AT2G23860 : -
Query Information
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AGICode AT2G23860
Description pseudogene, similar to VAP27, blastp match of 56% identity and 1.3e-25 P-value to GP|6688926|emb|CAB65313.1||AJ251365 VAP27 {Nicotiana plumbaginifolia}
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G23860 pseudogene, similar to VAP27, blastp match of 56% identity
and 1.3e-25 P-value to GP|6688926|emb|CAB65313.1||AJ251365
VAP27 {Nicotiana plumbaginifolia}		 1 0.32 -0.32
2 AT1G36910 transposable element gene -0.73 0.34 -0.3
3 AT1G09550 Pectinacetylesterase family protein 0.72 0.31 -0.32
4 AT1G70920 homeobox-leucine zipper protein 18 homeobox-leucine zipper protein
18, homeobox-leucine zipper
protein 18		 -0.71 0.31 -0.32
5 AT2G13230 transposable element gene -0.71 0.3 -0.32
6 AT1G21300 transposable element gene -0.71 0.34 -0.31
7 AT5G22420 fatty acid reductase 7 fatty acid reductase 7 -0.7 0.32 -0.33
8 AT3G29690 HXXXD-type acyl-transferase family protein -0.7 0.33 -0.31
9 AT5G49945 Protein of unknown function (DUF1682) -0.7 0.3 -0.32
10 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 0.69 0.32 -0.33
11 AT4G02170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38700.1); Has 53 Blast hits
to 53 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.31 -0.3
12 AT1G57780 heavy-metal-associated domain-containing protein -0.69 0.32 -0.31
13 AT5G14620 domains rearranged methyltransferase 2 DMT7, domains rearranged
methyltransferase 2		 0.69 0.34 -0.3
14 AT2G33030 receptor like protein 25 receptor like protein 25, receptor
like protein 25		 -0.69 0.32 -0.3
15 AT5G13670 nodulin MtN21 /EamA-like transporter family protein 0.68 0.33 -0.31
16 AT3G56610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: embryo, sperm cell,
sepal, pedicel, synergid; EXPRESSED DURING: 4 anthesis, C
globular stage; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF784, Arabidopsis thaliana
(InterPro:IPR008502); Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.68 0.31 -0.3
17 AT3G05490 ralf-like 22 ralf-like 22 -0.68 0.34 -0.31
18 AT2G10020 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.68 0.32 -0.35
19 AT3G04780 Protein of unknown function (DUF1000) -0.67 0.31 -0.31
20 AT3G47980 Integral membrane HPP family protein -0.67 0.32 -0.32
21 AT3G44980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G07215.1); Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.67 0.3 -0.31
22 AT4G23320 cysteine-rich RLK (RECEPTOR-like protein kinase) 24 cysteine-rich RLK (RECEPTOR-like
protein kinase) 24		 -0.67 0.34 -0.32
23 AT2G35890 calcium-dependent protein kinase 25 calcium-dependent protein kinase
25		 -0.67 0.31 -0.29
24 AT3G04280 response regulator 22 response regulator 22, response
regulator 22		 -0.66 0.31 -0.3
25 AT1G62820 Calcium-binding EF-hand family protein -0.66 0.34 -0.32
26 AT3G29430 Terpenoid synthases superfamily protein -0.66 0.3 -0.32
27 AT4G11950 Protein of unknown function (DUF1191) 0.66 0.31 -0.33
28 AT2G45620 Nucleotidyltransferase family protein 0.66 0.33 -0.31
29 AT3G59100 glucan synthase-like 11 glucan synthase-like 11, gsl11,
glucan synthase-like 11		 0.66 0.3 -0.31
30 AT1G20480 AMP-dependent synthetase and ligase family protein -0.65 0.31 -0.31
31 AT1G35183 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.65 0.32 -0.32
32 AT4G07790 transposable element gene -0.65 0.3 -0.32
33 AT4G33390 Plant protein of unknown function (DUF827) -0.65 0.31 -0.33
34 AT3G32100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.32 -0.31
35 AT5G25430 HCO3- transporter family -0.65 0.34 -0.31
36 AT2G38830 Ubiquitin-conjugating enzyme/RWD-like protein -0.65 0.3 -0.34
37 AT2G37880 Protein of unknown function, DUF617 0.65 0.32 -0.32
38 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.65 0.32 -0.3
39 AT1G35970 transposable element gene 0.64 0.32 -0.32
40 ATMG00400 hypothetical protein ORF157 0.64 0.32 -0.32
41 AT4G18920 Protein of unknown function (DUF1264) -0.64 0.31 -0.35
42 AT2G23480 transposable element gene -0.64 0.31 -0.32
43 AT1G64570 Homeodomain-like superfamily protein DUO POLLEN 3 0.64 0.3 -0.31
44 AT2G30930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane, membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G06540.1); Has 194 Blast hits to 176 proteins in
78 species: Archae - 0; Bacteria - 101; Metazoa - 15; Fungi
- 25; Plants - 12; Viruses - 4; Other Eukaryotes - 37
(source: NCBI BLink).		 -0.63 0.32 -0.33
45 AT1G21430 Flavin-binding monooxygenase family protein YUC11 0.63 0.3 -0.31
46 AT4G29390 Ribosomal protein S30 family protein -0.63 0.31 -0.35
47 AT2G31110 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 40 -0.63 0.34 -0.31
48 AT1G72570 Integrase-type DNA-binding superfamily protein -0.63 0.33 -0.35
49 AT2G28680 RmlC-like cupins superfamily protein 0.63 0.32 -0.33
50 AT4G38930 Ubiquitin fusion degradation UFD1 family protein -0.63 0.32 -0.3
51 AT5G25370 phospholipase D alpha 3 phospholipase D alpha 3 -0.63 0.32 -0.31
52 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.63 0.34 -0.3
53 AT1G52570 phospholipase D alpha 2 phospholipase D alpha 2 0.63 0.3 -0.32
54 AT4G36940 nicotinate phosphoribosyltransferase 1 nicotinate
phosphoribosyltransferase 1		 0.63 0.32 -0.34
55 AT2G22630 AGAMOUS-like 17 AGAMOUS-like 17 -0.63 0.33 -0.31
56 AT1G17300 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G17285.1); Has 27 Blast hits
to 27 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.3 -0.31
57 AT5G56320 expansin A14 ATEXP14, expansin A14, ATHEXP
ALPHA 1.5, EXPANSIN 14, expansin
A14		 -0.63 0.34 -0.28
58 AT1G28270 ralf-like 4 ralf-like 4 0.63 0.32 -0.31
59 AT4G28760 Protein of unknown function (DUF3741) 0.62 0.32 -0.31
60 AT1G48910 Flavin-containing monooxygenase family protein YUCCA 10 0.62 0.35 -0.3
61 AT3G12720 myb domain protein 67 myb domain protein 67, ATY53,
MYB67, myb domain protein 67		 0.62 0.29 -0.32
62 AT1G54140 TATA binding protein associated factor 21kDa subunit TBP-ASSOCIATED FACTOR 9, TATA
binding protein associated factor
21kDa subunit		 -0.62 0.32 -0.31
63 AT5G48270 Plant protein of unknown function (DUF868) 0.62 0.32 -0.31
64 AT2G21490 dehydrin LEA dehydrin LEA 0.62 0.32 -0.31
65 AT5G09430 alpha/beta-Hydrolases superfamily protein -0.62 0.3 -0.33
66 AT5G17720 alpha/beta-Hydrolases superfamily protein -0.62 0.33 -0.31
67 AT3G21400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 29 Blast hits to 29 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants -
27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.31 -0.34
68 AT3G27440 uridine kinase-like 5 uridine kinase-like 5 -0.62 0.3 -0.32
69 AT5G02550 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.34 -0.3
70 AT4G04100 transposable element gene -0.62 0.32 -0.31
71 AT2G06500 hAT family dimerisation domain -0.62 0.33 -0.32
72 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 -0.61 0.29 -0.32
73 AT2G36720 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.61 0.34 -0.3
74 AT3G27930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; Has 35
Blast hits to 35 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.29 -0.31
75 AT1G63960 Copper transport protein family 0.61 0.32 -0.32
76 AT1G65940 pseudogene, similar to Dof zinc finger protein, blastp
match of 61% identity and 1.7e-10 P-value to
GP|4996646|dbj|BAA78575.1||AB028132 Dof zinc finger protein
{Oryza sativa}		 -0.61 0.33 -0.34
77 AT5G14890 NHL domain-containing protein -0.61 0.32 -0.32
78 AT1G31000 F-box and associated interaction domains-containing protein 0.61 0.3 -0.31
79 AT1G54955 transposable element gene -0.61 0.31 -0.34
80 AT3G51210 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.61 0.33 -0.32
81 AT3G42330 transposable element gene 0.61 0.32 -0.31
82 AT2G21000 transposable element gene -0.61 0.32 -0.33
83 AT5G66890 Leucine-rich repeat (LRR) family protein 0.61 0.33 -0.33
84 AT1G12740 cytochrome P450, family 87, subfamily A, polypeptide 2 cytochrome P450, family 87,
subfamily A, polypeptide 2		 -0.61 0.33 -0.32
85 AT1G26960 homeobox protein 23 homeobox protein 23, homeobox
protein 23		 -0.61 0.34 -0.31
86 AT3G24790 Protein kinase superfamily protein 0.61 0.3 -0.31
87 AT1G34140 poly(A) binding protein 1 poly(A) binding protein 1 0.61 0.32 -0.34
88 AT1G19485 Transducin/WD40 repeat-like superfamily protein 0.61 0.36 -0.3
89 AT3G43730 transposable element gene 0.61 0.32 -0.33
90 AT2G26420 1-phosphatidylinositol-4-phosphate 5-kinase 3 1-phosphatidylinositol-4-phosphate
5-kinase 3		 -0.61 0.33 -0.32
91 AT4G18410 transposable element gene 0.61 0.32 -0.32
92 AT3G05280 Integral membrane Yip1 family protein -0.61 0.33 -0.32
93 AT4G22030 F-box family protein with a domain of unknown function
(DUF295)		 0.6 0.33 -0.33
94 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.6 0.3 -0.32
95 AT2G45610 alpha/beta-Hydrolases superfamily protein 0.6 0.32 -0.33
96 AT1G73340 Cytochrome P450 superfamily protein -0.6 0.32 -0.32
97 AT1G77590 long chain acyl-CoA synthetase 9 long chain acyl-CoA synthetase 9 0.6 0.34 -0.32
98 AT1G48980 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.6 0.32 -0.29
99 AT5G58280 AP2/B3-like transcriptional factor family protein -0.6 0.31 -0.3
100 AT5G54350 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: C2H2-like zinc
finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.6 0.31 -0.31
101 AT1G34330 pseudogene, putative peroxidase, similar to anionic
peroxidase GI:559235 from (Petroselinum crispum); blastp
match of 35% identity and 2.3e-53 P-value to
GP|21426121|gb|AAM52318.1|AC105363_7|AC105363 Putative
peroxidase {Oryza sativa (japonica cultivar-group)}		 -0.6 0.3 -0.28
102 AT1G16360 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein		 -0.6 0.29 -0.31
103 AT4G00460 RHO guanyl-nucleotide exchange factor 3 ATROPGEF3, RHO guanyl-nucleotide
exchange factor 3		 -0.6 0.31 -0.3
104 AT4G11970 YTH family protein 0.6 0.31 -0.31
105 AT1G29220 transcriptional regulator family protein 0.6 0.32 -0.34
106 AT5G07890 myosin heavy chain-related 0.6 0.31 -0.31
107 AT3G19610 Plant protein of unknown function (DUF936) -0.6 0.3 -0.3
108 AT1G31630 AGAMOUS-like 86 AGAMOUS-like 86 -0.6 0.33 -0.33
109 AT2G17710 unknown protein; Has 39 Blast hits to 39 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.3 -0.31
110 AT1G22870 Protein kinase family protein with ARM repeat domain 0.59 0.32 -0.31
111 AT2G26490 Transducin/WD40 repeat-like superfamily protein -0.59 0.3 -0.3
112 AT2G33240 myosin XI D MYOSIN XI D, myosin XI D -0.59 0.32 -0.32
113 AT3G47660 Regulator of chromosome condensation (RCC1) family protein -0.59 0.32 -0.3
114 AT5G64360 Chaperone DnaJ-domain superfamily protein EMF1-Interacting Protein 1 0.59 0.32 -0.3
115 AT2G28960 Leucine-rich repeat protein kinase family protein -0.59 0.32 -0.32
116 AT3G20620 F-box family protein-related 0.59 0.35 -0.31
117 AT3G61720 Ca2+dependent plant phosphoribosyltransferase family
protein		 -0.59 0.32 -0.33
118 AT5G22720 F-box/RNI-like superfamily protein 0.59 0.33 -0.31
119 AT2G10620 transposable element gene -0.59 0.31 -0.3
120 AT5G24880 BEST Arabidopsis thaliana protein match is:
calmodulin-binding protein-related (TAIR:AT5G10660.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.59 0.31 -0.32
121 AT1G75950 S phase kinase-associated protein 1 ARABIDOPSIS SKP1 HOMOLOGUE 1,
ATSKP1, S phase kinase-associated
protein 1, SKP1A, UFO INTERACTING
PROTEIN 1		 -0.59 0.32 -0.32
122 AT2G32630 Pentatricopeptide repeat (PPR-like) superfamily protein 0.59 0.32 -0.31
123 AT5G42640 C2H2 and C2HC zinc fingers superfamily protein -0.59 0.31 -0.34
124 AT1G43940 transposable element gene -0.59 0.32 -0.31
125 AT5G15890 TRICHOME BIREFRINGENCE-LIKE 21 TRICHOME BIREFRINGENCE-LIKE 21 -0.59 0.32 -0.3
126 AT3G18350 Plant protein of unknown function (DUF639) 0.59 0.3 -0.3
127 AT5G24970 Protein kinase superfamily protein 0.59 0.32 -0.3
128 AT5G10880 tRNA synthetase-related / tRNA ligase-related 0.59 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		0.76 0.43 -0.45 C0225
130 C0121 Isoheptylglucosinolate - - - -0.71 0.44 -0.47
131 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.65 0.44 -0.45 C0015
132 C0009 myo-Inositol - myo-Inositol stachyose biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
D-myo-inositol (1,4,5)-trisphosphate degradation,
galactosylcyclitol biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
phytate degradation I,
myo-inositol biosynthesis,
ajugose biosynthesis I (galactinol-dependent),
phospholipid biosynthesis II 		0.63 0.46 -0.42 C0009