AT1G60600 : ABERRANT CHLOROPLAST DEVELOPMENT 4
Query Information
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AGICode AT1G60600
Description UbiA prenyltransferase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 1 0.31 -0.32
2 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.92 0.32 -0.31
3 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.92 0.31 -0.32
4 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.91 0.31 -0.31
5 AT4G15110 cytochrome P450, family 97, subfamily B, polypeptide 3 cytochrome P450, family 97,
subfamily B, polypeptide 3		 0.91 0.31 -0.31
6 AT1G14030 Rubisco methyltransferase family protein 0.91 0.32 -0.3
7 AT3G60620 cytidinediphosphate diacylglycerol synthase 5 cytidinediphosphate diacylglycerol
synthase 5		 0.9 0.31 -0.33
8 AT1G44000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits
to 212 proteins in 76 species: Archae - 0; Bacteria - 96;
Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.9 0.31 -0.32
9 AT4G30825 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.31 -0.3
10 AT4G19985 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.89 0.33 -0.3
11 AT4G25080 magnesium-protoporphyrin IX methyltransferase magnesium-protoporphyrin IX
methyltransferase		 0.89 0.3 -0.31
12 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.89 0.31 -0.32
13 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.89 0.31 -0.33
14 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.89 0.31 -0.31
15 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.88 0.33 -0.33
16 AT2G17033 pentatricopeptide (PPR) repeat-containing protein 0.88 0.31 -0.33
17 AT1G21500 unknown protein; Has 29 Blast hits to 29 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.88 0.32 -0.31
18 AT1G78180 Mitochondrial substrate carrier family protein 0.88 0.32 -0.31
19 AT4G14870 secE/sec61-gamma protein transport protein SECE1 0.88 0.3 -0.3
20 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.88 0.31 -0.31
21 AT2G27060 Leucine-rich repeat protein kinase family protein 0.87 0.32 -0.32
22 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.87 0.31 -0.3
23 AT2G28605 Photosystem II reaction center PsbP family protein 0.87 0.3 -0.31
24 AT1G20870 HSP20-like chaperones superfamily protein 0.87 0.31 -0.31
25 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.87 0.32 -0.3
26 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.87 0.33 -0.32
27 AT2G41980 Protein with RING/U-box and TRAF-like domains 0.87 0.31 -0.32
28 AT4G32570 TIFY domain protein 8 TIFY domain protein 8 0.87 0.32 -0.3
29 AT4G24810 Protein kinase superfamily protein 0.86 0.3 -0.32
30 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 0.86 0.33 -0.33
31 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.86 0.33 -0.29
32 AT5G62840 Phosphoglycerate mutase family protein 0.86 0.31 -0.33
33 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.86 0.31 -0.32
34 AT3G05410 Photosystem II reaction center PsbP family protein 0.86 0.31 -0.3
35 AT3G25805 unknown protein; Has 98 Blast hits to 98 proteins in 45
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.86 0.29 -0.31
36 AT1G60990 Glycine cleavage T-protein family 0.86 0.32 -0.34
37 AT5G64380 Inositol monophosphatase family protein 0.86 0.32 -0.31
38 AT3G09580 FAD/NAD(P)-binding oxidoreductase family protein 0.85 0.33 -0.3
39 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.85 0.32 -0.34
40 AT4G20830 FAD-binding Berberine family protein -0.85 0.33 -0.3
41 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.85 0.3 -0.31
42 AT3G18680 Amino acid kinase family protein 0.85 0.32 -0.31
43 AT2G29290 NAD(P)-binding Rossmann-fold superfamily protein 0.85 0.32 -0.29
44 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.85 0.31 -0.32
45 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, photosystem I light
harvesting complex gene 6		 0.84 0.3 -0.32
46 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.84 0.31 -0.31
47 AT3G02450 cell division protein ftsH, putative 0.84 0.32 -0.32
48 AT4G27240 zinc finger (C2H2 type) family protein 0.84 0.34 -0.32
49 AT5G52180 LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Transmembrane protein 161AB, predicted
(InterPro:IPR019395); Has 82 Blast hits to 82 proteins in
35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi -
0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.84 0.35 -0.31
50 AT5G02710 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240
proteins in 73 species: Archae - 10; Bacteria - 110;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 95 (source: NCBI BLink).		 0.84 0.31 -0.31
51 AT1G77460 Armadillo/beta-catenin-like repeat ; C2
calcium/lipid-binding domain (CaLB) protein		 0.84 0.33 -0.33
52 AT2G45150 cytidinediphosphate diacylglycerol synthase 4 cytidinediphosphate diacylglycerol
synthase 4		 0.84 0.33 -0.32
53 AT2G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G24506.1); Has 2795
Blast hits to 943 proteins in 155 species: Archae - 0;
Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).		 0.84 0.29 -0.31
54 AT1G47740 PPPDE putative thiol peptidase family protein 0.84 0.32 -0.32
55 AT4G28080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.3 -0.33
56 AT3G50530 CDPK-related kinase CDPK-related kinase 0.84 0.31 -0.3
57 AT5G20230 blue-copper-binding protein blue-copper-binding protein, BLUE
COPPER BINDING PROTEIN,
blue-copper-binding protein,
SENESCENCE ASSOCIATED GENE 14		 -0.84 0.3 -0.34
58 AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein 0.84 0.3 -0.32
59 AT2G48120 pale cress protein (PAC) PALE CRESS 0.84 0.31 -0.29
60 AT1G60550 enoyl-CoA hydratase/isomerase D DHNS, enoyl-CoA
hydratase/isomerase D		 0.83 0.33 -0.3
61 AT3G28040 Leucine-rich receptor-like protein kinase family protein 0.83 0.3 -0.33
62 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.83 0.3 -0.29
63 AT1G14700 purple acid phosphatase 3 ATPAP3, purple acid phosphatase 3 0.83 0.34 -0.33
64 AT2G21960 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in
59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi -
0; Plants - 134; Viruses - 0; Other Eukaryotes - 25
(source: NCBI BLink).		 0.83 0.33 -0.29
65 AT1G54500 Rubredoxin-like superfamily protein 0.83 0.33 -0.32
66 AT5G01920 Protein kinase superfamily protein State transition 8 0.83 0.3 -0.32
67 AT4G21750 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 MERISTEM LAYER 1 0.83 0.32 -0.31
68 AT2G30140 UDP-Glycosyltransferase superfamily protein -0.82 0.3 -0.34
69 AT4G05020 NAD(P)H dehydrogenase B2 NAD(P)H dehydrogenase B2 -0.82 0.3 -0.34
70 AT1G62300 WRKY family transcription factor ATWRKY6, WRKY6 -0.82 0.32 -0.32
71 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.82 0.32 -0.3
72 AT4G31550 WRKY DNA-binding protein 11 ATWRKY11, WRKY DNA-binding protein
11		 -0.81 0.3 -0.3
73 AT4G26060 Ribosomal protein L18ae family -0.81 0.31 -0.29
74 AT1G17170 glutathione S-transferase TAU 24 glutathione S-transferase TAU 24,
Arabidopsis thaliana Glutathione
S-transferase (class tau) 24,
glutathione S-transferase TAU 24		 -0.8 0.32 -0.31
75 AT5G26340 Major facilitator superfamily protein SUGAR TRANSPORT PROTEIN 13, MSS1,
SUGAR TRANSPORT PROTEIN 13		 -0.8 0.3 -0.3
76 AT4G24160 alpha/beta-Hydrolases superfamily protein -0.8 0.33 -0.32
77 AT3G08690 ubiquitin-conjugating enzyme 11 ATUBC11, ubiquitin-conjugating
enzyme 11		 -0.79 0.29 -0.33
78 AT2G33710 Integrase-type DNA-binding superfamily protein -0.79 0.32 -0.33
79 AT4G22530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.79 0.31 -0.32
80 AT4G31420 Zinc finger protein 622 -0.79 0.31 -0.31
81 AT4G30270 xyloglucan endotransglucosylase/hydrolase 24 MERISTEM 5, meristem-5, SENESCENCE
4, xyloglucan
endotransglucosylase/hydrolase 24		 -0.78 0.31 -0.31
82 AT3G15180 ARM repeat superfamily protein -0.78 0.33 -0.35
83 AT5G63790 NAC domain containing protein 102 NAC domain containing protein 102,
NAC domain containing protein 102		 -0.78 0.33 -0.32
84 AT5G06860 polygalacturonase inhibiting protein 1 POLYGALACTURONASE INHIBITING
PROTEIN 1, polygalacturonase
inhibiting protein 1		 -0.78 0.32 -0.31
85 AT4G23190 cysteine-rich RLK (RECEPTOR-like protein kinase) 11 RECEPTOR LIKE PROTEIN KINASE 3,
cysteine-rich RLK (RECEPTOR-like
protein kinase) 11		 -0.78 0.3 -0.31
86 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.78 0.33 -0.31
87 AT5G20910 RING/U-box superfamily protein ABI3-interacting protein 2 -0.78 0.33 -0.3
88 AT2G15490 UDP-glycosyltransferase 73B4 UDP-glycosyltransferase 73B4 -0.78 0.31 -0.31
89 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.78 0.33 -0.31
90 AT3G22370 alternative oxidase 1A alternative oxidase 1A, ATAOX1A,
AtHSR3, hyper-sensitivity-related
3		 -0.77 0.31 -0.34
91 AT1G18390 Protein kinase superfamily protein -0.77 0.31 -0.32
92 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.77 0.3 -0.31
93 AT1G21450 SCARECROW-like 1 SCARECROW-like 1 -0.77 0.3 -0.32
94 AT4G01870 tolB protein-related -0.77 0.32 -0.34
95 AT1G33030 O-methyltransferase family protein -0.77 0.28 -0.31
96 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.77 0.31 -0.32
97 AT1G72900 Toll-Interleukin-Resistance (TIR) domain-containing protein -0.77 0.31 -0.32
98 AT2G02370 SNARE associated Golgi protein family -0.77 0.32 -0.32
99 AT1G29690 MAC/Perforin domain-containing protein constitutively activated cell
death 1		 -0.76 0.31 -0.3
100 AT2G39725 LYR family of Fe/S cluster biogenesis protein -0.76 0.32 -0.32
101 AT5G63880 SNF7 family protein VPS20.1 -0.76 0.31 -0.31
102 AT3G19260 LAG1 homologue 2 LONGEVITY ASSURANCE GENE1 HOMOLOG
2, LAG1 homologue 2		 -0.76 0.33 -0.33
103 AT5G54860 Major facilitator superfamily protein -0.76 0.33 -0.31
104 AT1G70530 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 cysteine-rich RLK (RECEPTOR-like
protein kinase) 3		 -0.76 0.31 -0.3
105 AT1G31130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in
29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi -
0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.75 0.3 -0.32
106 AT5G61010 exocyst subunit exo70 family protein E2 exocyst subunit exo70 family
protein E2, exocyst subunit exo70
family protein E2		 -0.75 0.33 -0.3
107 AT1G66880 Protein kinase superfamily protein -0.75 0.3 -0.29
108 AT1G01730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 42 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi
- 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.75 0.3 -0.32
109 AT3G53230 ATPase, AAA-type, CDC48 protein -0.75 0.34 -0.34
110 AT5G61820 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod
19 (InterPro:IPR011692); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.75 0.33 -0.31
111 AT3G51660 Tautomerase/MIF superfamily protein -0.75 0.32 -0.32
112 AT4G33920 Protein phosphatase 2C family protein -0.75 0.33 -0.31
113 AT5G01800 saposin B domain-containing protein -0.75 0.33 -0.31
114 AT2G37970 SOUL heme-binding family protein SOUL-1 -0.75 0.32 -0.31
115 AT1G17620 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.75 0.32 -0.34
116 AT3G28850 Glutaredoxin family protein -0.75 0.32 -0.33
117 AT2G06530 SNF7 family protein VPS2.1 -0.75 0.33 -0.26
118 AT1G28050 B-box type zinc finger protein with CCT domain -0.75 0.3 -0.29
119 AT1G02400 gibberellin 2-oxidase 6 Arabidopsis thaliana gibberellin
2-oxidase 4, ARABIDOPSIS THALIANA
GIBBERELLIN 2-OXIDASE 6,
DOWNSTREAM TARGET OF AGL15 1,
gibberellin 2-oxidase 6		 -0.74 0.31 -0.3
120 AT1G19020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits
to 88 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.32 -0.31
121 AT3G03610 ELMO/CED-12 family protein -0.74 0.32 -0.32
122 AT1G28190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits
to 162 proteins in 36 species: Archae - 0; Bacteria - 2;
Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other
Eukaryotes - 20 (source: NCBI BLink).		 -0.74 0.34 -0.3
123 AT5G38900 Thioredoxin superfamily protein -0.74 0.31 -0.31
124 AT5G51830 pfkB-like carbohydrate kinase family protein -0.74 0.31 -0.3
125 AT5G57630 CBL-interacting protein kinase 21 CBL-interacting protein kinase 21,
SNF1-RELATED PROTEIN KINASE 3.4		 -0.74 0.33 -0.3
126 AT3G07720 Galactose oxidase/kelch repeat superfamily protein -0.74 0.34 -0.3
127 AT3G50260 cooperatively regulated by ethylene and jasmonate 1 ATERF#011, cooperatively regulated
by ethylene and jasmonate 1, DREB
AND EAR MOTIF PROTEIN 1		 -0.74 0.32 -0.31
128 AT4G20860 FAD-binding Berberine family protein -0.74 0.31 -0.34
129 AT3G19910 RING/U-box superfamily protein -0.74 0.32 -0.29
130 AT5G48540 receptor-like protein kinase-related family protein -0.74 0.31 -0.34
131 AT3G08760 Protein kinase superfamily protein ATSIK -0.73 0.32 -0.33
132 AT3G54150 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.32 -0.33
133 AT1G76970 Target of Myb protein 1 -0.73 0.31 -0.32
134 AT4G17230 SCARECROW-like 13 SCARECROW-like 13 -0.73 0.33 -0.33
135 AT2G46500 phosphoinositide 4-kinase gamma 4 phosphoinositide 4-kinase gamma 4,
phosphoinositide 4-kinase gamma 4,
UBIQUITIN-LIKE DOMAIN KINASE GAMMA
4		 -0.73 0.31 -0.32
136 AT1G22280 phytochrome-associated protein phosphatase type 2C phytochrome-associated protein
phosphatase type 2C		 -0.73 0.33 -0.33