AT2G20890 : photosystem II reaction center PSB29 protein
Query Information
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AGICode AT2G20890
Description photosystem II reaction center PSB29 protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 1 0.32 -0.32
2 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.94 0.33 -0.3
3 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.94 0.31 -0.33
4 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.94 0.33 -0.32
5 AT5G52970 thylakoid lumen 15.0 kDa protein 0.94 0.34 -0.31
6 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.93 0.31 -0.32
7 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.93 0.31 -0.31
8 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.93 0.33 -0.33
9 AT2G18710 SECY homolog 1 SECY homolog 1 0.93 0.28 -0.32
10 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.93 0.31 -0.32
11 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.93 0.3 -0.34
12 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.92 0.31 -0.31
13 AT5G65220 Ribosomal L29 family protein 0.92 0.31 -0.32
14 AT4G17740 Peptidase S41 family protein 0.92 0.32 -0.31
15 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.92 0.3 -0.3
16 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.92 0.32 -0.32
17 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.92 0.34 -0.32
18 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.92 0.31 -0.32
19 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.3 -0.3
20 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.92 0.34 -0.34
21 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.92 0.3 -0.32
22 AT3G54210 Ribosomal protein L17 family protein 0.91 0.31 -0.32
23 AT1G03600 photosystem II family protein PSB27 0.91 0.33 -0.3
24 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.91 0.32 -0.32
25 AT2G33450 Ribosomal L28 family 0.91 0.3 -0.33
26 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.91 0.32 -0.32
27 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.91 0.32 -0.32
28 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.91 0.31 -0.32
29 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.91 0.33 -0.32
30 AT3G29185 Domain of unknown function (DUF3598) 0.91 0.31 -0.31
31 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.91 0.3 -0.32
32 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.91 0.3 -0.33
33 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.91 0.32 -0.29
34 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.91 0.32 -0.32
35 AT1G06680 photosystem II subunit P-1 OXYGEN EVOLVING COMPLEX SUBUNIT 23
KDA, OXYGEN-EVOLVING ENHANCER
PROTEIN 2, photosystem II subunit
P-1, PHOTOSYSTEM II SUBUNIT P		 0.91 0.31 -0.32
36 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.91 0.3 -0.33
37 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.91 0.33 -0.29
38 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.91 0.32 -0.32
39 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.91 0.3 -0.31
40 AT1G53520 Chalcone-flavanone isomerase family protein 0.91 0.32 -0.34
41 AT3G13120 Ribosomal protein S10p/S20e family protein 0.91 0.32 -0.32
42 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.3 -0.34
43 AT2G43030 Ribosomal protein L3 family protein 0.91 0.32 -0.32
44 AT3G20230 Ribosomal L18p/L5e family protein 0.91 0.3 -0.31
45 AT1G11860 Glycine cleavage T-protein family 0.91 0.33 -0.32
46 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.91 0.32 -0.33
47 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.31 -0.29
48 AT5G46420 16S rRNA processing protein RimM family 0.91 0.32 -0.31
49 AT3G55040 glutathione transferase lambda 2 glutathione transferase lambda 2 0.9 0.33 -0.3
50 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.9 0.32 -0.32
51 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38		 0.9 0.32 -0.31
52 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.9 0.34 -0.31
53 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.9 0.33 -0.34
54 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.9 0.33 -0.32
55 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.9 0.32 -0.3
56 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.9 0.32 -0.34
57 AT4G26370 antitermination NusB domain-containing protein 0.9 0.32 -0.3
58 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.9 0.31 -0.32
59 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.9 0.31 -0.33
60 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.9 0.32 -0.31
61 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.9 0.31 -0.32
62 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.9 0.33 -0.29
63 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.9 0.33 -0.31
64 AT1G14270 CAAX amino terminal protease family protein 0.9 0.33 -0.32
65 AT1G29070 Ribosomal protein L34 0.9 0.32 -0.31
66 AT5G42070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.9 0.29 -0.36
67 AT2G24090 Ribosomal protein L35 0.9 0.31 -0.33
68 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.9 0.32 -0.31
69 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.9 0.31 -0.32
70 AT5G57030 Lycopene beta/epsilon cyclase protein LUTEIN DEFICIENT 2 0.9 0.3 -0.31
71 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.9 0.33 -0.3
72 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.9 0.32 -0.31
73 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.9 0.33 -0.3
74 AT1G76450 Photosystem II reaction center PsbP family protein 0.89 0.32 -0.32
75 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.89 0.3 -0.32
76 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.89 0.32 -0.31
77 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.89 0.32 -0.31
78 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.31 -0.33
79 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein AtPLR1, pyridoxal reductase 1 0.89 0.31 -0.31
80 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.33 -0.32
81 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.89 0.32 -0.3
82 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.89 0.31 -0.32
83 AT3G23700 Nucleic acid-binding proteins superfamily 0.89 0.29 -0.31
84 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.89 0.32 -0.33
85 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.89 0.34 -0.34
86 AT2G28605 Photosystem II reaction center PsbP family protein 0.89 0.33 -0.33
87 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.29 -0.3
88 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.31 -0.32
89 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.89 0.31 -0.32
90 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.89 0.32 -0.28
91 AT5G66570 PS II oxygen-evolving complex 1 MANGANESE-STABILIZING PROTEIN 1,
OXYGEN EVOLVING COMPLEX 33
KILODALTON PROTEIN, 33 KDA OXYGEN
EVOLVING POLYPEPTIDE 1, OXYGEN
EVOLVING ENHANCER PROTEIN 33, PS
II OXYGEN-EVOLVING COMPLEX 1, PS
II oxygen-evolving complex 1		 0.89 0.32 -0.31
92 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.89 0.31 -0.31
93 AT1G64680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits
to 146 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.89 0.32 -0.34
94 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.89 0.32 -0.32
95 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.31 -0.32
96 AT2G06520 photosystem II subunit X photosystem II subunit X 0.89 0.31 -0.31
97 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.89 0.3 -0.31
98 AT1G14030 Rubisco methyltransferase family protein 0.89 0.32 -0.32
99 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.89 0.32 -0.33
100 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.88 0.31 -0.32
101 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.88 0.31 -0.29
102 AT1G08380 photosystem I subunit O photosystem I subunit O 0.88 0.34 -0.33
103 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.88 0.31 -0.31
104 AT1G30380 photosystem I subunit K photosystem I subunit K 0.88 0.33 -0.32
105 AT1G54780 thylakoid lumen 18.3 kDa protein AtTLP18.3, thylakoid lumen protein
18.3		 0.88 0.32 -0.31
106 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.88 0.3 -0.33
107 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.88 0.32 -0.33
108 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.88 0.32 -0.29
109 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 0.88 0.34 -0.32
110 AT3G56940 dicarboxylate diiron protein, putative (Crd1) ACSF, CHL27, COPPER RESPONSE
DEFECT 1		 0.88 0.31 -0.34
111 AT1G10740 alpha/beta-Hydrolases superfamily protein 0.88 0.33 -0.32
112 AT1G49380 cytochrome c biogenesis protein family 0.88 0.33 -0.31
113 AT5G63050 embryo defective 2759 embryo defective 2759 0.88 0.32 -0.31
114 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.88 0.31 -0.32
115 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.88 0.32 -0.31
116 AT3G25290 Auxin-responsive family protein -0.85 0.33 -0.3
117 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.83 0.31 -0.32
118 AT3G09270 glutathione S-transferase TAU 8 glutathione S-transferase TAU 8,
glutathione S-transferase TAU 8		 -0.81 0.29 -0.32
119 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.81 0.3 -0.33
120 AT5G10820 Major facilitator superfamily protein -0.8 0.32 -0.32
121 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.79 0.3 -0.33
122 AT2G17500 Auxin efflux carrier family protein -0.78 0.31 -0.33
123 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.77 0.32 -0.3
124 AT5G06750 Protein phosphatase 2C family protein -0.77 0.31 -0.31
125 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.76 0.33 -0.31
126 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.76 0.3 -0.34
127 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.76 0.32 -0.31
128 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.76 0.32 -0.31
129 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.75 0.33 -0.33
130 AT4G29690 Alkaline-phosphatase-like family protein -0.75 0.28 -0.31
131 AT5G35200 ENTH/ANTH/VHS superfamily protein -0.74 0.33 -0.3
132 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.74 0.31 -0.3
133 AT1G32170 xyloglucan endotransglucosylase/hydrolase 30 xyloglucan
endotransglucosylase/hydrolase 30,
xyloglucan endotransglycosylase 4		 -0.74 0.32 -0.3
134 AT4G20860 FAD-binding Berberine family protein -0.74 0.31 -0.3
135 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.74 0.29 -0.31
136 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.31 -0.31
137 AT5G10830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.3 -0.32
138 AT3G48850 phosphate transporter 3;2 phosphate transporter 3;2 -0.72 0.29 -0.32
139 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 -0.71 0.32 -0.32
140 AT3G49780 phytosulfokine 4 precursor ATPSK3 (FORMER SYMBOL),
phytosulfokine 4 precursor,
phytosulfokine 4 precursor		 -0.71 0.33 -0.29
141 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.71 0.31 -0.3
142 AT3G25250 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 AGC2, AGC2-1, AtOXI1, oxidative
signal-inducible1		 -0.71 0.33 -0.3
143 AT4G37410 cytochrome P450, family 81, subfamily F, polypeptide 4 cytochrome P450, family 81,
subfamily F, polypeptide 4		 -0.7 0.31 -0.31
144 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.7 0.32 -0.36
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
145 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.81 0.42 -0.43 C0051
146 C0135 Kaempferol-hexosyl-dirhamnoside - - - -0.75 0.46 -0.45