AT1G24190 : ARABIDOPSIS THALIANA SIN3 HOMOLOG
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT1G24190
Description SIN3-like 3
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 1 0.32 -0.3
2 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.81 0.34 -0.32
3 AT3G63180 TIC-like TICKLE, TIC-like 0.79 0.32 -0.32
4 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.77 0.3 -0.3
5 AT4G32850 nuclear poly(a) polymerase nuclear poly(a) polymerase,
poly(A) polymerase IV		 0.77 0.29 -0.32
6 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.76 0.31 -0.3
7 AT5G19310 Homeotic gene regulator 0.76 0.32 -0.3
8 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 0.75 0.3 -0.34
9 AT1G07410 RAB GTPase homolog A2B ARABIDOPSIS RAB GTPASE HOMOLOG
A2B, RAB GTPase homolog A2B, RAB
GTPASE HOMOLOG A2B, RAB GTPase
homolog A2B		 -0.72 0.31 -0.33
10 AT5G22850 Eukaryotic aspartyl protease family protein 0.72 0.32 -0.31
11 AT3G10730 SAD1/UNC-84 domain protein 2 ARABIDOPSIS SAD1/UNC-84 DOMAIN
PROTEIN 2, SAD1/UNC-84 domain
protein 2		 -0.71 0.32 -0.32
12 AT1G79830 golgin candidate 5 golgin candidate 5 0.71 0.3 -0.3
13 AT4G37460 Tetratricopeptide repeat (TPR)-like superfamily protein SUPPRESSOR OF RPS4-RLD 1 0.71 0.29 -0.35
14 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.7 0.3 -0.29
15 AT3G19450 GroES-like zinc-binding alcohol dehydrogenase family
protein		 ATCAD4, CAD, CAD-C, CINNAMYL
ALCOHOL DEHYDROGENASE 4		 -0.7 0.33 -0.31
16 AT3G61710 AUTOPHAGY 6 ATATG6, AtBECLIN1, AUTOPHAGY 6,
BECLIN1		 0.7 0.31 -0.34
17 AT2G25490 EIN3-binding F box protein 1 EIN3-binding F box protein 1, FBL6 0.7 0.31 -0.31
18 AT5G16210 HEAT repeat-containing protein 0.7 0.27 -0.31
19 AT1G76460 RNA-binding (RRM/RBD/RNP motifs) family protein 0.69 0.31 -0.31
20 AT5G56290 peroxin 5 ARABIDOPSIS PEROXIN 5, EMBRYO
DEFECTIVE 2790, peroxin 5		 0.69 0.32 -0.31
21 AT5G18230 transcription regulator NOT2/NOT3/NOT5 family protein 0.69 0.32 -0.33
22 AT4G23980 auxin response factor 9 auxin response factor 9 0.69 0.32 -0.31
23 AT1G55250 histone mono-ubiquitination 2 histone mono-ubiquitination 2 0.69 0.31 -0.31
24 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B 0.69 0.32 -0.32
25 AT1G17680 tetratricopeptide repeat (TPR)-containing protein 0.69 0.32 -0.32
26 AT3G09920 phosphatidyl inositol monophosphate 5 kinase phosphatidyl inositol
monophosphate 5 kinase		 0.69 0.32 -0.33
27 AT4G18130 phytochrome E phytochrome E 0.68 0.33 -0.33
28 AT1G77750 Ribosomal protein S13/S18 family -0.68 0.29 -0.31
29 AT4G00550 digalactosyl diacylglycerol deficient 2 digalactosyl diacylglycerol
deficient 2		 0.67 0.32 -0.32
30 AT4G32760 ENTH/VHS/GAT family protein 0.67 0.31 -0.3
31 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 0.67 0.3 -0.33
32 AT1G34350 unknown protein; Has 192 Blast hits to 192 proteins in 79
species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi -
0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source:
NCBI BLink).		 -0.67 0.33 -0.34
33 AT1G05350 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.34 -0.31
34 AT3G59480 pfkB-like carbohydrate kinase family protein -0.67 0.33 -0.33
35 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.67 0.31 -0.34
36 AT5G65620 Zincin-like metalloproteases family protein 0.67 0.35 -0.29
37 AT1G17440 Transcription initiation factor TFIID subunit A CYTOKININ-HYPERSENSITIVE 1,
ENHANCED ETHYLENE RESPONSE 4,
TBP-ASSOCIATED FACTOR 12B		 0.67 0.3 -0.31
38 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 0.67 0.32 -0.31
39 AT1G13380 Protein of unknown function (DUF1218) -0.67 0.31 -0.32
40 AT1G02080 transcription regulators 0.67 0.35 -0.32
41 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.66 0.33 -0.31
42 ATMG00400 hypothetical protein ORF157 0.66 0.3 -0.33
43 AT1G30490 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 ATHB9, PHAVOLUTA 0.66 0.32 -0.32
44 AT3G56140 Protein of unknown function (DUF399 and DUF3411) 0.66 0.31 -0.32
45 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.66 0.32 -0.34
46 AT4G12490 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.66 0.34 -0.32
47 AT3G61600 POZ/BTB containin G-protein 1 POZ/BTB containin G-protein 1,
POZ/BTB containin G-protein 1		 0.66 0.31 -0.33
48 AT4G32730 Homeodomain-like protein ATMYB3R-1, ARABIDOOSIS THALIANA
MYB DOMAIN PROTEIN 3R1, MYB DOMAIN
PROTEIN 3R1, C-MYB-LIKE
TRANSCRIPTION FACTOR 3R-1, PC-MYB1		 0.66 0.31 -0.34
49 AT3G12370 Ribosomal protein L10 family protein -0.66 0.3 -0.32
50 AT3G27670 ARM repeat superfamily protein RESURRECTION1 0.65 0.34 -0.31
51 AT5G03970 F-box associated ubiquitination effector family protein -0.65 0.32 -0.32
52 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 0.65 0.3 -0.31
53 AT5G41600 VIRB2-interacting protein 3 VIRB2-interacting protein 3,
Reticulan like protein B4		 -0.65 0.32 -0.31
54 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 0.65 0.3 -0.34
55 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.65 0.32 -0.3
56 AT2G39340 SAC3/GANP/Nin1/mts3/eIF-3 p25 family AtSAC3A, yeast Sac3 homolog A 0.65 0.31 -0.31
57 AT1G10590 Nucleic acid-binding, OB-fold-like protein -0.65 0.3 -0.32
58 AT3G62840 Small nuclear ribonucleoprotein family protein -0.65 0.3 -0.32
59 AT1G22270 Trm112p-like protein -0.65 0.3 -0.31
60 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.64 0.3 -0.31
61 AT3G53090 ubiquitin-protein ligase 7 ubiquitin-protein ligase 7 0.64 0.33 -0.32
62 AT3G57300 INO80 ortholog INO80 ORTHOLOG, INO80 ortholog 0.64 0.33 -0.29
63 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 0.64 0.3 -0.32
64 AT2G17110 Protein of unknown function (DUF630 and DUF632) 0.64 0.31 -0.32
65 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.64 0.32 -0.33
66 AT1G52550 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G15780.1); Has 53 Blast
hits to 51 proteins in 18 species: Archae - 0; Bacteria -
8; Metazoa - 4; Fungi - 0; Plants - 23; Viruses - 8; Other
Eukaryotes - 10 (source: NCBI BLink).		 0.64 0.32 -0.31
67 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 0.64 0.35 -0.34
68 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 -0.64 0.31 -0.32
69 AT5G15240 Transmembrane amino acid transporter family protein 0.64 0.32 -0.29
70 AT1G24330 ARM repeat superfamily protein 0.64 0.3 -0.3
71 AT2G15530 RING/U-box superfamily protein 0.64 0.29 -0.31
72 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.64 0.31 -0.31
73 AT4G13020 Protein kinase superfamily protein MHK 0.64 0.32 -0.33
74 AT3G02850 STELAR K+ outward rectifier STELAR K+ outward rectifier -0.63 0.32 -0.31
75 AT5G64060 NAC domain containing protein 103 NAC domain containing protein 103,
NAC domain containing protein 103		 -0.63 0.32 -0.33
76 AT3G44780 Cysteine proteinases superfamily protein -0.63 0.31 -0.3
77 AT1G77800 PHD finger family protein 0.63 0.32 -0.32
78 AT5G53740 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G53905.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.32 -0.32
79 AT1G59640 BIG PETAL P BIG PETAL, BIG PETAL P, BIG PETAL
UB, ZCW32		 0.63 0.29 -0.34
80 AT3G43220 Phosphoinositide phosphatase family protein 0.63 0.34 -0.32
81 AT1G45160 Protein kinase superfamily protein 0.63 0.33 -0.31
82 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 0.63 0.33 -0.33
83 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.63 0.31 -0.32
84 AT3G14570 glucan synthase-like 4 glucan synthase-like 4, atgsl4,
gsl04, glucan synthase-like 4		 0.63 0.32 -0.34
85 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 0.63 0.32 -0.31
86 AT1G15060 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 0.62 0.33 -0.3
87 AT5G27970 ARM repeat superfamily protein 0.62 0.31 -0.32
88 AT1G80460 Actin-like ATPase superfamily protein GLI1, nonhost resistance to P. s.
phaseolicola 1		 -0.62 0.28 -0.31
89 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 0.62 0.32 -0.31
90 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.62 0.32 -0.32
91 AT1G60490 vacuolar protein sorting 34 ATVPS34, PHOSPATIDYLINOSITOL
3-KINASE, vacuolar protein sorting
34		 0.62 0.3 -0.32
92 AT2G25760 Protein kinase family protein 0.62 0.32 -0.32
93 AT2G41810 Protein of unknown function, DUF642 -0.62 0.32 -0.32
94 AT1G13540 Protein of unknown function (DUF1262) -0.62 0.29 -0.3
95 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.62 0.29 -0.32
96 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 0.62 0.34 -0.29
97 AT3G22430 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS
(InterPro:IPR005380); BEST Arabidopsis thaliana protein
match is: XS domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1); Has
565 Blast hits to 510 proteins in 121 species: Archae - 2;
Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51;
Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).		 0.61 0.32 -0.32
98 AT1G12470 zinc ion binding 0.61 0.33 -0.32
99 AT5G13020 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML3, EMSY-like 3 0.61 0.34 -0.29
100 AT5G15725 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.61 0.31 -0.32
101 AT1G54260 winged-helix DNA-binding transcription factor family
protein		 0.61 0.31 -0.3
102 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 -0.61 0.33 -0.31
103 AT3G10700 galacturonic acid kinase galacturonic acid kinase -0.61 0.28 -0.32
104 AT1G52570 phospholipase D alpha 2 phospholipase D alpha 2 0.61 0.31 -0.33
105 AT4G33210 F-box family protein SLOW MOTION 0.61 0.32 -0.34
106 AT1G08680 ARF GAP-like zinc finger-containing protein ZIGA4 ARF-GAP domain 14, ARF GAP-like
zinc finger-containing protein
ZIGA4		 0.61 0.3 -0.3
107 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 0.61 0.32 -0.31
108 AT1G27340 Galactose oxidase/kelch repeat superfamily protein -0.6 0.34 -0.31
109 AT3G16050 pyridoxine biosynthesis 1.2 A37, ARABIDOPSIS THALIANA
PYRIDOXINE BIOSYNTHESIS 1.2,
pyridoxine biosynthesis 1.2		 -0.6 0.31 -0.35
110 AT1G55805 BolA-like family protein -0.6 0.3 -0.31
111 AT2G27970 CDK-subunit 2 CDK-subunit 2 -0.6 0.32 -0.32
112 AT1G04070 translocase of outer membrane 22-I ATTOM22-I, translocase of outer
membrane 22-I		 -0.6 0.31 -0.31
113 AT3G11500 Small nuclear ribonucleoprotein family protein -0.59 0.32 -0.32
114 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.59 0.31 -0.33
115 AT3G07170 Sterile alpha motif (SAM) domain-containing protein -0.59 0.33 -0.33
116 AT4G12500 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.59 0.32 -0.29
117 AT1G09290 unknown protein; Has 73 Blast hits to 71 proteins in 26
species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11;
Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.59 0.31 -0.32
118 AT2G01090 Ubiquinol-cytochrome C reductase hinge protein -0.59 0.31 -0.32
119 AT5G59380 methyl-CPG-binding domain 6 ATMBD6, methyl-CPG-binding domain
6		 -0.58 0.31 -0.32
120 AT3G08630 Protein of unknown function (DUF3411) -0.58 0.32 -0.32
121 AT2G18970 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.33 -0.3
122 AT2G43620 Chitinase family protein -0.58 0.31 -0.32
123 AT4G24240 WRKY DNA-binding protein 7 ATWRKY7, WRKY DNA-binding protein
7		 -0.58 0.29 -0.33
124 AT2G43270 F-box and associated interaction domains-containing protein -0.58 0.33 -0.29
125 AT2G07505 zinc ion binding -0.58 0.32 -0.32
126 AT4G17640 casein kinase II beta chain 2 casein kinase II beta chain 2 -0.58 0.34 -0.34
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
127 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		0.67 0.45 -0.43 C0210
128 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.66 0.44 -0.45 C0233