AT2G25850 : poly(A) polymerase 2
Query Information
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AGICode AT2G25850
Description poly(A) polymerase 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G25850 poly(A) polymerase 2 poly(A) polymerase 2 1 0.33 -0.3
2 AT3G14720 MAP kinase 19 ARABIDOPSIS THALIANA MAP KINASE
19, MAP kinase 19		 0.73 0.31 -0.33
3 AT1G17440 Transcription initiation factor TFIID subunit A CYTOKININ-HYPERSENSITIVE 1,
ENHANCED ETHYLENE RESPONSE 4,
TBP-ASSOCIATED FACTOR 12B		 0.72 0.31 -0.29
4 AT3G27260 global transcription factor group E8 global transcription factor group
E8		 0.71 0.32 -0.32
5 AT1G34340 alpha/beta-Hydrolases superfamily protein 0.7 0.35 -0.34
6 AT1G30490 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 ATHB9, PHAVOLUTA 0.7 0.29 -0.33
7 AT4G32390 Nucleotide-sugar transporter family protein -0.7 0.33 -0.31
8 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 0.7 0.32 -0.32
9 AT5G11700 LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: glycine-rich protein
(TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.69 0.31 -0.31
10 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1		 0.69 0.31 -0.3
11 AT1G24706 THO2 AtTHO2, EMBRYO DEFECTIVE 2793,
THO2		 0.69 0.31 -0.33
12 AT1G74030 enolase 1 enolase 1 -0.69 0.3 -0.33
13 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 -0.68 0.32 -0.32
14 AT1G77800 PHD finger family protein 0.67 0.33 -0.32
15 AT1G27360 squamosa promoter-like 11 squamosa promoter-like 11 0.67 0.32 -0.3
16 AT1G05790 lipase class 3 family protein 0.67 0.3 -0.32
17 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.66 0.3 -0.33
18 AT2G43850 Integrin-linked protein kinase family 0.66 0.36 -0.3
19 AT5G37890 Protein with RING/U-box and TRAF-like domains -0.66 0.33 -0.3
20 AT1G27650 U2 snRNP auxiliary factor small subunit, putative ATU2AF35A -0.66 0.33 -0.32
21 AT2G39340 SAC3/GANP/Nin1/mts3/eIF-3 p25 family AtSAC3A, yeast Sac3 homolog A 0.66 0.32 -0.3
22 AT3G60660 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1395 (InterPro:IPR009829); Has 131
Blast hits to 131 proteins in 44 species: Archae - 0;
Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink).		 -0.66 0.31 -0.31
23 AT1G10590 Nucleic acid-binding, OB-fold-like protein -0.66 0.34 -0.32
24 AT4G18130 phytochrome E phytochrome E 0.66 0.31 -0.3
25 AT5G47550 Cystatin/monellin superfamily protein -0.66 0.32 -0.33
26 AT3G53720 cation/H+ exchanger 20 cation/H+ exchanger 20, cation/H+
exchanger 20		 0.65 0.33 -0.31
27 AT2G37120 S1FA-like DNA-binding protein -0.65 0.32 -0.32
28 AT5G55140 ribosomal protein L30 family protein -0.65 0.31 -0.32
29 AT4G26630 DEK domain-containing chromatin associated protein 0.65 0.32 -0.33
30 AT3G06670 binding 0.65 0.33 -0.31
31 AT3G21430 DNA binding ALWAYS EARLY 3, ARABIDOPSIS
THALIANA ALWAYS EARLY 3		 0.65 0.33 -0.32
32 AT4G37460 Tetratricopeptide repeat (TPR)-like superfamily protein SUPPRESSOR OF RPS4-RLD 1 0.65 0.32 -0.31
33 AT3G08020 PHD finger family protein 0.65 0.31 -0.34
34 AT3G05670 RING/U-box protein 0.65 0.31 -0.31
35 AT4G13210 Pectin lyase-like superfamily protein -0.65 0.32 -0.31
36 AT3G50070 CYCLIN D3;3 CYCLIN D3;3 -0.64 0.32 -0.3
37 AT3G55730 myb domain protein 109 myb domain protein 109, myb domain
protein 109		 -0.64 0.33 -0.32
38 AT4G11240 Calcineurin-like metallo-phosphoesterase superfamily
protein		 TOPP7 -0.64 0.32 -0.3
39 AT3G21670 Major facilitator superfamily protein 0.64 0.31 -0.32
40 AT1G51340 MATE efflux family protein 0.64 0.31 -0.3
41 AT2G03150 ATP/GTP-binding protein family embryo defective 1579 0.64 0.3 -0.29
42 AT1G35620 PDI-like 5-2 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 8, PDI-like
5-2, PROTEIN DISULFIDE ISOMERASE
8, PDI-like 5-2		 -0.64 0.33 -0.32
43 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.63 0.32 -0.31
44 AT4G34140 D111/G-patch domain-containing protein 0.63 0.31 -0.34
45 AT1G13670 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.33 -0.29
46 AT3G04030 Homeodomain-like superfamily protein 0.62 0.31 -0.34
47 AT2G32950 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS THALIANA CONSTITUTIVE
PHOTOMORPHOGENIC 1, CONSTITUTIVE
PHOTOMORPHOGENIC 1, DEETIOLATED
MUTANT 340, EMBRYO DEFECTIVE 168,
FUSCA 1		 0.62 0.3 -0.31
48 AT1G11680 CYTOCHROME P450 51G1 CYTOCHROME P450 51, CYTOCHROME
P450 51A2, CYTOCHROME P450 51G1,
embryo defective 1738		 -0.62 0.33 -0.34
49 AT3G57300 INO80 ortholog INO80 ORTHOLOG, INO80 ortholog 0.62 0.32 -0.31
50 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.29 -0.32
51 AT2G42330 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 0.62 0.31 -0.31
52 AT5G39600 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53,
mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50
proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa -
6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink).		 -0.62 0.33 -0.33
53 AT5G22450 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.62 0.32 -0.32
54 AT2G35270 Predicted AT-hook DNA-binding family protein GIANT KILLER -0.62 0.32 -0.32
55 AT4G29870 Oligosaccharyltransferase complex/magnesium transporter
family protein		 -0.62 0.29 -0.29
56 AT1G10570 Cysteine proteinases superfamily protein OVERLY TOLERANT TO SALT 2, UB-LIKE
PROTEASE 1C		 0.61 0.31 -0.31
57 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 -0.61 0.32 -0.32
58 AT1G78150 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G35780.1); Has 152 Blast hits
to 146 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 2; Plants - 149; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.32
59 AT4G33210 F-box family protein SLOW MOTION 0.61 0.31 -0.31
60 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 -0.61 0.32 -0.3
61 AT5G37370 PRP38 family protein ATSRL1 0.61 0.31 -0.34
62 AT5G06660 Protein of unknown function DUF106, transmembrane -0.61 0.31 -0.32
63 AT5G58510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G55060.2); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.6 0.31 -0.32
64 AT3G60190 DYNAMIN-like 1E DYNAMIN-like 1E, ARABIDOPSIS
DYNAMIN-LIKE 4, DYNAMIN-LIKE
PROTEIN 2, DYNAMIN-like 1E,
DYNAMIN-RELATED PROTEIN 1E,
ENHANCED DISEASE RESISTANCE 3		 0.6 0.31 -0.33
65 AT3G53090 ubiquitin-protein ligase 7 ubiquitin-protein ligase 7 0.6 0.3 -0.31
66 AT4G25570 Cytochrome b561/ferric reductase transmembrane protein
family		 ACYB-2 -0.6 0.32 -0.32
67 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 0.6 0.3 -0.3
68 AT1G54260 winged-helix DNA-binding transcription factor family
protein		 0.6 0.31 -0.32
69 AT4G02640 bZIP transcription factor family protein Arabidopsis thaliana basic leucine
zipper 10, BZO2H1		 0.6 0.3 -0.29
70 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.6 0.31 -0.32
71 AT3G24760 Galactose oxidase/kelch repeat superfamily protein 0.6 0.31 -0.31
72 AT5G22760 PHD finger family protein 0.6 0.34 -0.3
73 AT3G17920 Outer arm dynein light chain 1 protein 0.6 0.32 -0.31
74 AT5G64840 general control non-repressible 5 ATP-binding cassette F5, general
control non-repressible 5, general
control non-repressible 5		 0.6 0.35 -0.32
75 AT3G57570 ARM repeat superfamily protein 0.59 0.34 -0.32
76 AT5G22400 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 -0.59 0.34 -0.29
77 AT3G54230 suppressor of abi3-5 suppressor of abi3-5 0.59 0.3 -0.31
78 AT2G15530 RING/U-box superfamily protein 0.59 0.31 -0.31
79 AT1G75410 BEL1-like homeodomain 3 BEL1-like homeodomain 3 0.59 0.3 -0.31
80 AT2G26000 zinc finger (C3HC4-type RING finger) family protein BRAP2 RING ZnF UBP
domain-containing protein 2		 0.59 0.31 -0.33
81 AT1G17350 NADH:ubiquinone oxidoreductase intermediate-associated
protein 30		 -0.59 0.31 -0.32
82 AT2G13370 chromatin remodeling 5 chromatin remodeling 5 0.59 0.3 -0.3
83 AT1G29990 prefoldin 6 prefoldin 6 -0.58 0.33 -0.32
84 AT5G59380 methyl-CPG-binding domain 6 ATMBD6, methyl-CPG-binding domain
6		 -0.58 0.32 -0.32
85 AT5G60980 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 -0.58 0.32 -0.31
86 AT1G27090 glycine-rich protein -0.58 0.31 -0.34
87 AT2G46000 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Mesoderm development candidate 2 (InterPro:IPR019330); Has
31 Blast hits to 31 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.33 -0.34
88 AT5G20950 Glycosyl hydrolase family protein -0.58 0.31 -0.31
89 AT5G05950 maternal effect embryo arrest 60 maternal effect embryo arrest 60 -0.58 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
90 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis 0.73 0.48 -0.44 C0193
91 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		0.68 0.45 -0.44 C0107
92 C0177 MST_2429.6 - - - 0.67 0.45 -0.44