 AT1G07160 Protein phosphatase 2C family protein -0.56 0.3 -0.3
41 AT4G22650 CONTAINS InterPro DOMAIN/s: Plant lipid transfer
protein/seed storage/trypsin-alpha amylase inhibitor
(InterPro:IPR003612); BEST Arabidopsis thaliana protein
match is: Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
(TAIR:AT4G22640.1); Has 25 Blast hits to 25 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.33 -0.33
42 AT1G33540 serine carboxypeptidase-like 18 serine carboxypeptidase-like 18 0.55 0.31 -0.33
43 AT5G15725 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.55 0.32 -0.3
44 AT2G34670 Protein of unknown function (DUF630 and DUF632) 0.55 0.33 -0.32
45 AT1G47980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169
proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa
- 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink).		 -0.55 0.31 -0.33
46 AT5G47310 PPPDE putative thiol peptidase family protein 0.55 0.32 -0.3
47 AT4G38670 Pathogenesis-related thaumatin superfamily protein 0.55 0.3 -0.32
48 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 -0.55 0.29 -0.31
49 AT1G70470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23530.1); Has 64 Blast hits
to 64 proteins in 22 species: Archae - 0; Bacteria - 2;
Metazoa - 7; Fungi - 10; Plants - 43; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.55 0.28 -0.32
50 AT4G31000 Calmodulin-binding protein -0.55 0.33 -0.32
51 AT1G10880 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.55 0.32 -0.32
52 AT3G14640 cytochrome P450, family 72, subfamily A, polypeptide 10 cytochrome P450, family 72,
subfamily A, polypeptide 10		 -0.54 0.31 -0.32
53 AT5G07570 glycine/proline-rich protein 0.54 0.3 -0.33
54 AT2G43280 Far-red impaired responsive (FAR1) family protein 0.54 0.31 -0.32
55 AT4G14290 alpha/beta-Hydrolases superfamily protein 0.54 0.31 -0.33
56 AT4G39410 WRKY DNA-binding protein 13 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 13, WRKY
DNA-binding protein 13		 0.54 0.31 -0.34
57 AT5G44060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.54 0.29 -0.3
58 AT4G35740 DEAD/DEAH box RNA helicase family protein A. THALIANA RECQ HELICASE 3,
RecQl3		 0.54 0.3 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
59 C0171 MST_2182.9 - - - 0.83 0.45 -0.46
60 C0242 Suberic acid - - - 0.65 0.44 -0.48
61 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.54 0.29 -0.32 C0140