AT2G12300 : -
Query Information
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AGICode AT2G12300
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G12300 transposable element gene 1 0.31 -0.3
2 AT1G18130 Class II aaRS and biotin synthetases superfamily protein -0.72 0.29 -0.31
3 AT5G51480 SKU5 similar 2 SKU5 similar 2 -0.7 0.3 -0.29
4 AT1G26710 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26720.1); Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.7 0.31 -0.31
5 AT1G70630 Nucleotide-diphospho-sugar transferase family protein -0.69 0.32 -0.31
6 AT5G01960 RING/U-box superfamily protein -0.69 0.33 -0.33
7 AT3G63460 transducin family protein / WD-40 repeat family protein -0.68 0.34 -0.32
8 AT4G28010 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.32 -0.33
9 AT1G17730 vacuolar protein sorting 46.1 CHARGED MULTIVESICULAR BODY
PROTEIN/CHROMATIN MODIFYING
PROTEIN1B, vacuolar protein
sorting 46.1		 -0.67 0.31 -0.31
10 AT2G19410 U-box domain-containing protein kinase family protein -0.66 0.31 -0.32
11 AT1G72390 CONTAINS InterPro DOMAIN/s: Spt20 family
(InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins
in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198;
Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes
- 1797 (source: NCBI BLink).		 -0.66 0.31 -0.3
12 AT1G25270 nodulin MtN21 /EamA-like transporter family protein 0.66 0.3 -0.33
13 AT5G20880 transposable element gene -0.65 0.32 -0.34
14 ATMG00110 cytochrome C biogenesis 206 ATP-binding cassette I2,
cytochrome C biogenesis 206		 -0.65 0.32 -0.31
15 AT1G60430 actin-related protein C3 actin-related protein C3 -0.65 0.31 -0.33
16 AT2G15360 BEST Arabidopsis thaliana protein match is:
fucosyltransferase 4 (TAIR:AT2G15390.2); Has 38 Blast hits
to 35 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.33 -0.29
17 AT5G24880 BEST Arabidopsis thaliana protein match is:
calmodulin-binding protein-related (TAIR:AT5G10660.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.65 0.32 -0.3
18 AT3G15060 RAB GTPase homolog A1G RAB GTPase homolog A1G, RAB GTPase
homolog A1G		 -0.65 0.32 -0.32
19 AT1G22130 AGAMOUS-like 104 AGAMOUS-like 104 -0.65 0.31 -0.32
20 AT1G30100 nine-cis-epoxycarotenoid dioxygenase 5 NINE-CIS-EPOXYCAROTENOID
DIOXYGENASE 5,
nine-cis-epoxycarotenoid
dioxygenase 5		 0.65 0.32 -0.3
21 ATMG00840 hypothetical protein ORF121B -0.64 0.29 -0.32
22 AT4G14490 SMAD/FHA domain-containing protein 0.64 0.33 -0.33
23 AT1G10390 Nucleoporin autopeptidase -0.64 0.33 -0.29
24 AT3G43750 RING/U-box protein with C6HC-type zinc finger domain -0.64 0.32 -0.3
25 AT5G60310 Concanavalin A-like lectin protein kinase family protein 0.64 0.31 -0.31
26 AT3G21850 SKP1-like 9 SKP1-like 9, SKP1-like 9 0.64 0.32 -0.32
27 AT4G16680 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.31 -0.32
28 AT1G50090 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 -0.63 0.33 -0.3
29 AT1G50970 Membrane trafficking VPS53 family protein 0.63 0.3 -0.35
30 AT5G66140 proteasome alpha subunit D2 proteasome alpha subunit D2 -0.63 0.31 -0.31
31 AT1G19060 Protein of unknown function (DUF626) 0.63 0.32 -0.31
32 AT1G72460 Leucine-rich repeat protein kinase family protein -0.63 0.31 -0.32
33 AT5G38950 RmlC-like cupins superfamily protein 0.63 0.31 -0.31
34 AT4G32950 Protein phosphatase 2C family protein -0.63 0.34 -0.3
35 AT4G32290 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.63 0.32 -0.31
36 AT3G17900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 45
Blast hits to 44 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.63 0.31 -0.32
37 AT3G45830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in
100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi
- 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131
(source: NCBI BLink).		 -0.63 0.31 -0.3
38 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein -0.62 0.31 -0.3
39 AT3G60790 F-box family protein 0.62 0.31 -0.31
40 AT1G33000 transposable element gene 0.62 0.33 -0.31
41 AT2G29410 metal tolerance protein B1 ATMTPB1, metal tolerance protein
B1		 -0.62 0.33 -0.32
42 AT5G58910 laccase 16 laccase 16 -0.62 0.32 -0.33
43 AT1G36640 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell, root; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G36622.1); Has 14 Blast hits to 14 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.32
44 AT1G11990 O-fucosyltransferase family protein 0.62 0.32 -0.31
45 AT1G28030 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.3 -0.32
46 AT5G56340 RING/U-box superfamily protein ATCRT1 -0.62 0.31 -0.32
47 AT5G24710 Transducin/WD40 repeat-like superfamily protein -0.62 0.31 -0.34
48 AT1G77890 DNA-directed RNA polymerase II protein -0.62 0.33 -0.33
49 AT3G16060 ATP binding microtubule motor family protein 0.62 0.3 -0.3
50 AT4G14180 putative recombination initiation defect 1 putative recombination initiation
defect 1, putative recombination
initiation defect 1		 0.61 0.3 -0.32
51 AT4G19570 Chaperone DnaJ-domain superfamily protein 0.61 0.32 -0.33
52 AT1G31540 Disease resistance protein (TIR-NBS-LRR class) family -0.61 0.31 -0.31
53 AT1G63070 pentatricopeptide (PPR) repeat-containing protein -0.61 0.28 -0.31
54 AT1G18950 DDT domain superfamily -0.61 0.31 -0.31
55 AT5G05150 autophagy-related gene 18E ARABIDOPSIS THALIANA HOMOLOG OF
YEAST AUTOPHAGY 18E,
autophagy-related gene 18E,
autophagy-related gene 18E		 -0.61 0.33 -0.31
56 AT1G59510 Carbohydrate-binding protein CF9 -0.6 0.3 -0.31
57 AT1G72290 Kunitz family trypsin and protease inhibitor protein 0.6 0.32 -0.32
58 AT3G61940 Cation efflux family protein ATMTPA1, MTPA1 0.6 0.31 -0.32
59 AT3G10100 transposable element gene 0.6 0.31 -0.31
60 AT1G04380 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.6 0.31 -0.3
61 AT4G21160 Calcium-dependent ARF-type GTPase activating protein family ARF-GAP domain 12, ZAC -0.6 0.32 -0.32
62 AT1G08510 fatty acyl-ACP thioesterases B fatty acyl-ACP thioesterases B -0.6 0.31 -0.31
63 AT2G15900 Phox-associated domain;Phox-like;Sorting nexin, C-terminal -0.6 0.33 -0.32
64 AT2G18915 LOV KELCH protein 2 ADAGIO 2, LOV KELCH protein 2 -0.59 0.31 -0.33
65 AT5G06040 self-incompatibility protein-related -0.59 0.31 -0.31
66 AT2G13680 callose synthase 5 ARABIDOPSIS THALIANA GLUCAN
SYNTHASE-LIKE 2, callose synthase
5, GLUCAN SYNTHASE-LIKE 2		 0.59 0.31 -0.3
67 AT3G25560 NSP-interacting kinase 2 NSP-interacting kinase 2 0.59 0.32 -0.31
68 AT5G41620 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast, plasma
membrane; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: intracellular protein transport protein
USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.59 0.3 -0.32
69 AT4G03760 transposable element gene -0.59 0.32 -0.3
70 AT3G25490 Protein kinase family protein 0.59 0.32 -0.3
71 AT1G66150 transmembrane kinase 1 transmembrane kinase 1 -0.59 0.34 -0.29
72 AT1G51170 Protein kinase superfamily protein 0.59 0.32 -0.32
73 AT2G29600 Galactose oxidase/kelch repeat superfamily protein -0.59 0.32 -0.31
74 AT3G12160 RAB GTPase homolog A4D ARABIDOPSIS THALIANA RAB GTPASE
HOMOLOG A4D, RAB GTPase homolog
A4D		 0.59 0.31 -0.31
75 AT4G05340 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.59 0.32 -0.29
76 AT2G38480 Uncharacterised protein family (UPF0497) -0.59 0.32 -0.33
77 AT1G69660 TRAF-like family protein -0.59 0.3 -0.3
78 AT2G17430 Seven transmembrane MLO family protein ATMLO7, MILDEW RESISTANCE LOCUS O
7, NORTIA		 0.59 0.32 -0.33
79 AT3G05280 Integral membrane Yip1 family protein -0.59 0.31 -0.3
80 AT1G33900 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.59 0.32 -0.33
81 AT3G56380 response regulator 17 response regulator 17, response
regulator 17		 0.59 0.32 -0.31
82 AT3G12020 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.58 0.34 -0.31
83 AT1G75160 Protein of unknown function (DUF620) -0.58 0.32 -0.32
84 AT5G55900 Sucrase/ferredoxin-like family protein 0.58 0.31 -0.3
85 AT1G65210 Galactose-binding protein -0.58 0.33 -0.32
86 AT5G38160 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.58 0.32 -0.35
87 AT4G03570 Cystatin/monellin superfamily protein 0.58 0.32 -0.31
88 AT5G37380 Chaperone DnaJ-domain superfamily protein -0.58 0.31 -0.33
89 AT1G16980 trehalose-phosphatase/synthase 2 trehalose-phosphatase/synthase 2,
TREHALOSE -6-PHOSPHATASE SYNTHASE
S2, trehalose-phosphatase/synthase
2		 0.58 0.34 -0.31
90 AT5G33350 pseudogene, similar to P0406H10.5, nucleoid DNA-binding
protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996;
blastp match of 37% identity and 1.5e-57 P-value to
GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza
sativa (japonica cultivar-group)}		 0.58 0.3 -0.29
91 AT3G23750 Leucine-rich repeat protein kinase family protein -0.58 0.32 -0.33
92 AT5G14870 cyclic nucleotide-gated channel 18 CYCLIC NUCLEOTIDE-GATED CHANNEL
18, cyclic nucleotide-gated
channel 18		 -0.58 0.32 -0.29
93 AT3G10760 Homeodomain-like superfamily protein -0.58 0.32 -0.35
94 AT5G01690 cation/H+ exchanger 27 ARABIDOPSIS THALIANA
CATION/HYDROGEN EXCHANGER 27,
cation/H+ exchanger 27		 -0.58 0.31 -0.31
95 AT3G13520 arabinogalactan protein 12 arabinogalactan protein 12,
ATAGP12		 -0.58 0.3 -0.29
96 AT4G27550 trehalose-6-phosphatase synthase S4 ARABIDOPSIS THALIANA TREHALOSE
PHOSPHATASE/SYNTHASE 4,
trehalose-6-phosphatase synthase
S4		 0.58 0.31 -0.31
97 AT1G28375 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: petal, leaf whorl,
sepal, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.57 0.31 -0.32
98 AT5G08200 peptidoglycan-binding LysM domain-containing protein -0.57 0.31 -0.32
99 AT3G56850 ABA-responsive element binding protein 3 ABA-responsive element binding
protein 3, DPBF3		 -0.57 0.31 -0.31
100 AT4G13800 Protein of unknown function (DUF803) -0.57 0.31 -0.31
101 AT5G20700 Protein of unknown function (DUF581) 0.57 0.32 -0.31
102 AT3G30843 transposable element gene -0.57 0.32 -0.31
103 AT1G75910 extracellular lipase 4 extracellular lipase 4 0.57 0.34 -0.33
104 AT5G02650 BEST Arabidopsis thaliana protein match is: Telomerase
activating protein Est1 (TAIR:AT1G28260.2); Has 20 Blast
hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.32 -0.31
105 AT3G45510 RING/U-box protein -0.57 0.31 -0.34
106 AT3G30845 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.3 -0.34
107 AT1G60970 SNARE-like superfamily protein 0.56 0.31 -0.32
108 AT1G63990 sporulation 11-2 sporulation 11-2 0.56 0.31 -0.3
109 AT4G37770 1-amino-cyclopropane-1-carboxylate synthase 8 1-amino-cyclopropane-1-carboxylate
synthase 8		 0.56 0.3 -0.32
110 AT4G18395 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.55 0.35 -0.31
111 AT1G44740 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: embryo, leaf whorl, flower,
seed; EXPRESSED DURING: F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 8 Blast hits to 7 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
1; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.55 0.32 -0.34
112 AT3G47950 H(+)-ATPase 4 H(+)-ATPase 4, H(+)-ATPase 4 0.55 0.31 -0.34
113 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 0.54 0.32 -0.29
114 AT1G73440 calmodulin-related 0.54 0.33 -0.3
115 AT1G34400 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.53 0.31 -0.33
116 AT5G40460 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits
to 87 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.53 0.33 -0.33
117 AT1G06225 CLAVATA3/ESR-RELATED 3 CLAVATA3/ESR-RELATED 3 0.53 0.31 -0.33
118 AT4G17790 SNARE associated Golgi protein family 0.53 0.31 -0.31
119 AT4G39180 Sec14p-like phosphatidylinositol transfer family protein ARABIDOPSIS THALIANA SECRETION 14,
SECRETION 14		 0.53 0.34 -0.32
120 AT2G05820 transposable element gene 0.52 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
121 C0207 Phosphatidylglycerol-34:5 - - - -0.71 0.44 -0.47
122 C0215 PR_MST_2527.1 - - - -0.64 0.46 -0.44