AT2G28450 : -
Query Information
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AGICode AT2G28450
Description zinc finger (CCCH-type) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G28450 zinc finger (CCCH-type) family protein 1 0.3 -0.35
2 AT1G10650 SBP (S-ribonuclease binding protein) family protein -0.81 0.32 -0.31
3 AT2G40360 Transducin/WD40 repeat-like superfamily protein 0.81 0.3 -0.32
4 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.8 0.31 -0.32
5 AT5G20600 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: preribosome, small subunit
precursor; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits
to 530 proteins in 201 species: Archae - 0; Bacteria - 10;
Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink).		 0.8 0.31 -0.32
6 AT1G06720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.3 -0.33
7 AT5G14520 pescadillo-related 0.79 0.31 -0.32
8 AT5G64420 DNA polymerase V family 0.78 0.29 -0.32
9 AT1G68660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 -0.78 0.3 -0.34
10 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE 0.78 0.32 -0.32
11 AT2G17250 CCAAT-binding factor EMBRYO DEFECTIVE 2762 0.78 0.34 -0.32
12 AT2G36930 zinc finger (C2H2 type) family protein 0.76 0.31 -0.32
13 AT3G59090 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana
protein match is: tobamovirus multiplication 1
(TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in
29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.76 0.32 -0.32
14 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.76 0.33 -0.32
15 AT3G11830 TCP-1/cpn60 chaperonin family protein 0.76 0.33 -0.33
16 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.75 0.32 -0.34
17 AT1G13090 cytochrome P450, family 71, subfamily B, polypeptide 28 cytochrome P450, family 71,
subfamily B, polypeptide 28		 -0.75 0.33 -0.32
18 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 0.75 0.32 -0.31
19 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein -0.74 0.34 -0.33
20 AT1G53200 unknown protein; Has 21 Blast hits to 21 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.74 0.3 -0.32
21 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.73 0.33 -0.32
22 AT1G79470 Aldolase-type TIM barrel family protein 0.73 0.3 -0.29
23 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.73 0.3 -0.3
24 AT3G11450 DnaJ domain ;Myb-like DNA-binding domain 0.72 0.31 -0.3
25 AT5G67150 HXXXD-type acyl-transferase family protein -0.72 0.32 -0.31
26 AT4G29220 phosphofructokinase 1 phosphofructokinase 1 -0.72 0.32 -0.31
27 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.71 0.31 -0.29
28 AT4G26070 MAP kinase/ ERK kinase 1 ATMEK1, MAP kinase/ ERK kinase 1,
MITOGEN ACTIVATED PROTEIN KINASE
KINASE 1, NMAPKK		 -0.71 0.31 -0.33
29 AT5G16990 Zinc-binding dehydrogenase family protein -0.71 0.3 -0.31
30 AT3G07750 3'-5'-exoribonuclease family protein 0.71 0.34 -0.32
31 AT3G07660 Kinase-related protein of unknown function (DUF1296) 0.71 0.32 -0.33
32 AT2G23780 RING/U-box superfamily protein -0.71 0.32 -0.31
33 AT3G15353 metallothionein 3 ATMT3, metallothionein 3 -0.71 0.32 -0.33
34 AT1G50580 UDP-Glycosyltransferase superfamily protein 0.71 0.31 -0.32
35 AT2G16570 GLN phosphoribosyl pyrophosphate amidotransferase 1 GLN phosphoribosyl pyrophosphate
amidotransferase 1, ATASE, GLN
phosphoribosyl pyrophosphate
amidotransferase 1		 0.71 0.29 -0.32
36 AT3G49580 response to low sulfur 1 RESPONSE TO LOW SULFUR 1 -0.7 0.3 -0.33
37 AT1G32070 nuclear shuttle interacting nuclear shuttle interacting,
nuclear shuttle interacting		 -0.7 0.32 -0.3
38 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 -0.7 0.29 -0.33
39 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 -0.7 0.33 -0.32
40 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.7 0.31 -0.32
41 AT1G77030 hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases		 0.7 0.31 -0.3
42 AT5G41960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 -0.7 0.33 -0.32
43 AT2G03550 alpha/beta-Hydrolases superfamily protein -0.7 0.3 -0.31
44 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.69 0.33 -0.3
45 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.32 -0.3
46 AT5G02240 NAD(P)-binding Rossmann-fold superfamily protein -0.69 0.32 -0.31
47 AT2G45740 peroxin 11D peroxin 11D -0.69 0.34 -0.33
48 AT3G04820 Pseudouridine synthase family protein 0.69 0.32 -0.3
49 AT5G12410 THUMP domain-containing protein 0.69 0.32 -0.31
50 AT1G69935 short hypocotyl in white light1 SHORT HYPOCOTYL IN WHITE LIGHT1 -0.69 0.31 -0.32
51 AT2G06040 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547
proteins in 240 species: Archae - 0; Bacteria - 125;
Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0;
Other Eukaryotes - 439 (source: NCBI BLink).		 0.69 0.33 -0.29
52 AT1G30880 unknown protein; Has 24 Blast hits to 24 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.3
53 AT3G26782 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.31 -0.29
54 AT5G02790 Glutathione S-transferase family protein Glutathione transferase L3 -0.68 0.31 -0.29
55 AT2G41500 WD-40 repeat family protein / small nuclear
ribonucleoprotein Prp4p-related		 EMB2776, LACHESIS 0.68 0.32 -0.3
56 AT1G09770 cell division cycle 5 ARABIDOPSIS THALIANA CELL DIVISION
CYCLE 5, ARABIDOPSIS THALIANA MYB
DOMAIN CELL DIVISION CYCLE 5, cell
division cycle 5		 0.68 0.32 -0.32
57 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 -0.68 0.31 -0.3
58 AT5G49230 Drought-responsive family protein HYPERSENSITIVE TO RED AND BLUE -0.68 0.3 -0.3
59 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 -0.68 0.32 -0.3
60 AT1G74500 activation-tagged BRI1(brassinosteroid-insensitive
1)-suppressor 1		 activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, TARGET OF
MONOPTEROS 7		 0.68 0.3 -0.31
61 AT1G76760 thioredoxin Y1 thioredoxin Y1, THIOREDOXIN Y1,
thioredoxin Y1		 0.67 0.32 -0.31
62 AT5G65390 arabinogalactan protein 7 arabinogalactan protein 7 0.67 0.32 -0.32
63 AT5G48850 Tetratricopeptide repeat (TPR)-like superfamily protein SULPHUR DEFICIENCY-INDUCED 1 -0.67 0.32 -0.31
64 AT1G30080 Glycosyl hydrolase superfamily protein 0.67 0.32 -0.29
65 AT4G01900 GLNB1 homolog GLNB1 homolog, PII -0.67 0.34 -0.34
66 AT1G26660 Prefoldin chaperone subunit family protein 0.67 0.29 -0.32
67 AT5G01160 RING/U-box superfamily protein 0.67 0.32 -0.31
68 AT3G43800 glutathione S-transferase tau 27 glutathione S-transferase tau 27,
glutathione S-transferase tau 27		 -0.67 0.3 -0.3
69 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 -0.67 0.31 -0.31
70 AT3G09250 Nuclear transport factor 2 (NTF2) family protein -0.67 0.3 -0.33
71 AT3G01140 myb domain protein 106 myb domain protein 106, myb domain
protein 106, NOECK		 -0.66 0.32 -0.32
72 AT3G58350 RESTRICTED TEV MOVEMENT 3 RESTRICTED TEV MOVEMENT 3 -0.66 0.32 -0.31
73 AT5G63530 farnesylated protein 3 ARABIDOPSIS THALIANA FARNESYLATED
PROTEIN 3, farnesylated protein 3		 -0.66 0.32 -0.32
74 AT1G69390 homologue of bacterial MinE 1 accumulation and replication of
chloroplasts 12, homologue of
bacterial MinE 1, homologue of
bacterial MinE 1		 -0.66 0.31 -0.34
75 AT1G78200 Protein phosphatase 2C family protein -0.66 0.32 -0.32
76 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.66 0.34 -0.31
77 AT4G22753 sterol 4-alpha methyl oxidase 1-3 ATSMO1-3, sterol 4-alpha methyl
oxidase 1-3		 -0.66 0.33 -0.33
78 AT5G38360 alpha/beta-Hydrolases superfamily protein -0.66 0.32 -0.3
79 AT4G30990 ARM repeat superfamily protein 0.66 0.31 -0.31
80 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.66 0.31 -0.31
81 AT2G43650 Sas10/U3 ribonucleoprotein (Utp) family protein EMBRYO DEFECTIVE 2777 0.65 0.32 -0.32
82 AT5G47680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA
(guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA
(guanine-N(1)-)-methyltransferase, metazoa
(InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase,
eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 AtTRM, tRNA modification 10 0.65 0.31 -0.31
83 AT1G77180 chromatin protein family SKIP 0.65 0.31 -0.35
84 AT4G18975 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.31 -0.33
85 AT5G45210 Disease resistance protein (TIR-NBS-LRR class) family 0.65 0.31 -0.31
86 AT1G78020 Protein of unknown function (DUF581) -0.65 0.33 -0.31
87 AT1G27690 Protein of unknown function (DUF620) -0.65 0.3 -0.31
88 AT2G27290 Protein of unknown function (DUF1279) -0.65 0.32 -0.31
89 AT4G18570 Tetratricopeptide repeat (TPR)-like superfamily protein -0.65 0.32 -0.32
90 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.64 0.31 -0.29
91 AT4G09340 SPla/RYanodine receptor (SPRY) domain-containing protein -0.64 0.31 -0.32
92 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 -0.64 0.31 -0.3
93 AT1G31812 acyl-CoA-binding protein 6 ACYL-COA-BINDING PROTEIN,
acyl-CoA-binding protein 6		 -0.64 0.35 -0.32
94 AT5G50160 ferric reduction oxidase 8 FERRIC REDUCTION OXIDASE 8, ferric
reduction oxidase 8		 -0.64 0.3 -0.32
95 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain
family protein		 -0.64 0.31 -0.32
96 AT5G23240 DNAJ heat shock N-terminal domain-containing protein -0.64 0.33 -0.3
97 AT3G01180 starch synthase 2 starch synthase 2, starch synthase
2		 -0.64 0.3 -0.32
98 AT2G19310 HSP20-like chaperones superfamily protein -0.63 0.31 -0.34
99 AT3G50440 methyl esterase 10 ARABIDOPSIS THALIANA METHYL
ESTERASE 10, methyl esterase 10		 -0.63 0.32 -0.31
100 AT3G45140 lipoxygenase 2 ARABIODOPSIS THALIANA LIPOXYGENASE
2, lipoxygenase 2		 -0.63 0.3 -0.32
101 AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase pyridoxin (pyrodoxamine)
5'-phosphate oxidase, HOMOLOG OF
YEAST PYRIDOXINE AUXOTROPHY 3,
pyridoxin (pyrodoxamine)
5'-phosphate oxidase		 -0.63 0.32 -0.33
102 AT2G33735 Chaperone DnaJ-domain superfamily protein -0.63 0.33 -0.3
103 AT5G24660 response to low sulfur 2 RESPONSE TO LOW SULFUR 2 -0.63 0.3 -0.32
104 AT1G52400 beta glucosidase 18 A. THALIANA BETA-GLUCOSIDASE 1,
BETA-GLUCOSIDASE HOMOLOG 1, beta
glucosidase 18		 -0.63 0.32 -0.28
105 AT3G56830 Protein of unknown function (DUF565) -0.63 0.32 -0.31
106 AT5G54660 HSP20-like chaperones superfamily protein -0.63 0.32 -0.32
107 AT4G26950 Protein of unknown function, DUF584 -0.63 0.33 -0.33
108 AT1G57870 shaggy-like kinase 42 shaggy-like kinase 42, shaggy-like
kinase 42		 -0.63 0.3 -0.31
109 AT1G03310 debranching enzyme 1 ARABIDOPSIS THALIANA ISOAMYLASE 2,
BRANCHING ENZYME 2, debranching
enzyme 1, ISA2		 -0.63 0.32 -0.32
110 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.62 0.32 -0.31
111 AT2G24790 CONSTANS-like 3 ATCOL3, CONSTANS-like 3 -0.62 0.33 -0.29
112 AT3G62800 double-stranded-RNA-binding protein 4 double-stranded-RNA-binding
protein 4		 -0.62 0.32 -0.32
113 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.62 0.31 -0.33
114 AT3G01510 like SEX4 1 like SEX4 1 -0.62 0.32 -0.31
115 AT1G05230 homeodomain GLABROUS 2 homeodomain GLABROUS 2 -0.62 0.31 -0.31
116 AT5G58330 lactate/malate dehydrogenase family protein -0.62 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0173 MST_2301.7 - - - 0.76 0.46 -0.46