AT2G37220 : -
Query Information
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AGICode AT2G37220
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.3 -0.29
2 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.94 0.31 -0.34
3 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.93 0.32 -0.31
4 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.93 0.33 -0.29
5 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.92 0.32 -0.29
6 AT4G26370 antitermination NusB domain-containing protein 0.92 0.31 -0.3
7 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.92 0.29 -0.32
8 AT4G37510 Ribonuclease III family protein 0.92 0.34 -0.3
9 AT1G06190 Rho termination factor 0.91 0.34 -0.34
10 AT3G54210 Ribosomal protein L17 family protein 0.91 0.3 -0.31
11 AT2G33450 Ribosomal L28 family 0.91 0.3 -0.3
12 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.91 0.29 -0.32
13 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.3 -0.31
14 AT2G43030 Ribosomal protein L3 family protein 0.91 0.32 -0.34
15 AT5G65220 Ribosomal L29 family protein 0.9 0.31 -0.3
16 AT3G12930 Lojap-related protein 0.9 0.31 -0.3
17 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.9 0.31 -0.33
18 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.9 0.32 -0.31
19 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.9 0.32 -0.33
20 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.9 0.34 -0.29
21 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.3 -0.32
22 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.9 0.3 -0.32
23 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.9 0.33 -0.32
24 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.9 0.32 -0.31
25 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.31 -0.29
26 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.89 0.32 -0.31
27 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.89 0.33 -0.33
28 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.89 0.34 -0.31
29 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.89 0.31 -0.32
30 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.89 0.31 -0.3
31 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.89 0.33 -0.34
32 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.89 0.33 -0.31
33 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.89 0.33 -0.3
34 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.89 0.34 -0.34
35 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.31 -0.31
36 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.33 -0.32
37 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.89 0.32 -0.3
38 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.89 0.33 -0.31
39 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.89 0.32 -0.32
40 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.89 0.32 -0.31
41 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.89 0.32 -0.32
42 AT4G34290 SWIB/MDM2 domain superfamily protein 0.88 0.29 -0.3
43 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.88 0.34 -0.32
44 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.88 0.33 -0.3
45 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.88 0.31 -0.32
46 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.32 -0.31
47 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.88 0.31 -0.31
48 AT3G23700 Nucleic acid-binding proteins superfamily 0.88 0.3 -0.3
49 AT2G39670 Radical SAM superfamily protein 0.88 0.31 -0.31
50 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.88 0.32 -0.29
51 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.32 -0.33
52 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.3 -0.32
53 AT5G63050 embryo defective 2759 embryo defective 2759 0.88 0.32 -0.32
54 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.3 -0.31
55 AT2G24090 Ribosomal protein L35 0.88 0.33 -0.3
56 AT5G54600 Translation protein SH3-like family protein 0.88 0.31 -0.31
57 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.32 -0.32
58 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.88 0.32 -0.32
59 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.88 0.31 -0.33
60 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.87 0.29 -0.33
61 AT5G59500 protein C-terminal S-isoprenylcysteine carboxyl
O-methyltransferases		 0.87 0.3 -0.31
62 AT3G15360 thioredoxin M-type 4 ATHM4, ARABIDOPSIS THIOREDOXIN
M-TYPE 4, thioredoxin M-type 4		 0.87 0.34 -0.31
63 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.87 0.27 -0.32
64 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.87 0.33 -0.32
65 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.87 0.3 -0.3
66 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.87 0.29 -0.31
67 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.87 0.31 -0.31
68 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.87 0.32 -0.32
69 AT5G66530 Galactose mutarotase-like superfamily protein 0.87 0.32 -0.31
70 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.87 0.3 -0.34
71 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.87 0.3 -0.34
72 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.87 0.32 -0.32
73 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.87 0.3 -0.29
74 AT5G55710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised
conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 translocon at the inner envelope
membrane of chloroplasts 20-V,
translocon at the inner envelope
membrane of chloroplasts 20-V		 0.86 0.31 -0.31
75 AT5G48220 Aldolase-type TIM barrel family protein 0.86 0.34 -0.31
76 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.86 0.3 -0.34
77 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.86 0.31 -0.32
78 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.86 0.3 -0.33
79 AT2G28605 Photosystem II reaction center PsbP family protein 0.86 0.33 -0.31
80 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.86 0.32 -0.3
81 AT1G70730 Phosphoglucomutase/phosphomannomutase family protein phosphoglucomutase 2 0.86 0.33 -0.31
82 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.86 0.33 -0.3
83 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.86 0.32 -0.31
84 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.86 0.33 -0.3
85 AT5G55580 Mitochondrial transcription termination factor family
protein		 0.86 0.33 -0.32
86 AT5G17840 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.86 0.32 -0.29
87 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.86 0.32 -0.32
88 AT3G25290 Auxin-responsive family protein -0.83 0.33 -0.33
89 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.81 0.34 -0.3
90 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.79 0.3 -0.32
91 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.78 0.32 -0.32
92 AT2G48010 receptor-like kinase in in flowers 3 receptor-like kinase in in flowers
3		 -0.78 0.32 -0.32
93 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.78 0.33 -0.29
94 AT5G38710 Methylenetetrahydrofolate reductase family protein -0.78 0.3 -0.33
95 AT2G17500 Auxin efflux carrier family protein -0.76 0.32 -0.31
96 AT1G06620 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.76 0.32 -0.32
97 AT5G02170 Transmembrane amino acid transporter family protein -0.76 0.34 -0.31
98 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein -0.74 0.31 -0.3
99 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.74 0.31 -0.31
100 AT1G28480 Thioredoxin superfamily protein GRX480, roxy19 -0.74 0.33 -0.3
101 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.73 0.32 -0.3
102 AT2G17520 Endoribonuclease/protein kinase IRE1-like ARABIDOPSIS THALIANA INOSITOL
REQUIRING 1-2, INOSITOL REQUIRING
1-2, IRE1A		 -0.73 0.3 -0.3
103 AT4G29690 Alkaline-phosphatase-like family protein -0.73 0.32 -0.32
104 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.73 0.33 -0.32
105 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.73 0.32 -0.32
106 AT2G22330 cytochrome P450, family 79, subfamily B, polypeptide 3 cytochrome P450, family 79,
subfamily B, polypeptide 3		 -0.73 0.32 -0.33
107 AT1G62660 Glycosyl hydrolases family 32 protein -0.72 0.32 -0.31
108 AT4G22610 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.72 0.34 -0.32
109 AT3G50280 HXXXD-type acyl-transferase family protein -0.72 0.32 -0.29
110 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.71 0.31 -0.31
111 AT5G10830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.7 0.32 -0.32
112 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.7 0.31 -0.33
113 AT5G38020 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.7 0.32 -0.31
114 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.7 0.33 -0.3
115 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.7 0.31 -0.31
116 AT2G27310 F-box family protein -0.69 0.3 -0.31
117 AT5G48010 thalianol synthase 1 Arabidopsis thaliana thalianol
synthase 1, THALIANOL SYNTHASE,
thalianol synthase 1		 -0.69 0.3 -0.31
118 AT1G14120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.3 -0.32
119 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.68 0.34 -0.31
120 AT4G39030 MATE efflux family protein ENHANCED DISEASE SUSCEPTIBILITY 5,
susceptible to
coronatine-deficient Pst DC3000 3,
SALICYLIC ACID INDUCTION DEFICIENT
1		 -0.68 0.3 -0.32
121 AT1G24440 RING/U-box superfamily protein -0.68 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.81 0.45 -0.45 C0051