AT2G46020 : ARABIDOPSIS THALIANA BRAHMA
Query Information
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AGICode AT2G46020
Description transcription regulatory protein SNF2, putative
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 1 0.32 -0.32
2 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.82 0.31 -0.3
3 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B 0.82 0.3 -0.31
4 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.8 0.28 -0.32
5 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.77 0.29 -0.32
6 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.77 0.31 -0.3
7 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.77 0.34 -0.31
8 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.76 0.31 -0.31
9 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.76 0.31 -0.29
10 AT3G63180 TIC-like TICKLE, TIC-like 0.75 0.31 -0.32
11 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain 0.73 0.32 -0.32
12 AT2G07360 SH3 domain-containing protein 0.73 0.31 -0.29
13 AT3G47380 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.72 0.32 -0.32
14 AT1G05350 NAD(P)-binding Rossmann-fold superfamily protein -0.72 0.3 -0.3
15 AT5G27970 ARM repeat superfamily protein 0.72 0.32 -0.28
16 AT4G32620 Enhancer of polycomb-like transcription factor protein 0.72 0.31 -0.31
17 AT2G45540 WD-40 repeat family protein / beige-related 0.71 0.31 -0.33
18 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.71 0.31 -0.34
19 AT5G11700 LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: glycine-rich protein
(TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.71 0.31 -0.32
20 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.71 0.32 -0.32
21 AT2G25730 unknown protein; Has 157 Blast hits to 144 proteins in 62
species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source:
NCBI BLink).		 0.71 0.3 -0.36
22 AT2G14570 transposable element gene 0.71 0.32 -0.31
23 AT3G07160 glucan synthase-like 10 glucan synthase-like 10, CALS9,
gsl10, glucan synthase-like 10		 0.7 0.32 -0.31
24 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.7 0.34 -0.3
25 AT4G34040 RING/U-box superfamily protein 0.7 0.3 -0.3
26 AT2G25660 embryo defective 2410 embryo defective 2410 0.7 0.31 -0.33
27 AT1G02080 transcription regulators 0.7 0.31 -0.33
28 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.69 0.28 -0.32
29 AT1G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast
hits to 43153 proteins in 1828 species: Archae - 30;
Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants -
7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI
BLink).		 0.69 0.32 -0.33
30 AT1G47210 cyclin-dependent protein kinase 3;2 cyclin-dependent protein kinase
3;2		 -0.69 0.33 -0.31
31 AT3G27870 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 0.69 0.31 -0.31
32 AT4G24980 nodulin MtN21 /EamA-like transporter family protein 0.68 0.31 -0.33
33 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 0.68 0.31 -0.31
34 AT5G52410 CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23890.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.68 0.31 -0.32
35 AT5G06600 ubiquitin-specific protease 12 AtUBP12, ubiquitin-specific
protease 12		 0.68 0.31 -0.31
36 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.68 0.3 -0.3
37 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 0.68 0.29 -0.32
38 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 0.67 0.32 -0.33
39 AT1G26110 decapping 5 decapping 5 0.67 0.32 -0.32
40 AT2G36810 ARM repeat superfamily protein 0.67 0.31 -0.29
41 AT3G20290 EPS15 homology domain 1 EPS15 homology domain 1, EPS15
homology domain 1		 0.67 0.31 -0.31
42 AT1G03280 Transcription factor TFIIE, alpha subunit 0.67 0.33 -0.34
43 AT1G43970 unknown protein; Has 10 Blast hits to 8 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.67 0.3 -0.3
44 AT3G07600 Heavy metal transport/detoxification superfamily protein -0.67 0.3 -0.32
45 AT1G11260 sugar transporter 1 SUGAR TRANSPORTER 1, sugar
transporter 1		 -0.67 0.32 -0.32
46 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.66 0.33 -0.31
47 AT4G00550 digalactosyl diacylglycerol deficient 2 digalactosyl diacylglycerol
deficient 2		 0.66 0.31 -0.35
48 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.66 0.31 -0.31
49 AT1G58230 binding 0.66 0.31 -0.31
50 AT4G17990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17700.1); Has 134 Blast hits
to 131 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.28 -0.32
51 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.66 0.34 -0.34
52 AT3G06400 chromatin-remodeling protein 11 chromatin-remodeling protein 11 0.66 0.29 -0.33
53 AT3G56890 F-box associated ubiquitination effector family protein 0.66 0.31 -0.33
54 AT1G80070 Pre-mRNA-processing-splicing factor EMBRYO DEFECTIVE 14, EMBRYO
DEFECTIVE 177, EMBRYO DEFECTIVE
33, ABNORMAL SUSPENSOR 2		 0.66 0.33 -0.32
55 AT4G38120 ARM repeat superfamily protein 0.66 0.32 -0.31
56 AT1G59650 Protein of unknown function (DUF1336) CW14 0.66 0.32 -0.32
57 AT1G63490 transcription factor jumonji (jmjC) domain-containing
protein		 0.65 0.32 -0.32
58 AT5G03970 F-box associated ubiquitination effector family protein -0.65 0.31 -0.31
59 AT1G28570 SGNH hydrolase-type esterase superfamily protein 0.65 0.3 -0.32
60 AT5G61140 U5 small nuclear ribonucleoprotein helicase 0.65 0.32 -0.31
61 AT2G27390 proline-rich family protein 0.65 0.33 -0.31
62 AT1G64130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.65 0.31 -0.33
63 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE 0.65 0.31 -0.31
64 AT5G20840 Phosphoinositide phosphatase family protein 0.65 0.31 -0.29
65 AT1G17680 tetratricopeptide repeat (TPR)-containing protein 0.65 0.34 -0.31
66 AT5G58410 HEAT/U-box domain-containing protein 0.65 0.29 -0.32
67 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.65 0.33 -0.32
68 AT3G02890 RING/FYVE/PHD zinc finger superfamily protein 0.65 0.32 -0.31
69 AT2G25760 Protein kinase family protein 0.64 0.34 -0.33
70 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.64 0.31 -0.34
71 AT3G15120 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.64 0.33 -0.33
72 AT3G49070 Protein of unknown function (DUF677) -0.64 0.32 -0.32
73 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 0.64 0.34 -0.31
74 AT3G04605 transposable element gene 0.64 0.3 -0.31
75 AT1G08750 Peptidase C13 family -0.64 0.33 -0.3
76 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 0.64 0.3 -0.3
77 AT5G24320 Transducin/WD40 repeat-like superfamily protein 0.64 0.3 -0.3
78 AT1G77800 PHD finger family protein 0.63 0.3 -0.31
79 AT3G62160 HXXXD-type acyl-transferase family protein -0.63 0.28 -0.29
80 AT1G34350 unknown protein; Has 192 Blast hits to 192 proteins in 79
species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi -
0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source:
NCBI BLink).		 -0.63 0.31 -0.31
81 AT1G13470 Protein of unknown function (DUF1262) -0.63 0.32 -0.29
82 AT5G15240 Transmembrane amino acid transporter family protein 0.63 0.31 -0.3
83 AT1G75790 SKU5 similar 18 SKU5 similar 18 0.63 0.32 -0.32
84 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.3 -0.28
85 AT4G17980 NAC domain containing protein 71 NAC domain containing protein 71,
NAC domain containing protein 71		 -0.63 0.31 -0.33
86 AT1G16530 ASYMMETRIC LEAVES 2-like 9 ASYMMETRIC LEAVES 2-like 9, LOB
DOMAIN-CONTAINING PROTEIN 3		 -0.63 0.32 -0.33
87 AT2G23940 Protein of unknown function (DUF788) -0.62 0.31 -0.32
88 AT3G10810 zinc finger (C3HC4-type RING finger) family protein 0.62 0.33 -0.32
89 AT3G30330 transposable element gene -0.62 0.29 -0.31
90 AT1G64170 cation/H+ exchanger 16 cation/H+ exchanger 16, cation/H+
exchanger 16		 -0.62 0.29 -0.3
91 AT1G66750 CDK-activating kinase 4 AT;CDKD;2, CDK-activating kinase
4, CDK-ACTIVATING KINASE 4,
CYCLIN-DEPENDENT KINASE D1;2,
CDKD;2		 -0.62 0.33 -0.33
92 AT5G57130 Clp amino terminal domain-containing protein 0.62 0.31 -0.32
93 AT5G58270 ABC transporter of the mitochondrion 3 ATP-binding cassette B25,
ARABIDOPSIS THALIANA ABC
TRANSPORTER OF THE MITOCHONDRION
3, ABC transporter of the
mitochondrion 3, STARIK 1		 0.62 0.3 -0.32
94 AT1G79280 nuclear pore anchor TRANSLOCATED PROMOTER REGION,
nuclear pore anchor		 0.62 0.33 -0.32
95 AT4G24240 WRKY DNA-binding protein 7 ATWRKY7, WRKY DNA-binding protein
7		 -0.62 0.32 -0.31
96 AT4G11780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G23020.2); Has 550 Blast hits
to 387 proteins in 92 species: Archae - 0; Bacteria - 32;
Metazoa - 132; Fungi - 122; Plants - 80; Viruses - 0; Other
Eukaryotes - 184 (source: NCBI BLink).		 -0.62 0.33 -0.32
97 AT4G34500 Protein kinase superfamily protein -0.61 0.33 -0.32
98 AT5G66030 Golgi-localized GRIP domain-containing protein ATGRIP, GRIP 0.61 0.34 -0.32
99 AT3G21210 zinc ion binding 0.61 0.31 -0.34
100 AT4G30380 Barwin-related endoglucanase 0.61 0.32 -0.31
101 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.61 0.32 -0.3
102 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.61 0.33 -0.32
103 AT4G33210 F-box family protein SLOW MOTION 0.61 0.34 -0.32
104 AT2G43620 Chitinase family protein -0.61 0.31 -0.31
105 AT5G07040 RING/U-box superfamily protein -0.61 0.3 -0.34
106 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.61 0.3 -0.31
107 AT3G14570 glucan synthase-like 4 glucan synthase-like 4, atgsl4,
gsl04, glucan synthase-like 4		 0.61 0.3 -0.3
108 AT5G19310 Homeotic gene regulator 0.61 0.31 -0.3
109 AT5G48550 F-box associated ubiquitination effector family protein -0.61 0.34 -0.33
110 AT1G49880 Erv1/Alr family protein AtErv1, EMBRYO DEFECTIVE 3106,
Erv1		 -0.61 0.3 -0.31
111 AT3G09735 S1FA-like DNA-binding protein -0.6 0.31 -0.29
112 AT4G26330 Subtilisin-like serine endopeptidase family protein ATSBT3.18, UNFERTILIZED EMBRYO SAC
17		 -0.6 0.33 -0.32
113 AT2G24600 Ankyrin repeat family protein -0.59 0.3 -0.28
114 AT2G14170 aldehyde dehydrogenase 6B2 aldehyde dehydrogenase 6B2 -0.59 0.3 -0.3
115 AT3G57370 Cyclin family protein -0.59 0.33 -0.31
116 AT5G19240 Glycoprotein membrane precursor GPI-anchored -0.59 0.3 -0.31
117 AT3G30150 transposable element gene -0.59 0.32 -0.34
118 AT5G46750 ARF-GAP domain 9 ARF-GAP domain 9 -0.58 0.36 -0.31
119 AT5G24390 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.58 0.31 -0.32
120 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.58 0.31 -0.29
121 AT3G01240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G01230.1); Has 12 Blast hits to 12 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.58 0.3 -0.32
122 AT4G03610 Metallo-hydrolase/oxidoreductase superfamily protein -0.58 0.33 -0.31
123 AT4G15200 formin 3 formin 3, formin 3 -0.58 0.31 -0.31
124 AT5G08565 Transcription initiation Spt4-like protein -0.58 0.29 -0.3
125 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain -0.57 0.34 -0.32
126 AT1G15890 Disease resistance protein (CC-NBS-LRR class) family -0.57 0.33 -0.31
127 AT4G01740 Cysteine/Histidine-rich C1 domain family protein -0.57 0.31 -0.3
128 AT1G80740 chromomethylase 1 chromomethylase 1, DNA
METHYLTRANSFERASE 4		 -0.57 0.32 -0.3
129 AT3G61300 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.57 0.31 -0.32
130 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.57 0.33 -0.31
131 AT2G29050 RHOMBOID-like 1 RHOMBOID-like 1, RHOMBOID-like 1 -0.57 0.32 -0.28
132 AT1G15220 cytochrome c biogenesis protein family ATCCMH, CCMH -0.56 0.29 -0.31
133 AT5G11540 D-arabinono-1,4-lactone oxidase family protein -0.56 0.34 -0.3
134 AT3G48090 alpha/beta-Hydrolases superfamily protein ATEDS1, enhanced disease
susceptibility 1		 -0.56 0.34 -0.31
135 AT5G15725 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.56 0.3 -0.32
136 AT2G24390 AIG2-like (avirulence induced gene) family protein -0.56 0.32 -0.29
137 AT5G59660 Leucine-rich repeat protein kinase family protein -0.56 0.32 -0.32
138 AT4G05550 transposable element gene -0.56 0.32 -0.31
139 AT5G37030 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.56 0.31 -0.3
140 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.56 0.32 -0.32
141 AT3G04800 translocase inner membrane subunit 23-3 translocase inner membrane subunit
23-3, translocase inner membrane
subunit 23-3		 -0.56 0.31 -0.29
142 AT2G36410 Family of unknown function (DUF662) -0.56 0.3 -0.34
143 AT3G55000 tonneau family protein TONNEAU 1, TONNEAU 1A -0.56 0.32 -0.32
144 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family -0.56 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
145 C0086 Disinapylspermidine - - - 0.66 0.46 -0.45