AT1G62440 : leucine-rich repeat/extensin 2
Query Information
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AGICode AT1G62440
Description leucine-rich repeat/extensin 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G62440 leucine-rich repeat/extensin 2 leucine-rich repeat/extensin 2 1 0.34 -0.32
2 AT5G10210 CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane
targeting (InterPro:IPR000008); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G65030.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.7 0.31 -0.3
3 AT1G01750 actin depolymerizing factor 11 actin depolymerizing factor 11 0.69 0.31 -0.32
4 AT1G03010 Phototropic-responsive NPH3 family protein 0.69 0.32 -0.3
5 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.68 0.31 -0.31
6 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.32 -0.31
7 AT3G59490 unknown protein; Has 30 Blast hits to 30 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.66 0.32 -0.3
8 AT5G07680 NAC domain containing protein 80 Arabidopsis NAC domain containing
protein 79, NAC domain containing
protein 80, ATNAC4, NAC domain
containing protein 80		 0.66 0.34 -0.31
9 AT5G13910 Integrase-type DNA-binding superfamily protein LEAFY PETIOLE 0.64 0.34 -0.32
10 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 0.64 0.33 -0.3
11 AT2G38890 unknown protein; Has 58 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0;
Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.63 0.35 -0.31
12 AT5G40230 nodulin MtN21 /EamA-like transporter family protein 0.63 0.31 -0.31
13 AT4G13230 Late embryogenesis abundant protein (LEA) family protein -0.63 0.3 -0.32
14 AT3G62160 HXXXD-type acyl-transferase family protein -0.63 0.33 -0.33
15 AT1G14390 Leucine-rich repeat protein kinase family protein 0.63 0.32 -0.31
16 AT5G66710 Protein kinase superfamily protein 0.63 0.33 -0.32
17 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 -0.63 0.34 -0.29
18 AT5G55490 gamete expressed protein 1 GAMETE EXPRESSED PROTEIN 1, gamete
expressed protein 1		 0.63 0.32 -0.29
19 AT5G53460 NADH-dependent glutamate synthase 1 NADH-dependent glutamate synthase
1		 0.63 0.32 -0.31
20 AT1G79990 structural molecules 0.63 0.34 -0.31
21 AT5G65950 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1683, C-terminal
(InterPro:IPR012880), Foie gras liver health family 1
(InterPro:IPR021773); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.62 0.29 -0.3
22 AT4G25220 root hair specific 15 glycerol-3-phosphate permease 2,
glycerol-3-phosphate permease 2,
root hair specific 15		 0.62 0.32 -0.3
23 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 0.62 0.32 -0.3
24 AT1G46912 F-box associated ubiquitination effector family protein 0.62 0.3 -0.32
25 AT1G76430 phosphate transporter 1;9 phosphate transporter 1;9 0.62 0.33 -0.32
26 AT3G24750 unknown protein; Has 25 Blast hits to 25 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.3 -0.31
27 AT3G56500 serine-rich protein-related -0.62 0.32 -0.31
28 AT2G16260 pseudogene of glycine-rich RNA-binding protein glycine-rich RNA-binding protein 1 0.62 0.35 -0.32
29 AT5G58010 LJRHL1-like 3 LJRHL1-like 3 0.62 0.33 -0.32
30 AT2G44230 Plant protein of unknown function (DUF946) -0.61 0.32 -0.33
31 AT4G34500 Protein kinase superfamily protein -0.61 0.31 -0.32
32 AT5G22410 root hair specific 18 root hair specific 18 0.61 0.32 -0.33
33 AT4G40090 arabinogalactan protein 3 arabinogalactan protein 3 0.61 0.32 -0.32
34 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 0.61 0.32 -0.32
35 AT3G42350 transposable element gene 0.6 0.31 -0.31
36 AT5G51320 transposable element gene -0.6 0.32 -0.33
37 AT1G68940 Armadillo/beta-catenin-like repeat family protein 0.6 0.32 -0.32
38 AT2G24000 serine carboxypeptidase-like 22 serine carboxypeptidase-like 22 -0.59 0.35 -0.29
39 AT5G67460 O-Glycosyl hydrolases family 17 protein -0.59 0.3 -0.3
40 AT3G24650 AP2/B3-like transcriptional factor family protein ABA INSENSITIVE 3, ABSCISIC ACID
INSENSITIVE 3, SUGAR INSENSITIVE
10		 0.59 0.33 -0.28
41 AT4G36620 GATA transcription factor 19 GATA transcription factor 19,
hanaba taranu like 2		 0.59 0.31 -0.33
42 AT5G61150 leo1-like family protein VERNALIZATION INDEPENDENCE 4 0.59 0.33 -0.33
43 AT4G33330 plant glycogenin-like starch initiation protein 3 glucuronic acid substitution of
xylan 2, plant glycogenin-like
starch initiation protein 3		 -0.59 0.34 -0.3
44 AT3G60330 H(+)-ATPase 7 H(+)-ATPase 7, H(+)-ATPase 7 0.59 0.32 -0.32
45 AT1G35210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF740 (InterPro:IPR008004);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.59 0.29 -0.31
46 AT5G49050 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to stress; LOCATED IN: cellular_component unknown;
CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016),
Rossmann-like alpha/beta/alpha sandwich fold
(InterPro:IPR014729); BEST Arabidopsis thaliana protein
match is: Adenine nucleotide alpha hydrolases-like
superfamily protein (TAIR:AT2G47710.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.59 0.3 -0.32
47 AT4G22650 CONTAINS InterPro DOMAIN/s: Plant lipid transfer
protein/seed storage/trypsin-alpha amylase inhibitor
(InterPro:IPR003612); BEST Arabidopsis thaliana protein
match is: Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
(TAIR:AT4G22640.1); Has 25 Blast hits to 25 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.29 -0.33
48 AT1G18740 Protein of unknown function (DUF793) -0.59 0.32 -0.31
49 AT1G73540 nudix hydrolase homolog 21 nudix hydrolase homolog 21, nudix
hydrolase homolog 21		 -0.58 0.33 -0.31
50 AT5G57200 ENTH/ANTH/VHS superfamily protein 0.58 0.3 -0.32
51 AT2G14230 transposable element gene -0.58 0.31 -0.32
52 AT3G43060 transposable element gene -0.57 0.32 -0.32
53 AT5G07030 Eukaryotic aspartyl protease family protein -0.57 0.31 -0.3
54 AT1G32240 Homeodomain-like superfamily protein KANADI 2 0.57 0.29 -0.32
55 AT2G26850 F-box family protein -0.57 0.32 -0.33
56 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 -0.57 0.34 -0.34
57 AT1G02950 glutathione S-transferase F4 glutathione S-transferase F4,
GLUTATHIONE S-TRANSFERASE 31,
glutathione S-transferase F4		 -0.56 0.29 -0.32
58 AT4G08430 Ulp1 protease family protein -0.56 0.32 -0.32
59 AT1G52610 transposable element gene -0.56 0.31 -0.34
60 AT4G17990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17700.1); Has 134 Blast hits
to 131 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.31 -0.32
61 AT5G44440 FAD-binding Berberine family protein 0.56 0.32 -0.32
62 AT4G25470 C-repeat/DRE binding factor 2 ATCBF2, C-repeat/DRE binding
factor 2, DRE/CRT-BINDING PROTEIN
1C, FREEZING TOLERANCE QTL 4		 -0.56 0.31 -0.33
63 AT1G62450 Immunoglobulin E-set superfamily protein -0.55 0.3 -0.32
64 AT5G25570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.55 0.31 -0.32
65 AT3G21830 SKP1-like 8 SKP1-like 8, SKP1-like 8 -0.55 0.32 -0.32
66 AT4G27280 Calcium-binding EF-hand family protein -0.55 0.29 -0.32
67 AT5G56480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.55 0.31 -0.32
68 AT2G11235 transposable element gene -0.55 0.3 -0.33
69 AT3G44760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root, flower; EXPRESSED
DURING: petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast hits to 9
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.55 0.33 -0.34
70 AT1G50530 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.55 0.3 -0.3
71 AT5G47850 CRINKLY4 related 4 CRINKLY4 related 4 -0.55 0.3 -0.33
72 AT5G61550 U-box domain-containing protein kinase family protein 0.55 0.31 -0.31
73 AT1G49800 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sepal, male gametophyte,
stamen; EXPRESSED DURING: 4 anthesis; Has 12 Blast hits to
12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink).		 0.55 0.32 -0.32
74 AT1G61760 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.55 0.34 -0.31
75 AT1G27740 root hair defective 6-like 4 root hair defective 6-like 4 0.55 0.33 -0.31
76 AT1G26620 Plant protein of unknown function (DUF863) 0.55 0.3 -0.31
77 AT2G17950 Homeodomain-like superfamily protein PGA6, WUSCHEL, WUSCHEL 1 -0.54 0.35 -0.32
78 AT5G54855 Pollen Ole e 1 allergen and extensin family protein -0.54 0.3 -0.29
79 AT4G27657 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G54145.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.54 0.31 -0.31
80 AT3G24270 pumilio 25 pumilio 25, pumilio 25 -0.54 0.3 -0.32
81 AT5G52140 RING/U-box superfamily protein -0.53 0.33 -0.33
82 AT2G22750 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.53 0.32 -0.32
83 ATMG00680 hypothetical protein ORF122C -0.53 0.29 -0.31
84 AT1G09610 Protein of unknown function (DUF579) -0.52 0.27 -0.32
85 AT3G17620 F-box and associated interaction domains-containing protein -0.52 0.32 -0.32
86 AT3G04690 Malectin/receptor-like protein kinase family protein ANXUR1 -0.52 0.31 -0.31
87 AT3G43790 zinc induced facilitator-like 2 zinc induced facilitator-like 2 -0.52 0.3 -0.33
88 AT3G29510 transposable element gene -0.52 0.31 -0.3
89 AT1G73290 serine carboxypeptidase-like 5 serine carboxypeptidase-like 5 -0.52 0.32 -0.32
90 AT1G75800 Pathogenesis-related thaumatin superfamily protein -0.52 0.32 -0.3
91 AT3G05720 importin alpha isoform 7 importin alpha isoform 7 -0.52 0.32 -0.3
92 AT5G48280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.51 0.3 -0.33
93 AT3G12200 NIMA-related kinase 7 NIMA-related kinase 7,
NIMA-related kinase 7		 -0.51 0.29 -0.31
94 AT5G26920 Cam-binding protein 60-like G Cam-binding protein 60-like G -0.51 0.3 -0.34
95 AT5G61600 ethylene response factor 104 ethylene response factor 104 -0.51 0.32 -0.3
96 AT1G41820 unknown protein; Has 46 Blast hits to 46 proteins in 21
species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2;
Plants - 5; Viruses - 1; Other Eukaryotes - 24 (source:
NCBI BLink).		 -0.51 0.3 -0.33
97 AT3G30230 myosin heavy chain-related -0.51 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
98 C0176 MST_2406.9 - - - -0.7 0.46 -0.46
99 C0172 MST_2214.3 - - - -0.67 0.45 -0.47