AT1G67360 : -
Query Information
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AGICode AT1G67360
Description Rubber elongation factor protein (REF)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G67360 Rubber elongation factor protein (REF) 1 0.31 -0.3
2 AT5G23850 Arabidopsis thaliana protein of unknown function (DUF821) 0.82 0.32 -0.31
3 AT3G03040 F-box/RNI-like superfamily protein -0.8 0.32 -0.32
4 AT5G50800 Nodulin MtN3 family protein AtSWEET13, SWEET13 0.8 0.31 -0.29
5 AT3G51240 flavanone 3-hydroxylase F3'H, flavanone 3-hydroxylase,
TRANSPARENT TESTA 6		 0.79 0.32 -0.33
6 AT3G07390 auxin-responsive family protein Auxin-Induced in Root cultures 12 0.78 0.3 -0.32
7 AT4G32940 gamma vacuolar processing enzyme gamma vacuolar processing enzyme,
GAMMAVPE		 0.78 0.3 -0.32
8 AT3G18830 polyol/monosaccharide transporter 5 POLYOL TRANSPORTER 5, ARABIDOPSIS
THALIANA POLYOL/MONOSACCHARIDE
TRANSPORTER 5,
polyol/monosaccharide transporter
5		 0.77 0.33 -0.31
9 AT1G26380 FAD-binding Berberine family protein 0.76 0.32 -0.32
10 AT1G62710 beta vacuolar processing enzyme beta vacuolar processing enzyme,
BETAVPE		 0.76 0.31 -0.33
11 AT4G15680 Thioredoxin superfamily protein -0.76 0.33 -0.32
12 AT2G37710 receptor lectin kinase receptor lectin kinase 0.76 0.31 -0.31
13 AT4G21380 receptor kinase 3 receptor kinase 3, receptor kinase
3		 0.76 0.31 -0.33
14 AT4G15690 Thioredoxin superfamily protein -0.75 0.33 -0.33
15 AT5G51770 Protein kinase superfamily protein 0.74 0.3 -0.32
16 AT4G39210 Glucose-1-phosphate adenylyltransferase family protein APL3 0.74 0.32 -0.31
17 AT1G25550 myb-like transcription factor family protein -0.74 0.32 -0.3
18 AT1G75040 pathogenesis-related gene 5 PR-5, pathogenesis-related gene 5 0.73 0.34 -0.33
19 AT3G14770 Nodulin MtN3 family protein AtSWEET2, SWEET2 -0.73 0.32 -0.33
20 AT1G64970 gamma-tocopherol methyltransferase gamma-tocopherol
methyltransferase, TMT1, VITAMIN E
DEFICIENT 4		 0.73 0.31 -0.32
21 AT4G30470 NAD(P)-binding Rossmann-fold superfamily protein 0.73 0.31 -0.31
22 AT5G18600 Thioredoxin superfamily protein -0.73 0.3 -0.32
23 AT1G32900 UDP-Glycosyltransferase superfamily protein granule bound starch synthase 1 0.73 0.31 -0.32
24 AT1G28230 purine permease 1 ATPUP1, purine permease 1 0.72 0.32 -0.32
25 AT1G78090 trehalose-6-phosphate phosphatase Arabidopsis thaliana
trehalose-6-phosphate phosphatase
B, trehalose-6-phosphate
phosphatase B		 -0.72 0.32 -0.32
26 AT3G21560 UDP-Glycosyltransferase superfamily protein UGT84A2 0.71 0.3 -0.3
27 AT5G14640 shaggy-like kinase 13 SHAGGY-LIKE KINASE 13, shaggy-like
kinase 13		 0.71 0.3 -0.32
28 AT3G27570 Sucrase/ferredoxin-like family protein 0.71 0.32 -0.3
29 AT4G09020 isoamylase 3 ATISA3, isoamylase 3 0.71 0.35 -0.31
30 AT1G77760 nitrate reductase 1 GNR1, nitrate reductase 1, NITRATE
REDUCTASE 1		 -0.71 0.32 -0.3
31 AT5G49360 beta-xylosidase 1 BETA-XYLOSIDASE 1, beta-xylosidase
1		 -0.71 0.31 -0.34
32 AT5G14120 Major facilitator superfamily protein -0.7 0.32 -0.32
33 AT3G48360 BTB and TAZ domain protein 2 ATBT2, BTB and TAZ domain protein
2		 -0.7 0.34 -0.31
34 AT1G51090 Heavy metal transport/detoxification superfamily protein 0.7 0.34 -0.32
35 AT1G16170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.3 -0.3
36 AT1G54120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits
to 23 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.31 -0.31
37 AT5G18670 beta-amylase 3 BETA-AMYLASE 9, beta-amylase 3 -0.69 0.31 -0.3
38 AT5G13170 senescence-associated gene 29 AtSWEET15, senescence-associated
gene 29, SWEET15		 0.69 0.32 -0.31
39 AT1G33970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.32 -0.31
40 AT2G42540 cold-regulated 15a COR15, cold-regulated 15a 0.69 0.32 -0.33
41 AT1G21120 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 2		 0.69 0.3 -0.32
42 AT4G02410 Concanavalin A-like lectin protein kinase family protein 0.69 0.32 -0.31
43 AT3G12580 heat shock protein 70 ARABIDOPSIS HEAT SHOCK PROTEIN 70,
heat shock protein 70		 0.69 0.32 -0.32
44 AT2G40570 initiator tRNA phosphoribosyl transferase family protein -0.69 0.29 -0.31
45 AT1G78070 Transducin/WD40 repeat-like superfamily protein 0.69 0.32 -0.3
46 AT3G54680 proteophosphoglycan-related 0.68 0.33 -0.3
47 AT2G30750 cytochrome P450, family 71, subfamily A, polypeptide 12 cytochrome P450, family 71,
subfamily A, polypeptide 12		 0.68 0.32 -0.32
48 AT3G18215 Protein of unknown function, DUF599 -0.68 0.31 -0.32
49 AT2G26150 heat shock transcription factor A2 heat shock transcription factor
A2, heat shock transcription
factor A2		 0.68 0.33 -0.31
50 AT4G15700 Thioredoxin superfamily protein -0.68 0.29 -0.3
51 AT3G52180 dual specificity protein phosphatase (DsPTP1) family
protein		 ATPTPKIS1, ATSEX4,
DUAL-SPECIFICITY PROTEIN
PHOSPHATASE 4, STARCH-EXCESS 4		 0.68 0.32 -0.33
52 AT5G61550 U-box domain-containing protein kinase family protein -0.68 0.33 -0.32
53 AT5G53420 CCT motif family protein 0.67 0.31 -0.3
54 AT1G26420 FAD-binding Berberine family protein 0.67 0.32 -0.32
55 AT5G22920 CHY-type/CTCHY-type/RING-type Zinc finger protein -0.67 0.32 -0.32
56 AT5G22300 nitrilase 4 NITRILASE 4, nitrilase 4 0.67 0.3 -0.31
57 AT1G11840 glyoxalase I homolog glyoxalase I homolog, glyoxalase I
homolog		 0.67 0.34 -0.29
58 AT1G25230 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.67 0.3 -0.35
59 AT3G22840 Chlorophyll A-B binding family protein ELIP, EARLY LIGHT-INDUCABLE
PROTEIN		 0.67 0.31 -0.29
60 AT5G17220 glutathione S-transferase phi 12 ARABIDOPSIS THALIANA GLUTATHIONE
S-TRANSFERASE PHI 12, GLUTATHIONE
S-TRANSFERASE 26, glutathione
S-transferase phi 12, TRANSPARENT
TESTA 19		 0.67 0.31 -0.29
61 AT4G17550 Major facilitator superfamily protein glycerol-3-phosphate permease 4,
glycerol-3-phosphate permease 4		 0.67 0.34 -0.33
62 AT5G03210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 7 growth stages; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 AtDIP2, DBP-interacting protein 2 0.66 0.3 -0.33
63 AT1G69870 nitrate transporter 1.7 nitrate transporter 1.7 0.66 0.31 -0.33
64 AT3G46880 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G59080.1); Has 51 Blast
hits to 51 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.3 -0.34
65 AT5G58090 O-Glycosyl hydrolases family 17 protein -0.66 0.29 -0.31
66 AT5G52640 heat shock protein 90.1 ATHS83, HEAT SHOCK PROTEIN 90-1,
heat shock protein 90.1, HEAT
SHOCK PROTEIN 81-1, HSP81.1, HEAT
SHOCK PROTEIN 83, heat shock
protein 90.1		 0.66 0.3 -0.32
67 AT3G09780 CRINKLY4 related 1 ATCRR1, CRINKLY4 related 1 -0.66 0.3 -0.3
68 AT5G17050 UDP-glucosyl transferase 78D2 UDP-glucosyl transferase 78D2 0.66 0.33 -0.29
69 AT4G27940 manganese tracking factor for mitochondrial SOD2 ARABIDOPSIS MANGANESE TRACKING
FACTOR FOR MITOCHONDRIAL SOD2,
manganese tracking factor for
mitochondrial SOD2		 0.66 0.33 -0.31
70 AT5G51430 conserved oligomeric Golgi complex component-related / COG
complex component-related		 EMBRYO YELLOW 0.65 0.31 -0.32
71 AT1G23090 sulfate transporter 91 sulfate transporter 91, SULTR3;3 -0.65 0.32 -0.3
72 AT5G20250 Raffinose synthase family protein DARK INDUCIBLE 10, raffinose
synthase 6		 -0.65 0.3 -0.31
73 AT4G23150 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 cysteine-rich RLK (RECEPTOR-like
protein kinase) 7		 0.65 0.31 -0.31
74 AT3G13070 CBS domain-containing protein / transporter associated
domain-containing protein		 -0.65 0.31 -0.31
75 AT3G62930 Thioredoxin superfamily protein -0.64 0.32 -0.33
76 AT5G56870 beta-galactosidase 4 beta-galactosidase 4 -0.64 0.32 -0.29
77 AT5G05270 Chalcone-flavanone isomerase family protein 0.64 0.3 -0.32
78 AT5G64410 oligopeptide transporter 4 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 4, oligopeptide
transporter 4		 -0.64 0.32 -0.29
79 AT1G62430 CDP-diacylglycerol synthase 1 CDP-diacylglycerol synthase 1,
CDP-diacylglycerol synthase 1		 0.64 0.31 -0.28
80 AT2G05160 CCCH-type zinc fingerfamily protein with RNA-binding domain -0.64 0.33 -0.32
81 AT1G54730 Major facilitator superfamily protein -0.64 0.31 -0.29
82 AT2G28440 proline-rich family protein -0.64 0.32 -0.32
83 AT4G35210 Arabidopsis protein of unknown function (DUF241) -0.64 0.31 -0.3
84 AT2G26980 CBL-interacting protein kinase 3 CBL-interacting protein kinase 3,
SNF1-RELATED PROTEIN KINASE 3.17		 -0.64 0.35 -0.31
85 AT1G16850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to salt stress; LOCATED IN:
endomembrane system; EXPRESSED IN: leaf apex, leaf whorl,
male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six
leaves visible, LP.04 four leaves visible, LP.10 ten leaves
visible, petal differentiation and expansion stage, LP.08
eight leaves visible; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast
hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.31 -0.35
86 AT5G07990 Cytochrome P450 superfamily protein CYTOCHROME P450 75B1, D501,
TRANSPARENT TESTA 7		 0.64 0.31 -0.29
87 AT4G17670 Protein of unknown function (DUF581) 0.63 0.3 -0.29
88 AT3G15350 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.63 0.3 -0.28
89 AT1G19630 cytochrome P450, family 722, subfamily A, polypeptide 1 cytochrome P450, family 722,
subfamily A, polypeptide 1		 0.63 0.33 -0.35
90 AT2G31810 ACT domain-containing small subunit of acetolactate
synthase protein		 -0.63 0.33 -0.32
91 AT1G02270 Calcium-binding endonuclease/exonuclease/phosphatase family 0.63 0.3 -0.33
92 AT4G17020 transcription factor-related -0.62 0.3 -0.32
93 AT3G15630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast
hits to 61 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.32 -0.32
94 AT2G30070 potassium transporter 1 potassium transporter 1, ATKT1P,
ATKUP1, potassium transporter 1,
POTASSIUM UPTAKE TRANSPORTER 1		 -0.62 0.31 -0.31
95 AT2G23290 myb domain protein 70 myb domain protein 70, myb domain
protein 70		 -0.62 0.33 -0.34
96 AT4G23220 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 cysteine-rich RLK (RECEPTOR-like
protein kinase) 14		 0.62 0.31 -0.35
97 AT3G27580 Protein kinase superfamily protein ATPK7, D6 PROTEIN KINASE LIKE 3 -0.61 0.3 -0.31
98 AT2G16750 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.61 0.34 -0.32
99 AT5G53160 regulatory components of ABA receptor 3 PYR1-like 8, regulatory components
of ABA receptor 3		 -0.61 0.32 -0.3
100 AT1G32330 heat shock transcription factor A1D heat shock transcription factor
A1D, heat shock transcription
factor A1D		 -0.61 0.32 -0.31
101 AT1G60960 iron regulated transporter 3 IRON REGULATED TRANSPORTER 3, iron
regulated transporter 3		 -0.61 0.32 -0.31
102 AT4G14130 xyloglucan endotransglucosylase/hydrolase 15 xyloglucan
endotransglucosylase/hydrolase 15,
xyloglucan endotransglycosylase 7		 -0.6 0.33 -0.32
103 AT2G28200 C2H2-type zinc finger family protein -0.6 0.31 -0.31
104 AT3G19030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pyridoxine biosynthetic process, homoserine
biosynthetic process; LOCATED IN: endomembrane system;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G49500.1); Has 22 Blast hits to 22
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.32 -0.32
105 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 -0.59 0.3 -0.31
106 AT2G38440 SCAR homolog 2 SCAR HOMOLOG 2, DIS3, IRREGULAR
TRICHOME BRANCH1, SCAR homolog 2,
WAVE4		 -0.59 0.32 -0.3
107 AT2G33250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G04310.1); Has 41 Blast
hits to 41 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.32 -0.3
108 AT2G14910 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in
102 species: Archae - 0; Bacteria - 300; Metazoa - 25;
Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191
(source: NCBI BLink).		 -0.59 0.31 -0.34
109 AT3G26030 serine/threonine protein phosphatase 2A 55 kDa regulatory
subunit B prime delta		 serine/threonine protein
phosphatase 2A 55 kDa regulatory
subunit B prime delta		 -0.58 0.31 -0.31
110 AT5G21160 LA RNA-binding protein -0.58 0.31 -0.31
111 AT3G57050 cystathionine beta-lyase cystathionine beta-lyase -0.58 0.31 -0.32
112 AT1G67480 Galactose oxidase/kelch repeat superfamily protein -0.58 0.31 -0.32
113 AT2G35820 ureidoglycolate hydrolases -0.58 0.29 -0.32
114 AT4G40060 homeobox protein 16 ATHB-16, homeobox protein 16,
homeobox protein 16		 -0.58 0.32 -0.31
115 AT1G14140 Mitochondrial substrate carrier family protein -0.58 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0168 MST_2023.2 - - - 0.64 0.44 -0.45
117 C0098 Glucose D-Glucose alpha-D-glucose; beta-D-glucose trehalose degradation II (trehalase),
indole glucosinolate breakdown (active in intact plant cell),
coumarin biosynthesis (via 2-coumarate),
glucosinolate biosynthesis from tryptophan,
sinapate ester biosynthesis,
GDP-glucose biosynthesis,
coniferin metabolism,
melibiose degradation,
indole glucosinolate breakdown (insect chewing induced) 		0.63 0.31 -0.33 C0098
118 C0207 Phosphatidylglycerol-34:5 - - - -0.6 0.46 -0.44
119 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		-0.58 0.32 -0.3 C0058