AT2G39080 : EMBRYO DEFECTIVE 2799
Query Information
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AGICode AT2G39080
Description NAD(P)-binding Rossmann-fold superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 1 0.34 -0.29
2 AT3G09150 phytochromobilin:ferredoxin oxidoreductase, chloroplast /
phytochromobilin synthase (HY2)		 ARABIDOPSIS ELONGATED HYPOCOTYL 2,
GENOMES UNCOUPLED 3, ELONGATED
HYPOCOTYL 2		 0.88 0.33 -0.31
3 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.86 0.34 -0.31
4 AT2G20270 Thioredoxin superfamily protein 0.85 0.31 -0.31
5 AT2G26540 uroporphyrinogen-III synthase family protein DOMAIN OF UNKNOWN FUNCTION 724 3,
ARABIDOPSIS THALIANA
UROPORPHYRINOGEN III SYNTHASE,
DOMAIN OF UNKNOWN FUNCTION 724 3,
HEMD, UROPORPHYRINOGEN III
SYNTHASE		 0.84 0.3 -0.34
6 AT4G33350 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-IV,
translocon at the inner envelope
membrane of chloroplasts 22-IV		 0.84 0.32 -0.3
7 AT5G16660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, membrane,
chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.84 0.31 -0.32
8 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 0.82 0.34 -0.31
9 AT2G43750 O-acetylserine (thiol) lyase B ARABIDOPSIS CYSTEINE SYNTHASE 1,
ARABIDOPSIS THALIANA CYSTEIN
SYNTHASE-B, CHLOROPLAST
O-ACETYLSERINE SULFHYDRYLASE 1,
O-acetylserine (thiol) lyase B		 0.79 0.32 -0.32
10 AT3G01850 Aldolase-type TIM barrel family protein 0.79 0.31 -0.32
11 AT2G26670 Plant haem oxygenase (decyclizing) family protein ARABIDOPSIS THALIANA HEME
OXYGENASE 1, GENOMES UNCOUPLED 2,
HEME OXYGENASE 1, HEME OXYGENASE
1, HEME OXYGENASE 6, REVERSAL OF
THE DET PHENOTYPE 4		 0.78 0.33 -0.31
12 AT3G44620 protein tyrosine phosphatases;protein tyrosine phosphatases 0.78 0.34 -0.31
13 AT2G19940 oxidoreductases, acting on the aldehyde or oxo group of
donors, NAD or NADP as acceptor;copper ion binding		 0.77 0.3 -0.33
14 AT1G11750 CLP protease proteolytic subunit 6 CLP protease proteolytic subunit
6, NUCLEAR-ENCODED CLPP 1, NCLPP6		 0.77 0.32 -0.33
15 AT4G29670 atypical CYS HIS rich thioredoxin 2 atypical CYS HIS rich thioredoxin
2		 0.76 0.32 -0.32
16 AT1G09130 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.76 0.32 -0.32
17 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 0.76 0.33 -0.32
18 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 0.76 0.32 -0.33
19 AT4G11980 nudix hydrolase homolog 14 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 14, nudix
hydrolase homolog 14, nudix
hydrolase homolog 14		 0.75 0.31 -0.31
20 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.32 -0.3
21 AT1G78140 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.74 0.33 -0.31
22 AT1G08490 chloroplastic NIFS-like cysteine desulfurase ATCPNIFS, ATNFS2, ATSUFS,
chloroplastic NIFS-like cysteine
desulfurase, SUFS		 0.74 0.32 -0.31
23 AT5G06580 FAD-linked oxidases family protein 0.74 0.31 -0.3
24 AT2G05830 NagB/RpiA/CoA transferase-like superfamily protein 0.74 0.32 -0.33
25 AT1G12410 CLP protease proteolytic subunit 2 CLP protease proteolytic subunit
2, CLPR2, EMBRYO DEFECTIVE 3146,
NUCLEAR-ENCODED CLP PROTEASE P2		 0.74 0.33 -0.31
26 AT3G24160 putative type 1 membrane protein putative type 1 membrane protein 0.73 0.3 -0.31
27 AT3G62820 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.73 0.3 -0.32
28 AT1G52510 alpha/beta-Hydrolases superfamily protein 0.73 0.29 -0.33
29 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.72 0.31 -0.35
30 AT5G50860 Protein kinase superfamily protein 0.72 0.3 -0.31
31 AT5G41480 Folylpolyglutamate synthetase family protein A. THALIANA DHFS-FPGS HOMOLOG A,
DHFS-FPGS HOMOLOG A, EMBRYO
DEFECTIVE 9, GLOBULAR ARREST1		 0.72 0.3 -0.3
32 AT2G46580 Pyridoxamine 5'-phosphate oxidase family protein 0.72 0.32 -0.31
33 AT3G54860 Sec1/munc18-like (SM) proteins superfamily ATVPS33, VACUOLAR PROTEIN SORTING
33		 0.71 0.3 -0.31
34 AT3G10670 non-intrinsic ABC protein 7 ATP-binding cassette I6,
non-intrinsic ABC protein 7,
non-intrinsic ABC protein 7		 0.71 0.3 -0.31
35 AT1G22520 Domain of unknown function (DUF543) 0.7 0.32 -0.3
36 AT3G56460 GroES-like zinc-binding alcohol dehydrogenase family
protein		 0.7 0.32 -0.31
37 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 0.7 0.32 -0.32
38 AT4G25700 beta-hydroxylase 1 B1, BETA CAROTENOID HYDROXYLASE 1,
beta-hydroxylase 1, chy1		 0.7 0.3 -0.3
39 AT4G21860 methionine sulfoxide reductase B 2 methionine sulfoxide reductase B 2 0.7 0.31 -0.31
40 AT1G06820 carotenoid isomerase CAROTENOID AND CHLOROPLAST
REGULATION 2, carotenoid isomerase		 0.7 0.32 -0.34
41 AT2G15290 translocon at inner membrane of chloroplasts 21 TRANSLOCON AT INNER MEMBRANE OF
CHLOROPLASTS 21, CHLOROPLAST
IMPORT APPARATUS 5, PERMEASE IN
CHLOROPLASTS 1, translocon at
inner membrane of chloroplasts 21		 0.7 0.32 -0.3
42 AT3G03860 APR-like 5 APR-like 5, APR-like 5 0.69 0.31 -0.31
43 AT5G06130 chaperone protein dnaJ-related 0.69 0.34 -0.32
44 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 0.69 0.33 -0.31
45 AT3G05350 Metallopeptidase M24 family protein 0.69 0.32 -0.34
46 AT4G36910 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 1,
CYSTATHIONE [BETA]-SYNTHASE
DOMAIN-CONTAINING PROTEIN 2, LOSS
OF THE TIMING OF ET AND JA
BIOSYNTHESIS 2		 0.69 0.3 -0.32
47 AT3G48410 alpha/beta-Hydrolases superfamily protein -0.69 0.32 -0.32
48 AT4G34350 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CHLOROPLAST BIOGENESIS 6,
4-hydroxy-3-methylbut-2-enyl
diphosphate reductase, ISPH		 0.68 0.31 -0.3
49 AT5G03420 5'-AMP-activated protein kinase-related 0.68 0.32 -0.31
50 AT1G32500 non-intrinsic ABC protein 6 ATP-binding cassette I7,
non-intrinsic ABC protein 6,
non-intrinsic ABC protein 6		 0.68 0.32 -0.31
51 AT5G57850 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.68 0.32 -0.31
52 AT4G33460 ABC transporter family protein ATP-binding cassette I10, ATNAP13,
embryo defective 2751		 0.67 0.3 -0.32
53 AT1G12320 Protein of unknown function (DUF1442) 0.67 0.32 -0.31
54 AT2G30950 FtsH extracellular protease family FTSH2, VARIEGATED 2 0.67 0.31 -0.31
55 AT1G30510 root FNR 2 root FNR 2, root FNR 2 -0.67 0.29 -0.32
56 AT4G30310 FGGY family of carbohydrate kinase 0.67 0.29 -0.29
57 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 0.67 0.31 -0.34
58 AT3G57810 Cysteine proteinases superfamily protein 0.67 0.32 -0.3
59 AT3G26750 CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme
E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits
to 25 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.3 -0.31
60 AT4G12060 Double Clp-N motif protein 0.66 0.29 -0.3
61 AT5G21060 Glyceraldehyde-3-phosphate dehydrogenase-like family
protein		 0.66 0.31 -0.3
62 AT5G49940 NIFU-like protein 2 CHLOROPLAST-LOCALIZED NIFU-LIKE
PROTEIN 2, NIFU-like protein 2		 0.66 0.3 -0.31
63 AT1G24490 OxaA/YidC-like membrane insertion protein ALBINA 4, ARABIDOPSIS THALIANA
ENVELOPE MEMBRANE INTEGRASE		 0.66 0.3 -0.29
64 AT4G17300 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 ATNS1, NS1, ovule abortion 8 0.66 0.32 -0.32
65 AT5G60750 CAAX amino terminal protease family protein 0.66 0.32 -0.33
66 AT2G44050 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase /
lumazine synthase / riboflavin synthase		 COI1 SUPPRESSOR1, coronatine
insensitive1 suppressor		 0.66 0.32 -0.32
67 AT2G32280 Protein of unknown function (DUF1218) -0.66 0.34 -0.3
68 AT1G70610 transporter associated with antigen processing protein 1 ATP-binding cassette B26,
transporter associated with
antigen processing protein 1,
transporter associated with
antigen processing protein 1		 0.65 0.3 -0.3
69 AT3G02290 RING/U-box superfamily protein 0.65 0.34 -0.32
70 AT5G16290 VALINE-TOLERANT 1 VALINE-TOLERANT 1 0.65 0.31 -0.3
71 AT5G07730 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G61360.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.65 0.32 -0.29
72 AT5G65670 indole-3-acetic acid inducible 9 indole-3-acetic acid inducible 9 -0.65 0.32 -0.31
73 AT1G76080 chloroplastic drought-induced stress protein of 32 kD ARABIDOPSIS THALIANA CHLOROPLASTIC
DROUGHT-INDUCED STRESS PROTEIN OF
32 KD, chloroplastic
drought-induced stress protein of
32 kD		 0.65 0.31 -0.32
74 AT4G33490 Eukaryotic aspartyl protease family protein 0.65 0.32 -0.32
75 AT5G10490 MSCS-like 2 MSCS-like 2 0.65 0.33 -0.32
76 AT4G13260 Flavin-binding monooxygenase family protein YUCCA2 0.65 0.31 -0.34
77 AT2G39370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits
to 178 proteins in 53 species: Archae - 0; Bacteria - 58;
Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 4		 -0.65 0.32 -0.28
78 AT1G34110 Leucine-rich receptor-like protein kinase family protein -0.64 0.31 -0.31
79 AT1G79470 Aldolase-type TIM barrel family protein -0.63 0.31 -0.31
80 AT3G62270 HCO3- transporter family -0.63 0.32 -0.33
81 AT1G50660 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins
in 1325 species: Archae - 461; Bacteria - 2309; Metazoa -
11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other
Eukaryotes - 4809 (source: NCBI BLink).		 -0.63 0.33 -0.3
82 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 -0.62 0.3 -0.3
83 AT1G73590 Auxin efflux carrier family protein ARABIDOPSIS THALIANA PIN-FORMED 1,
PIN-FORMED 1		 -0.62 0.34 -0.32
84 AT3G57260 beta-1,3-glucanase 2 AtPR2, BETA-1,3-GLUCANASE 2,
beta-1,3-glucanase 2,
PATHOGENESIS-RELATED PROTEIN 2,
PATHOGENESIS-RELATED PROTEIN 2		 -0.62 0.33 -0.31
85 AT1G13330 Arabidopsis Hop2 homolog Arabidopsis Hop2 homolog -0.61 0.34 -0.31
86 AT4G38210 expansin A20 ATEXP20, expansin A20, ATHEXP
ALPHA 1.23, EXPANSIN 20, expansin
A20		 -0.61 0.31 -0.31
87 AT2G47260 WRKY DNA-binding protein 23 WRKY DNA-BINDING PROTEIN 23, WRKY
DNA-binding protein 23		 -0.61 0.32 -0.33
88 AT1G67750 Pectate lyase family protein -0.61 0.31 -0.33
89 AT1G14350 Duplicated homeodomain-like superfamily protein myb domain protein 124, FOUR LIPS,
MYB124		 -0.6 0.3 -0.32
90 AT4G00990 Transcription factor jumonji (jmjC) domain-containing
protein		 -0.6 0.3 -0.33
91 AT5G18560 Integrase-type DNA-binding superfamily protein PUCHI -0.6 0.32 -0.3
92 AT1G47670 Transmembrane amino acid transporter family protein -0.6 0.33 -0.32
93 AT4G28650 Leucine-rich repeat transmembrane protein kinase family
protein		 -0.6 0.31 -0.33
94 AT1G79580 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 33, SOMBRERO		 -0.59 0.29 -0.34
95 AT3G14280 unknown protein; Has 51 Blast hits to 51 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.29 -0.3
96 AT1G73620 Pathogenesis-related thaumatin superfamily protein -0.59 0.32 -0.33
97 AT3G15240 Serine/threonine-protein kinase WNK (With No
Lysine)-related		 -0.59 0.33 -0.31
98 AT3G25640 Protein of unknown function, DUF617 -0.59 0.3 -0.31
99 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.59 0.3 -0.32
100 AT4G31890 ARM repeat superfamily protein -0.59 0.33 -0.3
101 AT1G34750 Protein phosphatase 2C family protein -0.59 0.32 -0.32
102 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.58 0.32 -0.32
103 AT2G45830 downstream target of AGL15 2 downstream target of AGL15 2 -0.58 0.32 -0.33
104 AT4G36430 Peroxidase superfamily protein -0.58 0.32 -0.31
105 AT5G10380 RING/U-box superfamily protein ATRING1, RING1 -0.57 0.32 -0.34
106 AT1G11420 DOMAIN OF UNKNOWN FUNCTION 724 2 DOMAIN OF UNKNOWN FUNCTION 724 2,
DOMAIN OF UNKNOWN FUNCTION 724 2		 -0.56 0.3 -0.32
107 AT4G00820 IQ-domain 17 IQ-domain 17 -0.56 0.31 -0.33
108 AT3G20840 Integrase-type DNA-binding superfamily protein PLETHORA 1 -0.56 0.31 -0.29
109 AT4G17350 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.56 0.3 -0.32
110 AT3G50640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66800.1); Has 67 Blast hits
to 67 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.31 -0.32
111 AT5G13520 peptidase M1 family protein -0.56 0.32 -0.3
112 AT3G13650 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.55 0.29 -0.31
113 AT1G69180 Plant-specific transcription factor YABBY family protein CRABS CLAW -0.55 0.32 -0.32
114 AT2G19580 tetraspanin2 tetraspanin2 -0.55 0.33 -0.3
115 AT5G33300 chromosome-associated kinesin-related -0.55 0.34 -0.34
116 AT5G47440 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.55 0.3 -0.32
117 AT5G55170 small ubiquitin-like modifier 3 ATSUMO3, SMALL UBIQUITIN-LIKE
MODIFIER 3, SMALL UBIQUITIN-LIKE
MODIFIER 3, small ubiquitin-like
modifier 3		 -0.55 0.31 -0.32
118 AT5G20950 Glycosyl hydrolase family protein -0.54 0.31 -0.32
119 AT3G24450 Heavy metal transport/detoxification superfamily protein -0.53 0.32 -0.32
120 AT5G40840 Rad21/Rec8-like family protein Sister chromatid cohesion 1 (SCC1)
protein homolog 2, SYN2		 -0.53 0.3 -0.32
121 AT1G08500 early nodulin-like protein 18 AtENODL18, early nodulin-like
protein 18		 -0.53 0.34 -0.31
122 AT5G60200 TARGET OF MONOPTEROS 6 TARGET OF MONOPTEROS 6 -0.53 0.33 -0.32
123 AT2G23060 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.53 0.31 -0.32
124 AT3G15540 indole-3-acetic acid inducible 19 indole-3-acetic acid inducible 19,
MASSUGU 2		 -0.53 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
125 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.85 0.46 -0.44 C0133
126 C0035 4-Methoxyindol-3-ylmethylglucosinolate - 4-Methoxy-3-indolylmethyl glucosinolate glucosinolate biosynthesis from tryptophan,
indole glucosinolate breakdown (active in intact plant cell) 		-0.68 0.42 -0.44 C0035