AT1G55410 : -
Query Information
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AGICode AT1G55410
Description pseudogene, CHP-rich zinc finger protein, putative, similar to putative CHP-rich zinc finger protein GB:CAB77744 GI:7268217 from (Arabidopsis thaliana)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G55410 pseudogene, CHP-rich zinc finger protein, putative, similar
to putative CHP-rich zinc finger protein GB:CAB77744
GI:7268217 from (Arabidopsis thaliana)		 1 0.35 -0.31
2 AT3G07440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits
to 37 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.74 0.33 -0.32
3 AT5G18180 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.7 0.3 -0.31
4 AT3G49162 pseudogene of glycoside hydrolase family 28 protein -0.7 0.31 -0.31
5 AT2G16210 Transcriptional factor B3 family protein 0.7 0.29 -0.3
6 AT3G09530 exocyst subunit exo70 family protein H3 exocyst subunit exo70 family
protein H3, exocyst subunit exo70
family protein H3		 0.69 0.31 -0.31
7 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.34
8 AT1G43790 tracheary element differentiation-related 6 tracheary element
differentiation-related 6		 -0.68 0.31 -0.32
9 AT4G38000 DNA binding with one finger 4.7 DNA binding with one finger 4.7 0.68 0.32 -0.32
10 AT5G27050 AGAMOUS-like 101 AGAMOUS-like 101 0.67 0.32 -0.29
11 AT5G04200 metacaspase 9 metacaspase 9, metacaspase 2f,
metacaspase 9, metacaspase 2f		 -0.67 0.3 -0.33
12 AT2G44260 Plant protein of unknown function (DUF946) -0.67 0.3 -0.34
13 AT3G16380 poly(A) binding protein 6 poly(A) binding protein 6 0.66 0.32 -0.31
14 AT5G02740 Ribosomal protein S24e family protein -0.66 0.3 -0.29
15 AT5G01860 C2H2 and C2HC zinc fingers superfamily protein 0.66 0.32 -0.3
16 AT3G42160 Pectin lyase-like superfamily protein 0.65 0.32 -0.32
17 AT1G45160 Protein kinase superfamily protein 0.65 0.32 -0.33
18 AT1G07160 Protein phosphatase 2C family protein 0.65 0.29 -0.32
19 AT3G57860 UV-B-insensitive 4-like GIGAS CELL 1, OMISSION OF SECOND
DIVISION, UV-B-insensitive 4-like		 -0.64 0.3 -0.31
20 AT1G09020 homolog of yeast sucrose nonfermenting 4 ATSNF4, homolog of yeast sucrose
nonfermenting 4		 0.64 0.31 -0.31
21 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 0.64 0.32 -0.31
22 AT1G79030 Chaperone DnaJ-domain superfamily protein 0.63 0.32 -0.31
23 AT1G62260 mitochondrial editing factor 9 mitochondrial editing factor 9 0.63 0.33 -0.32
24 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 -0.63 0.31 -0.33
25 AT1G12630 Integrase-type DNA-binding superfamily protein 0.63 0.31 -0.31
26 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.31 -0.32
27 AT3G62640 Protein of unknown function (DUF3511) 0.63 0.31 -0.3
28 AT1G35647 transposable element gene -0.63 0.3 -0.33
29 AT5G40340 Tudor/PWWP/MBT superfamily protein 0.62 0.3 -0.32
30 AT2G30730 Protein kinase superfamily protein -0.62 0.32 -0.31
31 AT5G62990 Ubiquitin carboxyl-terminal hydrolase family protein embryo defective 1692 0.62 0.31 -0.31
32 AT1G26820 ribonuclease 3 ribonuclease 3 -0.62 0.31 -0.33
33 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.32 -0.33
34 AT3G18650 AGAMOUS-like 103 AGAMOUS-like 103 0.62 0.32 -0.31
35 AT5G14470 GHMP kinase family protein -0.62 0.3 -0.31
36 AT5G57830 Protein of unknown function, DUF593 -0.61 0.32 -0.31
37 AT5G44970 Protein with RNI-like/FBD-like domains 0.61 0.31 -0.3
38 AT5G38610 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.61 0.31 -0.31
39 AT5G40600 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.61 0.32 -0.31
40 AT3G04150 RmlC-like cupins superfamily protein 0.61 0.31 -0.31
41 AT3G13720 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F3, PRA8 -0.61 0.31 -0.34
42 AT1G12720 transposable element gene 0.61 0.33 -0.3
43 AT4G39753 Galactose oxidase/kelch repeat superfamily protein -0.6 0.33 -0.31
44 AT5G26210 alfin-like 4 alfin-like 4 -0.6 0.32 -0.3
45 AT1G78720 SecY protein transport family protein 0.6 0.3 -0.31
46 AT1G26530 PIN domain-like family protein -0.6 0.32 -0.35
47 AT4G03950 Nucleotide/sugar transporter family protein 0.6 0.31 -0.31
48 AT4G32750 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.6 0.33 -0.34
49 AT5G39785 Protein of unknown function (DUF1666) 0.6 0.32 -0.3
50 AT1G40390 DNAse I-like superfamily protein 0.59 0.33 -0.32
51 AT4G11110 SPA1-related 2 SPA1-related 2 0.59 0.31 -0.32
52 AT3G55780 Glycosyl hydrolase superfamily protein 0.59 0.32 -0.31
53 AT5G32470 Haem oxygenase-like, multi-helical 0.59 0.31 -0.32
54 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain -0.59 0.34 -0.32
55 AT3G17590 transcription regulatory protein SNF5, putative (BSH) BUSHY GROWTH, CHE1 -0.59 0.31 -0.32
56 AT3G13280 Putative endonuclease or glycosyl hydrolase 0.59 0.31 -0.3
57 AT2G36410 Family of unknown function (DUF662) -0.59 0.31 -0.32
58 AT1G27410 DNA repair metallo-beta-lactamase family protein 0.59 0.33 -0.37
59 AT1G54790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.59 0.3 -0.32
60 AT5G09780 Transcriptional factor B3 family protein 0.59 0.32 -0.32
61 AT1G05740 Eukaryotic protein of unknown function (DUF842) -0.58 0.32 -0.29
62 AT1G59670 glutathione S-transferase TAU 15 glutathione S-transferase TAU 15,
glutathione S-transferase TAU 15		 -0.58 0.32 -0.29
63 AT3G42820 transposable element gene 0.58 0.31 -0.31
64 AT5G20770 transposable element gene 0.58 0.31 -0.34
65 AT5G54095 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis, C globular stage,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27580.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.58 0.32 -0.33
66 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.58 0.28 -0.34
67 AT2G30590 WRKY DNA-binding protein 21 WRKY DNA-binding protein 21 -0.58 0.31 -0.31
68 AT1G35570 transposable element gene 0.58 0.33 -0.32
69 AT4G14760 kinase interacting (KIP1-like) family protein 0.58 0.33 -0.31
70 AT1G56570 Tetratricopeptide repeat (TPR)-like superfamily protein PENTATRICOPEPTIDE REPEAT PROTEIN
FOR GERMINATION ON NaCl		 0.57 0.29 -0.3
71 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 0.57 0.3 -0.33
72 AT1G71760 unknown protein; Has 92 Blast hits to 92 proteins in 41
species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source:
NCBI BLink).		 -0.57 0.31 -0.3
73 AT1G07980 nuclear factor Y, subunit C10 nuclear factor Y, subunit C10 -0.57 0.31 -0.31
74 AT1G36940 unknown protein; Has 21 Blast hits to 21 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.31 -0.3
75 AT2G17660 RPM1-interacting protein 4 (RIN4) family protein -0.57 0.3 -0.31
76 AT3G58080 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.31 -0.33
77 AT4G10280 RmlC-like cupins superfamily protein -0.56 0.32 -0.31
78 AT5G57590 adenosylmethionine-8-amino-7-oxononanoate transaminases biotin auxotroph 1 -0.56 0.33 -0.31
79 AT3G50120 Plant protein of unknown function (DUF247) -0.56 0.3 -0.33
80 AT4G08450 Disease resistance protein (TIR-NBS-LRR class) family -0.55 0.31 -0.31
81 AT1G31760 SWIB/MDM2 domain superfamily protein -0.55 0.34 -0.33
82 AT2G18880 vernalization5/VIN3-like vernalization5/VIN3-like 2,
VIN3-like 3		 -0.54 0.3 -0.31
83 AT1G10020 Protein of unknown function (DUF1005) -0.54 0.33 -0.31
84 AT3G44760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root, flower; EXPRESSED
DURING: petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast hits to 9
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.54 0.29 -0.32
85 AT3G10180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.54 0.32 -0.29
86 AT3G45480 RING/U-box protein with C6HC-type zinc finger -0.53 0.32 -0.31
87 AT5G60630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: hydroxyproline-rich glycoprotein family protein
(TAIR:AT3G45230.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.53 0.29 -0.3
88 AT5G46200 Protein of Unknown Function (DUF239) -0.53 0.34 -0.32
89 AT1G48820 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.53 0.31 -0.29
90 AT4G13190 Protein kinase superfamily protein -0.52 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
91 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate -0.75 0.46 -0.44 C0136
92 C0029 3-Indolylacetonitrile - Indole-3-acetonitrile indole glucosinolate breakdown (insect chewing induced),
IAA biosynthesis I,
camalexin biosynthesis 		0.59 0.31 -0.33 C0029
93 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		0.58 0.31 -0.31 C0101