AT1G67230 : CROWDED NUCLEI 1
Query Information
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AGICode AT1G67230
Description little nuclei1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 1 0.32 -0.29
2 AT2G44360 unknown protein; Has 23 Blast hits to 23 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.78 0.3 -0.32
3 AT5G20840 Phosphoinositide phosphatase family protein 0.71 0.33 -0.32
4 AT4G18130 phytochrome E phytochrome E 0.7 0.32 -0.33
5 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.7 0.3 -0.32
6 AT4G26460 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.69 0.3 -0.34
7 AT2G41810 Protein of unknown function, DUF642 -0.69 0.31 -0.33
8 AT1G05205 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.33 -0.3
9 AT3G12810 SNF2 domain-containing protein / helicase domain-containing
protein		 chr13, PHOTOPERIOD-INDEPENDENT
EARLY FLOWERING 1, SRCAP		 0.67 0.32 -0.31
10 AT3G62560 Ras-related small GTP-binding family protein -0.67 0.3 -0.3
11 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.67 0.33 -0.34
12 AT4G16444 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
CHD5-like protein (InterPro:IPR007514); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.31 -0.31
13 AT2G07650 transposable element gene 0.66 0.31 -0.34
14 AT2G04550 indole-3-butyric acid response 5 DUAL SPECIFICITY PROTEIN
PHOSPHATASE 1E, indole-3-butyric
acid response 5		 -0.66 0.32 -0.31
15 AT5G55940 Uncharacterised protein family (UPF0172) embryo defective 2731 -0.66 0.32 -0.36
16 AT2G39850 Subtilisin-like serine endopeptidase family protein 0.65 0.31 -0.32
17 AT3G33530 Transducin family protein / WD-40 repeat family protein 0.65 0.33 -0.29
18 AT2G35910 RING/U-box superfamily protein -0.65 0.33 -0.32
19 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.65 0.31 -0.31
20 AT5G63940 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.65 0.32 -0.32
21 AT5G16470 zinc finger (C2H2 type) family protein -0.64 0.35 -0.3
22 AT5G15770 glucose-6-phosphate acetyltransferase 1 glucose-6-phosphate
acetyltransferase 1,
glucose-6-phosphate
acetyltransferase 1		 -0.64 0.3 -0.3
23 AT1G24706 THO2 AtTHO2, EMBRYO DEFECTIVE 2793,
THO2		 0.64 0.29 -0.3
24 AT2G43350 glutathione peroxidase 3 glutathione peroxidase 3,
glutathione peroxidase 3		 -0.64 0.33 -0.3
25 AT5G52840 NADH-ubiquinone oxidoreductase-related -0.64 0.33 -0.32
26 AT2G21870 copper ion binding;cobalt ion binding;zinc ion binding MALE GAMETOPHYTE DEFECTIVE 1 -0.64 0.3 -0.29
27 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.64 0.34 -0.33
28 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 0.64 0.34 -0.3
29 AT1G26500 Pentatricopeptide repeat (PPR) superfamily protein 0.63 0.32 -0.29
30 AT5G45610 protein dimerizations SENSITIVE TO UV 2 0.63 0.32 -0.32
31 AT1G68100 ZIP metal ion transporter family IAA-ALANINE RESISTANT 1 -0.63 0.32 -0.32
32 AT3G19960 myosin 1 myosin 1 0.63 0.32 -0.33
33 AT2G28070 ABC-2 type transporter family protein ATP-binding cassette G3 0.63 0.31 -0.31
34 AT4G04970 glucan synthase-like 1 GLUCAN SYNTHASE LIKE 1, GLUCAN
SYNTHASE LIKE-1, GSL01, glucan
synthase-like 1		 0.63 0.31 -0.33
35 AT5G39250 F-box family protein -0.63 0.32 -0.31
36 AT5G63400 adenylate kinase 1 adenylate kinase 1 -0.63 0.32 -0.33
37 AT5G14105 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.32 -0.34
38 AT5G54280 myosin 2 myosin 2, ARABIDOPSIS THALIANA
MYOSIN 4, ARABIDOPSIS THALIANA
MYOSIN 1		 0.62 0.31 -0.32
39 AT1G47310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.62 0.31 -0.32
40 AT4G16280 RNA binding;abscisic acid binding FCA 0.62 0.31 -0.31
41 AT1G53530 Peptidase S24/S26A/S26B/S26C family protein -0.62 0.32 -0.3
42 AT5G04390 C2H2-type zinc finger family protein -0.62 0.32 -0.31
43 AT4G37020 BEST Arabidopsis thaliana protein match is: eukaryotic
initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.31 -0.32
44 AT5G03320 Protein kinase superfamily protein -0.62 0.31 -0.33
45 AT2G03150 ATP/GTP-binding protein family embryo defective 1579 0.62 0.3 -0.33
46 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.62 0.35 -0.34
47 AT3G21430 DNA binding ALWAYS EARLY 3, ARABIDOPSIS
THALIANA ALWAYS EARLY 3		 0.62 0.32 -0.33
48 AT1G17890 NAD(P)-binding Rossmann-fold superfamily protein GER2 -0.62 0.32 -0.29
49 AT1G11790 arogenate dehydratase 1 arogenate dehydratase 1,
Arabidopsis thaliana arogenate
dehydratase 1		 0.61 0.34 -0.31
50 AT2G33845 Nucleic acid-binding, OB-fold-like protein -0.61 0.32 -0.28
51 AT3G20040 Hexokinase ATHXK4, HEXOKINASE-LIKE 2 0.61 0.32 -0.33
52 AT4G03205 Coproporphyrinogen III oxidase hemf2 0.61 0.32 -0.32
53 AT5G54160 O-methyltransferase 1 O-methyltransferase 1,
O-methyltransferase 1		 -0.61 0.32 -0.3
54 AT3G22680 RNA-DIRECTED DNA METHYLATION 1 RNA-DIRECTED DNA METHYLATION 1 -0.61 0.32 -0.3
55 AT3G01390 vacuolar membrane ATPase 10 AVMA10, vacuolar membrane ATPase
10		 -0.61 0.3 -0.32
56 AT5G09410 ethylene induced calmodulin binding protein calmodulin-binding transcription
activator 1, ethylene induced
calmodulin binding protein		 0.61 0.32 -0.32
57 AT3G43760 transposable element gene 0.61 0.35 -0.32
58 AT3G12370 Ribosomal protein L10 family protein -0.61 0.29 -0.34
59 AT4G21550 VP1/ABI3-like 3 VP1/ABI3-like 3 0.6 0.31 -0.29
60 AT1G27340 Galactose oxidase/kelch repeat superfamily protein -0.6 0.31 -0.33
61 AT5G16060 Cytochrome c oxidase biogenesis protein Cmc1-like -0.6 0.33 -0.3
62 AT2G46930 Pectinacetylesterase family protein -0.6 0.33 -0.33
63 AT5G19660 SITE-1 protease SITE-1 PROTEASE, ATSBT6.1, SITE-1
protease		 0.6 0.32 -0.31
64 AT2G44610 Ras-related small GTP-binding family protein ATRAB6A, ATRABH1B, RAB6, RAB6A -0.6 0.32 -0.32
65 AT1G11755 Undecaprenyl pyrophosphate synthetase family protein LEAF WILTING 1 -0.6 0.33 -0.33
66 AT1G15750 Transducin family protein / WD-40 repeat family protein TOPLESS, WUS-INTERACTING PROTEIN 1 0.6 0.3 -0.31
67 AT1G15020 quiescin-sulfhydryl oxidase 1 quiescin-sulfhydryl oxidase 1,
QSO2, quiescin-sulfhydryl oxidase
1		 -0.6 0.3 -0.31
68 AT4G21326 subtilase 3.12 subtilase 3.12, subtilase 3.12 0.6 0.3 -0.3
69 AT2G01130 DEA(D/H)-box RNA helicase family protein 0.6 0.33 -0.31
70 AT3G63180 TIC-like TICKLE, TIC-like 0.6 0.33 -0.32
71 AT4G32551 LisH dimerisation motif;WD40/YVTN repeat-like-containing
domain		 LEUNIG, ROTUNDA 2 0.6 0.32 -0.31
72 AT5G08210 MIR834a; miRNA microRNA834A 0.6 0.3 -0.34
73 AT2G27980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.6 0.31 -0.31
74 AT4G17640 casein kinase II beta chain 2 casein kinase II beta chain 2 -0.6 0.31 -0.32
75 AT1G03900 non-intrinsic ABC protein 4 ATP-binding cassette I18,
non-intrinsic ABC protein 4,
non-intrinsic ABC protein 4		 -0.59 0.31 -0.3
76 AT5G13450 delta subunit of Mt ATP synthase delta subunit of Mt ATP synthase -0.59 0.3 -0.32
77 AT2G03690 coenzyme Q biosynthesis Coq4 family protein / ubiquinone
biosynthesis Coq4 family protein		 -0.59 0.31 -0.33
78 AT5G17030 UDP-glucosyl transferase 78D3 UDP-glucosyl transferase 78D3 0.59 0.32 -0.33
79 AT3G19770 Vacuolar sorting protein 9 (VPS9) domain ARABIDOPSIS THALIANA VACUOLAR
PROTEIN SORTING 9A, VPS9, VPS9A		 -0.59 0.31 -0.32
80 AT1G06490 glucan synthase-like 7 Arabidopsis thaliana glucan
synthase-like 7, atgsl7, callose
synthase 7, gsl07, glucan
synthase-like 7, glucan
synthase-like 7		 0.59 0.32 -0.32
81 AT5G59210 myosin heavy chain-related -0.59 0.31 -0.33
82 AT2G39580 CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain
(InterPro:IPR019607); Has 249 Blast hits to 219 proteins in
85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi
- 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18
(source: NCBI BLink).		 0.59 0.29 -0.33
83 AT3G05830 Encodes alpha-helical IF (intermediate filament)-like
protein.		 0.59 0.32 -0.32
84 AT1G27370 squamosa promoter binding protein-like 10 squamosa promoter binding
protein-like 10		 0.59 0.34 -0.34
85 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 -0.59 0.33 -0.3
86 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 0.59 0.3 -0.31
87 AT4G20150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plasma membrane, mitochondrial respiratory
chain complex I, respiratory chain complex I; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 -0.58 0.31 -0.32
88 AT2G33470 glycolipid transfer protein 1 ARABIDOPSIS GLYCOLIPID TRANSFER
PROTEIN 1, glycolipid transfer
protein 1		 -0.58 0.31 -0.32
89 AT3G61390 RING/U-box superfamily protein 0.58 0.3 -0.33
90 AT1G33980 Smg-4/UPF3 family protein ATUPF3, UPF3 0.58 0.31 -0.3
91 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 0.58 0.3 -0.31
92 AT2G42270 U5 small nuclear ribonucleoprotein helicase 0.58 0.32 -0.33
93 AT5G27410 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.58 0.32 -0.3
94 AT4G33640 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.58 0.29 -0.3
95 AT1G59820 aminophospholipid ATPase 3 aminophospholipid ATPase 3 0.58 0.33 -0.3
96 AT5G58220 transthyretin-like protein allantoin synthase,
transthyretin-like protein		 -0.58 0.35 -0.3
97 AT1G77590 long chain acyl-CoA synthetase 9 long chain acyl-CoA synthetase 9 0.57 0.33 -0.3
98 AT2G39520 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.57 0.34 -0.32
99 AT2G42330 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 0.57 0.34 -0.34
100 AT2G32390 glutamate receptor 3.5 glutamate receptor 3.5, glutamate
receptor 3.5, GLR6		 -0.57 0.31 -0.28
101 AT1G51300 alpha/beta-Hydrolases superfamily protein 0.57 0.31 -0.31
102 AT3G46920 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 0.57 0.31 -0.31
103 AT5G05310 TLC ATP/ADP transporter 0.57 0.35 -0.32
104 AT2G16600 rotamase CYP 3 rotamase CYP 3 -0.57 0.33 -0.35
105 AT5G04050 RNA-directed DNA polymerase (reverse transcriptase) 0.57 0.29 -0.32
106 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.57 0.32 -0.31
107 AT3G09290 telomerase activator1 telomerase activator1 -0.56 0.34 -0.3
108 AT3G07420 asparaginyl-tRNA synthetase 2 ASPARAGINYL-TRNA SYNTHETASE 2,
asparaginyl-tRNA synthetase 2,
SYNTHETASE C2, ASPARAGINYL-TRNA
SYNTHETASE 2		 0.56 0.3 -0.32
109 AT1G18290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.56 0.33 -0.33
110 AT5G63910 farnesylcysteine lyase farnesylcysteine lyase -0.56 0.31 -0.3
111 AT4G32730 Homeodomain-like protein ATMYB3R-1, ARABIDOOSIS THALIANA
MYB DOMAIN PROTEIN 3R1, MYB DOMAIN
PROTEIN 3R1, C-MYB-LIKE
TRANSCRIPTION FACTOR 3R-1, PC-MYB1		 0.56 0.31 -0.35
112 AT3G01640 glucuronokinase G ARABIDOPSIS THALIANA
GLUCURONOKINASE, glucuronokinase G		 -0.56 0.32 -0.3
113 AT3G32060 transposable element gene -0.56 0.29 -0.32
114 AT5G38070 RING/FYVE/PHD zinc finger superfamily protein 0.56 0.3 -0.33
115 AT1G20890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.55 0.33 -0.31
116 AT5G38630 cytochrome B561-1 cytochrome B561-1, cytochrome
B561-1		 -0.55 0.31 -0.33
117 AT5G19830 Peptidyl-tRNA hydrolase family protein -0.55 0.32 -0.31
118 AT5G63510 gamma carbonic anhydrase like 1 gamma carbonic anhydrase like 1 -0.55 0.31 -0.31
119 AT4G37830 cytochrome c oxidase-related -0.55 0.31 -0.33
120 AT5G65130 Integrase-type DNA-binding superfamily protein -0.55 0.3 -0.31
121 AT3G20580 COBRA-like protein 10 precursor COBRA-like protein 10 precursor -0.55 0.33 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		0.72 0.45 -0.48 C0109
123 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		0.69 0.46 -0.45 C0210
124 C0229 Robinin - - flavone biosynthesis 0.68 0.45 -0.43
125 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.66 0.43 -0.41 C0233
126 C0089 Fortunellin - - - 0.66 0.44 -0.45
127 C0019 1-O-β-Glucopyranosylsinapic acid 1-O-β-D-Glucopyranosylsinapic acid - phenylpropanoid pathwayl,
lignin biosynthesis 		0.66 0.47 -0.45
128 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		0.65 0.45 -0.43 C0107
129 C0248 Sulfoquinovosyldiacylglycerol-36:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.65 0.52 -0.48 C0248
130 C0212 PR_MST_2336.8 - - - 0.62 0.45 -0.44