AT2G47780 : -
Query Information
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AGICode AT2G47780
Description Rubber elongation factor protein (REF)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G47780 Rubber elongation factor protein (REF) 1 0.28 -0.33
2 AT2G38530 lipid transfer protein 2 cell growth defect factor-3, LP2,
lipid transfer protein 2		 0.75 0.33 -0.32
3 AT5G40450 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.72 0.31 -0.3
4 AT2G21650 Homeodomain-like superfamily protein ARABIDOPSIS RAD-LIKE 2, MATERNAL
EFFECT EMBRYO ARREST 3,
RADIALIS-LIKE SANT/MYB 1		 -0.72 0.32 -0.32
5 AT3G15670 Late embryogenesis abundant protein (LEA) family protein 0.7 0.33 -0.31
6 AT4G40010 SNF1-related protein kinase 2.7 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-7, SNF1-related
protein kinase 2.7, SRK2F		 0.69 0.3 -0.32
7 AT5G22500 fatty acid reductase 1 fatty acid reductase 1 0.69 0.3 -0.32
8 AT1G09520 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, PHD-type, conserved site
(InterPro:IPR019786); BEST Arabidopsis thaliana protein
match is: PHD finger family protein (TAIR:AT3G17460.1); Has
56 Blast hits to 56 proteins in 17 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.69 0.3 -0.31
9 AT1G62290 Saposin-like aspartyl protease family protein 0.68 0.32 -0.3
10 AT4G29190 Zinc finger C-x8-C-x5-C-x3-H type family protein Arabidopsis thaliana
oxidation-related zinc finger 2,
oxidation-related zinc finger 2		 0.68 0.31 -0.31
11 AT5G67360 Subtilase family protein ARA12 0.66 0.34 -0.31
12 AT2G11810 monogalactosyldiacylglycerol synthase type C ATMGD3, MONOGALACTOSYL
DIACYLGLYCEROL SYNTHASE 3,
monogalactosyldiacylglycerol
synthase type C		 -0.63 0.32 -0.3
13 AT5G60910 AGAMOUS-like 8 AGAMOUS-like 8, FRUITFULL 0.63 0.28 -0.32
14 AT2G32990 glycosyl hydrolase 9B8 glycosyl hydrolase 9B8, glycosyl
hydrolase 9B8		 -0.62 0.33 -0.3
15 AT2G37540 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.31 -0.32
16 AT1G67860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67865.1); Has 13 Blast hits
to 13 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.3 -0.31
17 AT2G42620 RNI-like superfamily protein MORE AXILLARY BRANCHES 2, ORESARA
9, PLEIOTROPIC PHOTOSIGNALING		 0.61 0.33 -0.31
18 AT5G16530 Auxin efflux carrier family protein PIN-FORMED 5 -0.61 0.31 -0.31
19 AT1G14890 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.61 0.3 -0.31
20 AT2G42250 cytochrome P450, family 712, subfamily A, polypeptide 1 cytochrome P450, family 712,
subfamily A, polypeptide 1		 -0.61 0.32 -0.32
21 AT4G10120 Sucrose-phosphate synthase family protein ATSPS4F -0.61 0.31 -0.33
22 AT3G09360 Cyclin/Brf1-like TBP-binding protein -0.6 0.3 -0.32
23 AT3G50980 dehydrin xero 1 dehydrin xero 1 0.6 0.32 -0.28
24 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 0.6 0.32 -0.3
25 AT3G54610 histone acetyltransferase of the GNAT family 1 BIG TOP, general control
non-repressible 5, HAC3, HAG01,
histone acetyltransferase of the
GNAT family 1, HISTONE
ACETYLTRANSFERASE 1		 -0.6 0.32 -0.31
26 AT1G09570 phytochrome A FAR RED ELONGATED HYPOCOTYL 2, FAR
RED ELONGATED 1, ELONGATED
HYPOCOTYL 8, phytochrome A		 0.6 0.32 -0.33
27 AT1G08630 threonine aldolase 1 threonine aldolase 1 0.6 0.33 -0.3
28 AT2G30460 Nucleotide/sugar transporter family protein -0.6 0.32 -0.31
29 AT3G60850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 11 growth stages; Has 42
Blast hits to 42 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.59 0.29 -0.34
30 AT3G61460 brassinosteroid-responsive RING-H2 brassinosteroid-responsive RING-H2 0.59 0.33 -0.33
31 AT1G71980 Protease-associated (PA) RING/U-box zinc finger family
protein		 0.59 0.31 -0.3
32 AT5G51030 NAD(P)-binding Rossmann-fold superfamily protein -0.59 0.3 -0.31
33 AT5G57800 Fatty acid hydroxylase superfamily ECERIFERUM 3, FACELESS POLLEN 1,
WAX2, YRE		 0.59 0.31 -0.32
34 AT5G36940 cationic amino acid transporter 3 cationic amino acid transporter 3 -0.59 0.32 -0.33
35 AT3G55030 phosphatidylglycerolphosphate synthase 2 phosphatidylglycerolphosphate
synthase 2		 0.59 0.31 -0.32
36 AT3G51810 Stress induced protein AT3, ARABIDOPSIS THALIANA LATE
EMBRYOGENESIS ABUNDANT 1, LATE
EMBRYOGENESIS ABUNDANT 1, GUANINE
NUCLEOTIDE EXCHANGE FACTOR FOR ADP
RIBOSYLATION FACTORS 1		 0.59 0.33 -0.32
37 AT5G39720 avirulence induced gene 2 like protein avirulence induced gene 2 like
protein		 0.59 0.3 -0.32
38 AT1G72660 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.58 0.3 -0.31
39 AT2G38300 myb-like HTH transcriptional regulator family protein -0.58 0.32 -0.33
40 AT2G05755 Nodulin MtN21 /EamA-like transporter family protein -0.58 0.33 -0.29
41 AT4G15590 transposable element gene -0.58 0.32 -0.33
42 AT1G25530 Transmembrane amino acid transporter family protein 0.57 0.32 -0.32
43 AT4G13480 myb domain protein 79 myb domain protein 79, myb domain
protein 79		 0.57 0.31 -0.31
44 AT3G15220 Protein kinase superfamily protein -0.57 0.33 -0.32
45 AT5G07550 glycine-rich protein 19 ATGRP19, glycine-rich protein 19 -0.57 0.31 -0.33
46 AT2G24410 BEST Arabidopsis thaliana protein match is: SMAD/FHA
domain-containing protein (TAIR:AT3G20550.1); Has 194
Blast hits to 194 proteins in 92 species: Archae - 0;
Bacteria - 0; Metazoa - 118; Fungi - 33; Plants - 30;
Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).		 0.57 0.31 -0.31
47 AT1G78990 HXXXD-type acyl-transferase family protein -0.57 0.34 -0.3
48 AT1G24450 Ribonuclease III family protein NUCLEAR FUSION DEFECTIVE 2 0.57 0.29 -0.31
49 AT3G28790 Protein of unknown function (DUF1216) 0.57 0.3 -0.31
50 AT1G01120 3-ketoacyl-CoA synthase 1 3-ketoacyl-CoA synthase 1 0.57 0.32 -0.31
51 AT1G30820 CTP synthase family protein -0.56 0.3 -0.32
52 AT1G64590 NAD(P)-binding Rossmann-fold superfamily protein -0.56 0.34 -0.3
53 AT5G27320 alpha/beta-Hydrolases superfamily protein ATGID1C, GA INSENSITIVE DWARF1C 0.56 0.3 -0.31
54 AT1G54330 NAC domain containing protein 20 NAC domain containing protein 20,
NAC domain containing protein 20		 -0.56 0.3 -0.32
55 AT2G42270 U5 small nuclear ribonucleoprotein helicase -0.56 0.31 -0.31
56 AT5G05870 UDP-glucosyl transferase 76C1 UDP-glucosyl transferase 76C1 0.56 0.31 -0.29
57 AT1G22460 O-fucosyltransferase family protein -0.56 0.3 -0.32
58 AT4G30140 GDSL-like Lipase/Acylhydrolase superfamily protein CUTICLE DESTRUCTING FACTOR 1 -0.56 0.32 -0.32
59 AT5G43900 myosin 2 ARABIDOPSIS MYOSIN 2, myosin 2,
MYOSIN X1 2, MYOSIN XI-6		 -0.55 0.32 -0.32
60 AT2G02960 RING/FYVE/PHD zinc finger superfamily protein -0.55 0.31 -0.31
61 AT3G07340 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.55 0.32 -0.32
62 AT5G17780 alpha/beta-Hydrolases superfamily protein 0.54 0.35 -0.33
63 AT5G25190 Integrase-type DNA-binding superfamily protein ethylene and salt inducible 3 0.54 0.33 -0.29
64 AT3G20480 tetraacyldisaccharide 4'-kinase family protein AtLpxK, lipid X K -0.54 0.32 -0.35
65 AT3G25220 FK506-binding protein 15 kD-1 FK506-binding protein 15 kD-1 -0.54 0.32 -0.33
66 AT1G55030 RNI-like superfamily protein -0.54 0.3 -0.33
67 AT5G44550 Uncharacterised protein family (UPF0497) -0.54 0.31 -0.31
68 AT1G49960 Xanthine/uracil permease family protein -0.54 0.32 -0.32
69 AT5G55240 ARABIDOPSIS THALIANA PEROXYGENASE 2 ARABIDOPSIS THALIANA PEROXYGENASE
2		 0.54 0.31 -0.3
70 AT3G22400 PLAT/LH2 domain-containing lipoxygenase family protein Arabidopsis thaliana lipoxygenase
5, LOX5		 -0.54 0.31 -0.31
71 AT4G14840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits
to 1532 proteins in 283 species: Archae - 19; Bacteria -
179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5;
Other Eukaryotes - 545 (source: NCBI BLink).		 0.53 0.29 -0.32
72 AT5G42290 transcription activator-related 0.53 0.33 -0.32
73 AT5G67000 Integrase-type DNA-binding superfamily protein -0.53 0.32 -0.34
74 AT4G21620 glycine-rich protein 0.53 0.31 -0.34
75 AT5G60080 Protein kinase superfamily protein -0.53 0.31 -0.3
76 AT2G42960 Protein kinase superfamily protein 0.53 0.34 -0.3
77 AT1G47340 F-box and associated interaction domains-containing protein 0.53 0.3 -0.32
78 AT5G57240 OSBP(oxysterol binding protein)-related protein 4C OSBP(oxysterol binding
protein)-related protein 4C		 0.53 0.32 -0.33
79 AT1G17710 Pyridoxal phosphate phosphatase-related protein Arabidopsis thaliana
phosphoethanolamine/phosphocholine
phosphatase 1,
phosphoethanolamine/phosphocholine
phosphatase 1		 -0.53 0.32 -0.32
80 AT2G02610 Cysteine/Histidine-rich C1 domain family protein -0.53 0.3 -0.33
81 AT3G27960 Tetratricopeptide repeat (TPR)-like superfamily protein -0.52 0.31 -0.31
82 AT2G20700 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 LORELEI-LIKE-GPI ANCHORED PROTEIN
2		 -0.52 0.3 -0.33
83 AT1G19040 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.52 0.31 -0.34
84 AT4G39770 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
H		 -0.52 0.32 -0.32
85 AT3G45740 hydrolase family protein / HAD-superfamily protein -0.52 0.31 -0.32
86 AT1G79200 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.52 0.31 -0.32
87 AT2G25230 myb domain protein 100 myb domain protein 100, myb domain
protein 100		 -0.51 0.32 -0.31
88 AT1G04200 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395
Blast hits to 389 proteins in 117 species: Archae - 0;
Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.51 0.31 -0.33
89 AT2G45650 AGAMOUS-like 6 AGAMOUS-like 6 0.51 0.31 -0.3
90 AT3G14750 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits
to 3091 proteins in 519 species: Archae - 61; Bacteria -
669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses -
4; Other Eukaryotes - 1123 (source: NCBI BLink).		 -0.51 0.31 -0.32
91 AT3G14560 unknown protein; Has 6 Blast hits to 6 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.51 0.33 -0.31
92 AT5G07950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 9 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.51 0.3 -0.32
93 AT5G43770 proline-rich family protein 0.51 0.32 -0.3
94 AT4G34250 3-ketoacyl-CoA synthase 16 3-ketoacyl-CoA synthase 16 0.51 0.31 -0.33
95 AT1G55760 BTB/POZ domain-containing protein 0.51 0.32 -0.32
96 AT5G20410 monogalactosyldiacylglycerol synthase 2 ARABIDOPSIS THALIANA
MONOGALACTOSYLDIACYLGLYCEROL
SYNTHASE 2,
monogalactosyldiacylglycerol
synthase 2		 -0.5 0.32 -0.31
97 AT4G37820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G22795.1); Has 433572 Blast
hits to 177005 proteins in 4263 species: Archae - 2016;
Bacteria - 67591; Metazoa - 157995; Fungi - 49745; Plants -
22011; Viruses - 2192; Other Eukaryotes - 132022 (source:
NCBI BLink).		 -0.5 0.3 -0.32
98 AT1G63290 Aldolase-type TIM barrel family protein -0.5 0.33 -0.33
99 AT3G63340 Protein phosphatase 2C family protein -0.49 0.31 -0.31
100 AT4G08840 pumilio 11 pumilio 11, pumilio 11 -0.49 0.33 -0.34
101 AT3G45950 Pre-mRNA splicing Prp18-interacting factor -0.49 0.3 -0.34
102 AT4G04955 allantoinase allantoinase, allantoinase -0.49 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
103 C0126 Isorhamnetin-dirhamnoside - - - 0.72 0.44 -0.46
104 C0235 Sinapoyl malate Sinapoyl-(S)-malate Sinapoyl-(S)-malate sinapate ester biosynthesis -0.53 0.31 -0.31 C0235