AT2G29540 : ATRPAC14
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT2G29540
Description RNApolymerase 14 kDa subunit
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 1 0.31 -0.33
2 AT1G04340 HR-like lesion-inducing protein-related 0.84 0.3 -0.32
3 AT4G30800 Nucleic acid-binding, OB-fold-like protein 0.84 0.32 -0.33
4 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.84 0.3 -0.31
5 AT3G27280 prohibitin 4 prohibitin 4, prohibitin 4 0.83 0.33 -0.31
6 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.83 0.33 -0.32
7 AT2G46230 PIN domain-like family protein 0.83 0.32 -0.32
8 AT1G44835 YbaK/aminoacyl-tRNA synthetase-associated domain 0.83 0.31 -0.32
9 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.83 0.32 -0.32
10 AT1G28395 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.83 0.29 -0.33
11 AT2G44860 Ribosomal protein L24e family protein 0.83 0.34 -0.32
12 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.83 0.33 -0.34
13 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 0.82 0.31 -0.31
14 AT3G49080 Ribosomal protein S5 domain 2-like superfamily protein 0.82 0.31 -0.29
15 AT3G61620 3'-5'-exoribonuclease family protein RRP41 0.82 0.33 -0.32
16 AT2G47640 Small nuclear ribonucleoprotein family protein 0.82 0.3 -0.33
17 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.82 0.31 -0.33
18 AT4G34360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.82 0.34 -0.32
19 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 0.81 0.31 -0.31
20 AT1G70350 unknown protein; Has 98 Blast hits to 98 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.81 0.33 -0.3
21 AT2G39795 Mitochondrial glycoprotein family protein 0.81 0.33 -0.33
22 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.3 -0.32
23 AT1G54160 nuclear factor Y, subunit A5 nuclear factor Y, subunit A5,
NUCLEAR FACTOR Y A5		 -0.81 0.32 -0.34
24 AT5G23300 pyrimidine d pyrimidine d 0.81 0.3 -0.36
25 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 0.81 0.31 -0.31
26 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 0.81 0.3 -0.29
27 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.8 0.3 -0.32
28 AT1G14980 chaperonin 10 chaperonin 10 0.8 0.33 -0.31
29 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.8 0.33 -0.31
30 AT3G22300 ribosomal protein S10 ribosomal protein S10 0.8 0.33 -0.32
31 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.8 0.31 -0.35
32 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.79 0.33 -0.29
33 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.79 0.31 -0.32
34 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.78 0.32 -0.32
35 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.31 -0.33
36 AT5G08040 mitochondrial import receptor subunit TOM5 homolog mitochondrial import receptor
subunit TOM5 homolog		 0.78 0.34 -0.3
37 AT3G07590 Small nuclear ribonucleoprotein family protein 0.78 0.34 -0.31
38 AT5G58030 Transport protein particle (TRAPP) component 0.78 0.32 -0.32
39 AT5G64650 Ribosomal protein L17 family protein 0.78 0.29 -0.33
40 AT2G19670 protein arginine methyltransferase 1A ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 1A,
protein arginine methyltransferase
1A		 0.78 0.31 -0.3
41 AT2G37020 Translin family protein 0.78 0.3 -0.28
42 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 0.78 0.34 -0.29
43 AT3G51010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.78 0.3 -0.33
44 AT1G26840 origin recognition complex protein 6 ARABIDOPSIS THALIANA ORIGIN
RECOGNITION COMPLEX PROTEIN 6,
origin recognition complex protein
6		 0.78 0.31 -0.33
45 AT1G12270 stress-inducible protein, putative Hop1 0.78 0.31 -0.33
46 AT1G77750 Ribosomal protein S13/S18 family 0.78 0.32 -0.29
47 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 0.77 0.31 -0.31
48 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.33 -0.32
49 AT5G23290 prefoldin 5 prefoldin 5 0.77 0.31 -0.34
50 AT3G13160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.34 -0.33
51 AT2G44510 CDK inhibitor P21 binding protein 0.77 0.32 -0.3
52 AT1G26740 Ribosomal L32p protein family 0.77 0.31 -0.33
53 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 0.76 0.32 -0.35
54 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.76 0.33 -0.3
55 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.76 0.33 -0.32
56 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein 0.76 0.31 -0.33
57 AT1G73940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits
to 54 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.3 -0.31
58 AT1G32740 SBP (S-ribonuclease binding protein) family protein -0.76 0.33 -0.31
59 AT2G31725 Eukaryotic protein of unknown function (DUF842) 0.76 0.34 -0.33
60 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.76 0.31 -0.33
61 AT1G60770 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.32 -0.31
62 AT1G09910 Rhamnogalacturonate lyase family protein -0.76 0.32 -0.31
63 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.75 0.33 -0.31
64 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.74 0.32 -0.32
65 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.74 0.3 -0.33
66 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 -0.74 0.3 -0.32
67 AT3G03620 MATE efflux family protein -0.73 0.33 -0.3
68 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.3 -0.32
69 AT3G26000 Ribonuclease inhibitor -0.73 0.31 -0.32
70 AT2G21820 unknown protein; Has 45 Blast hits to 45 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.32 -0.31
71 AT4G03200 catalytics -0.72 0.3 -0.29
72 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.72 0.32 -0.29
73 AT5G52410 CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23890.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.71 0.31 -0.33
74 AT1G16730 unknown protein 6 unknown protein 6 -0.71 0.31 -0.31
75 AT1G50410 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.71 0.32 -0.31
76 AT4G15475 F-box/RNI-like superfamily protein -0.71 0.3 -0.3
77 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.7 0.32 -0.33
78 AT1G72650 TRF-like 6 TRF-like 6 -0.7 0.33 -0.31
79 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 -0.7 0.3 -0.32
80 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.69 0.32 -0.32
81 AT1G72830 nuclear factor Y, subunit A3 ATHAP2C, HAP2C, nuclear factor Y,
subunit A3		 -0.69 0.32 -0.32
82 AT5G50170 C2 calcium/lipid-binding and GRAM domain containing protein -0.69 0.3 -0.31
83 AT5G11840 Protein of unknown function (DUF1230) -0.69 0.3 -0.33
84 AT3G03240 alpha/beta-Hydrolases superfamily protein -0.69 0.32 -0.31
85 AT3G22430 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS
(InterPro:IPR005380); BEST Arabidopsis thaliana protein
match is: XS domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1); Has
565 Blast hits to 510 proteins in 121 species: Archae - 2;
Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51;
Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).		 -0.68 0.31 -0.3
86 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.68 0.32 -0.31
87 AT5G25520 SPOC domain / Transcription elongation factor S-II protein -0.68 0.31 -0.33
88 AT2G37650 GRAS family transcription factor -0.68 0.31 -0.31
89 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B -0.68 0.32 -0.33
90 AT5G10940 transducin family protein / WD-40 repeat family protein ALTERED SEED GERMINATION 2 -0.68 0.31 -0.31
91 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 -0.68 0.29 -0.31
92 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 -0.67 0.29 -0.3
93 AT4G30960 SOS3-interacting protein 3 CBL-INTERACTING PROTEIN KINASE 6,
CBL-INTERACTING PROTEIN KINASE 6,
SOS3-interacting protein 3,
SNF1-RELATED PROTEIN KINASE 3.14		 -0.67 0.32 -0.3
94 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.67 0.32 -0.32
95 AT4G34040 RING/U-box superfamily protein -0.67 0.32 -0.31
96 AT5G58160 actin binding -0.67 0.29 -0.3
97 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.29 -0.32
98 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.67 0.31 -0.33
99 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.67 0.32 -0.31
100 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.66 0.33 -0.33
101 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.66 0.31 -0.32
102 AT3G56140 Protein of unknown function (DUF399 and DUF3411) -0.66 0.31 -0.31
103 AT5G45160 Root hair defective 3 GTP-binding protein (RHD3) -0.66 0.32 -0.3
104 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.65 0.32 -0.32
105 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 -0.65 0.32 -0.32
106 AT1G63740 Disease resistance protein (TIR-NBS-LRR class) family -0.65 0.32 -0.32
107 AT3G19420 PTEN 2 PTEN 2, PTEN 2, phosphatase and
TENsin homolog deleted on
chromosome ten 2A		 -0.65 0.31 -0.34
108 AT2G28490 RmlC-like cupins superfamily protein -0.65 0.32 -0.32
109 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.65 0.31 -0.32
110 AT1G28570 SGNH hydrolase-type esterase superfamily protein -0.64 0.31 -0.32
111 AT4G00750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.32 -0.29
112 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE -0.64 0.33 -0.31
113 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 -0.64 0.32 -0.31
114 AT2G33020 receptor like protein 24 receptor like protein 24, receptor
like protein 24		 -0.64 0.31 -0.31
115 AT4G26180 Mitochondrial substrate carrier family protein -0.64 0.33 -0.3
116 AT5G35180 Protein of unknown function (DUF1336) -0.64 0.32 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0217 Putative glucosinole - - - 0.86 0.43 -0.45
118 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.78 0.44 -0.43