AT2G46830 : AtCCA1
Query Information
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AGICode AT2G46830
Description circadian clock associated 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G46830 circadian clock associated 1 AtCCA1, circadian clock associated
1		 1 0.33 -0.32
2 AT2G21320 B-box zinc finger family protein 0.89 0.31 -0.32
3 AT4G32190 Myosin heavy chain-related protein 0.82 0.31 -0.31
4 AT3G12320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits
to 102 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.81 0.31 -0.32
5 AT2G31380 salt tolerance homologue salt tolerance homologue 0.8 0.29 -0.3
6 AT5G06980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G12320.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.8 0.33 -0.31
7 AT3G47500 cycling DOF factor 3 cycling DOF factor 3 0.8 0.29 -0.32
8 AT3G17130 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.79 0.32 -0.31
9 AT1G06040 B-box zinc finger family protein B-box domain protein 24, SALT
TOLERANCE		 0.79 0.33 -0.31
10 AT5G64170 dentin sialophosphoprotein-related 0.78 0.31 -0.34
11 AT1G17050 solanesyl diphosphate synthase 2 solanesyl diphosphate synthase 2 0.78 0.3 -0.29
12 AT4G31140 O-Glycosyl hydrolases family 17 protein 0.77 0.32 -0.33
13 AT5G63380 AMP-dependent synthetase and ligase family protein 0.76 0.33 -0.33
14 AT5G02810 pseudo-response regulator 7 APRR7, pseudo-response regulator 7 0.76 0.33 -0.31
15 AT2G35960 NDR1/HIN1-like 12 NDR1/HIN1-like 12 0.74 0.32 -0.33
16 AT5G35970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.74 0.32 -0.31
17 AT2G04940 scramblase-related -0.73 0.29 -0.32
18 AT5G57660 CONSTANS-like 5 ATCOL5, CONSTANS-like 5 0.72 0.31 -0.31
19 AT1G48100 Pectin lyase-like superfamily protein 0.72 0.28 -0.32
20 AT5G62430 cycling DOF factor 1 cycling DOF factor 1 0.72 0.33 -0.29
21 AT1G14580 C2H2-like zinc finger protein 0.72 0.31 -0.33
22 AT4G16650 O-fucosyltransferase family protein 0.72 0.33 -0.29
23 AT4G18390 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor
2		 TCP2, TEOSINTE BRANCHED 1,
cycloidea and PCF transcription
factor 2		 0.72 0.29 -0.3
24 AT5G25770 alpha/beta-Hydrolases superfamily protein -0.72 0.33 -0.32
25 AT5G26600 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.71 0.29 -0.31
26 AT5G07860 HXXXD-type acyl-transferase family protein -0.71 0.29 -0.31
27 AT2G34460 NAD(P)-binding Rossmann-fold superfamily protein 0.71 0.33 -0.31
28 AT3G19340 Protein of unknown function (DUF3754) 0.7 0.32 -0.32
29 AT2G29650 phosphate transporter 4;1 anion transporter 1, phosphate
transporter 4;1		 0.7 0.33 -0.32
30 AT3G47295 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.7 0.28 -0.3
31 AT1G18660 zinc finger (C3HC4-type RING finger) family protein 0.7 0.29 -0.3
32 AT1G06980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sepal, male gametophyte,
carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.29 -0.32
33 AT4G39800 myo-inositol-1-phosphate synthase 1 INOSITOL 3-PHOSPHATE SYNTHASE 1,
MYO-INOSITOL-1-PHOSPHATE SYNTHASE
1, MI-1-P SYNTHASE, D-myo-Inositol
3-Phosphate Synthase 1,
myo-inositol-1-phosphate synthase
1		 0.7 0.32 -0.35
34 AT4G23630 VIRB2-interacting protein 1 VIRB2-interacting protein 1,
Reticulan like protein B1		 0.69 0.34 -0.31
35 AT2G20400 myb-like HTH transcriptional regulator family protein 0.69 0.32 -0.3
36 AT2G29210 splicing factor PWI domain-containing protein 0.69 0.3 -0.32
37 AT4G36530 alpha/beta-Hydrolases superfamily protein 0.68 0.31 -0.32
38 AT3G20370 TRAF-like family protein -0.68 0.34 -0.3
39 AT3G12280 retinoblastoma-related 1 RETINOBLASTOMA-RELATED PROTEIN 1,
RB, RETINOBLASTOMA 1,
RETINOBLASTOMA-RELATED,
retinoblastoma-related 1		 0.68 0.31 -0.32
40 AT4G24960 HVA22 homologue D ARABIDOPSIS THALIANA HVA22
HOMOLOGUE D, HVA22 homologue D		 0.68 0.32 -0.32
41 AT5G21040 F-box protein 2 F-box protein 2 0.68 0.3 -0.34
42 AT2G39010 plasma membrane intrinsic protein 2E PLASMA MEMBRANE INTRINSIC PROTEIN
2;6, plasma membrane intrinsic
protein 2E		 0.68 0.31 -0.31
43 AT2G27110 FAR1-related sequence 3 FAR1-related sequence 3 0.68 0.33 -0.32
44 AT5G62930 SGNH hydrolase-type esterase superfamily protein -0.67 0.3 -0.32
45 AT1G18900 Pentatricopeptide repeat (PPR) superfamily protein 0.67 0.32 -0.31
46 AT3G54500 BEST Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183
Blast hits to 175 proteins in 44 species: Archae - 0;
Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).		 0.67 0.32 -0.32
47 AT1G21790 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 0.67 0.3 -0.3
48 AT3G06650 ATP-citrate lyase B-1 ATP-citrate lyase B-1 0.67 0.31 -0.32
49 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 0.67 0.31 -0.32
50 AT1G05710 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.67 0.31 -0.3
51 AT4G38400 expansin-like A2 expansin-like A2, ATEXPL2, ATHEXP
BETA 2.2, expansin-like A2,
EXPANSIN L2		 0.67 0.32 -0.32
52 AT4G38960 B-box type zinc finger family protein 0.67 0.3 -0.32
53 AT4G12640 RNA recognition motif (RRM)-containing protein 0.66 0.3 -0.31
54 AT1G09350 galactinol synthase 3 galactinol synthase 3, galactinol
synthase 3		 0.66 0.31 -0.33
55 AT3G24190 Protein kinase superfamily protein 0.66 0.31 -0.31
56 AT5G01790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 13 growth stages; Has 121 Blast hits to 121
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.66 0.3 -0.3
57 AT1G18330 Homeodomain-like superfamily protein EARLY-PHYTOCHROME-RESPONSIVE1,
REVEILLE 7		 0.66 0.3 -0.31
58 AT2G01820 Leucine-rich repeat protein kinase family protein 0.66 0.31 -0.31
59 AT5G58870 FTSH protease 9 FTSH protease 9 0.66 0.29 -0.33
60 AT5G10460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.66 0.31 -0.32
61 AT1G67510 Leucine-rich repeat protein kinase family protein 0.66 0.31 -0.32
62 AT1G73350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 46 Blast hits to 46 proteins
in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
- 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4
(source: NCBI BLink).		 0.65 0.3 -0.33
63 AT3G09650 Tetratricopeptide repeat (TPR)-like superfamily protein CRM3, HIGH CHLOROPHYLL
FLUORESCENCE 152		 0.65 0.32 -0.31
64 AT4G23920 UDP-D-glucose/UDP-D-galactose 4-epimerase 2 UDP-GLC 4-EPIMERASE 2,
UDP-D-glucose/UDP-D-galactose
4-epimerase 2		 0.65 0.31 -0.31
65 AT1G59580 mitogen-activated protein kinase homolog 2 mitogen-activated protein kinase
homolog 2, mitogen-activated
protein kinase homolog 2		 -0.65 0.33 -0.3
66 AT5G08240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits
to 69 proteins in 10 species: Archae - 0; Bacteria - 1;
Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.29 -0.33
67 AT5G09880 Splicing factor, CC1-like 0.65 0.32 -0.32
68 AT1G43800 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 -0.64 0.32 -0.33
69 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.64 0.32 -0.3
70 AT2G15970 cold regulated 413 plasma membrane 1 ARABIDOPSIS THALIANA
COLD-REGULATED413 PLASMA MEMBRANE
1, CYCLOPHILLIN 19, cold regulated
413 plasma membrane 1, FL3-5A3,
WCOR413, WCOR413-LIKE		 0.64 0.31 -0.3
71 AT5G17300 Homeodomain-like superfamily protein REVEILLE 1 0.64 0.32 -0.32
72 AT5G04940 SU(VAR)3-9 homolog 1 SU(VAR)3-9 homolog 1 0.64 0.3 -0.3
73 AT5G05460 Glycosyl hydrolase family 85 AtENGase85A,
Endo-beta-N-acetyglucosaminidase
85A		 -0.64 0.31 -0.3
74 AT2G26730 Leucine-rich repeat protein kinase family protein 0.64 0.33 -0.29
75 AT1G23870 trehalose-phosphatase/synthase 9 trehalose-phosphatase/synthase 9,
TREHALOSE -6-PHOSPHATASE SYNTHASE
S9, trehalose-phosphatase/synthase
9		 -0.64 0.3 -0.31
76 AT1G12580 phosphoenolpyruvate carboxylase-related kinase 1 phosphoenolpyruvate
carboxylase-related kinase 1		 0.64 0.35 -0.33
77 AT1G21660 Chaperone DnaJ-domain superfamily protein 0.64 0.33 -0.31
78 AT1G78070 Transducin/WD40 repeat-like superfamily protein 0.64 0.33 -0.34
79 AT2G22540 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 22, SHORT VEGETATIVE
PHASE		 0.63 0.3 -0.34
80 AT3G09540 Pectin lyase-like superfamily protein 0.63 0.3 -0.33
81 AT2G39940 RNI-like superfamily protein CORONATINE INSENSITIVE 1 0.63 0.29 -0.32
82 AT1G07180 alternative NAD(P)H dehydrogenase 1 ARABIDOPSIS THALIANA INTERNAL
NON-PHOSPHORYLATING NAD ( P ) H
DEHYDROGENASE, alternative
NAD(P)H dehydrogenase 1		 0.63 0.31 -0.34
83 AT4G15130 phosphorylcholine cytidylyltransferase2 ATCCT2, phosphorylcholine
cytidylyltransferase2		 0.63 0.32 -0.32
84 AT1G03850 Glutaredoxin family protein glutaredoxin 13, glutaredoxin 13 -0.63 0.31 -0.31
85 AT4G02050 sugar transporter protein 7 sugar transporter protein 7 -0.63 0.31 -0.31
86 AT3G27340 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
oxidation reduction; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine
dioxygenase, N-terminal (InterPro:IPR010376); Has 1035
Blast hits to 1035 proteins in 399 species: Archae - 0;
Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39;
Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).		 -0.63 0.31 -0.32
87 AT1G27030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G27020.1); Has 504 Blast hits
to 502 proteins in 169 species: Archae - 0; Bacteria - 299;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 138 (source: NCBI BLink).		 -0.62 0.33 -0.3
88 AT5G06180 Protein of unknown function (DUF1022) -0.62 0.3 -0.35
89 AT3G27320 alpha/beta-Hydrolases superfamily protein 0.62 0.3 -0.3
90 AT1G63900 E3 Ubiquitin ligase family protein DIAP1-like protein 1 0.62 0.29 -0.32
91 AT5G17030 UDP-glucosyl transferase 78D3 UDP-glucosyl transferase 78D3 0.62 0.31 -0.3
92 AT2G22080 unknown protein; Has 96314 Blast hits to 34847 proteins in
1702 species: Archae - 612; Bacteria - 27969; Metazoa -
24311; Fungi - 12153; Plants - 4409; Viruses - 1572; Other
Eukaryotes - 25288 (source: NCBI BLink).		 0.62 0.32 -0.31
93 AT1G74390 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.62 0.31 -0.31
94 AT2G46610 RNA-binding (RRM/RBD/RNP motifs) family protein arginine/serine-rich splicing
factor 31a, arginine/serine-rich
splicing factor 31a		 -0.62 0.31 -0.3
95 AT3G62690 AtL5 AtL5 0.61 0.29 -0.33
96 AT1G73650 Protein of unknown function (DUF1295) 0.61 0.29 -0.33
97 AT2G28550 related to AP2.7 related to AP2.7, TARGET OF EARLY
ACTIVATION TAGGED (EAT) 1		 0.61 0.31 -0.33
98 AT1G71990 fucosyltransferase 13 ARABIDOPSIS FUCOSYLTRANSFERASE 4,
ATFUT13, FT4-M, FUCTC,
fucosyltransferase 13		 -0.61 0.31 -0.3
99 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.61 0.33 -0.31
100 AT4G08690 Sec14p-like phosphatidylinositol transfer family protein -0.61 0.32 -0.32
101 AT1G55690 Sec14p-like phosphatidylinositol transfer family protein 0.61 0.32 -0.31
102 AT5G52570 beta-carotene hydroxylase 2 B2, BETA CAROTENOID HYDROXYLASE 2,
beta-carotene hydroxylase 2, CHY2		 0.61 0.33 -0.32
103 AT4G23510 Disease resistance protein (TIR-NBS-LRR class) family -0.61 0.33 -0.31
104 AT1G52240 RHO guanyl-nucleotide exchange factor 11 ATROPGEF11, phytochrome
interacting RopGEF 1, RHO
guanyl-nucleotide exchange factor
11		 -0.6 0.31 -0.32
105 AT1G08670 ENTH/VHS family protein -0.59 0.33 -0.32
106 AT1G32120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane; EXPRESSED
IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C
globular stage, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like,
plant mobile domain (InterPro:IPR019557), Protein of
unknown function DUF716 (InterPro:IPR006904); BEST
Arabidopsis thaliana protein match is:
Aminotransferase-like, plant mobile domain family protein
(TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins
in 576 species: Archae - 4; Bacteria - 1182; Metazoa -
7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other
Eukaryotes - 4469 (source: NCBI BLink).		 -0.59 0.31 -0.3
107 AT1G75130 cytochrome P450, family 721, subfamily A, polypeptide 1 cytochrome P450, family 721,
subfamily A, polypeptide 1		 -0.59 0.31 -0.3
108 AT1G65000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits
to 49 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.3 -0.33
109 AT1G23860 RS-containing zinc finger protein 21 RS-containing zinc finger protein
21, RS-containing zinc finger
protein 21, RS-containing zinc
finger protein 21, SRZ-21, SRZ21		 -0.58 0.31 -0.32
110 AT5G42840 Cysteine/Histidine-rich C1 domain family protein -0.58 0.31 -0.32
111 AT1G55310 SC35-like splicing factor 33 SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33,
SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33		 -0.58 0.31 -0.3
112 AT2G24550 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits
to 219 proteins in 33 species: Archae - 0; Bacteria - 0;
Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other
Eukaryotes - 17 (source: NCBI BLink).		 -0.58 0.33 -0.32
113 AT1G53990 GDSL-motif lipase 3 GDSL-motif lipase 3 -0.58 0.3 -0.3
114 AT1G01190 cytochrome P450, family 78, subfamily A, polypeptide 8 cytochrome P450, family 78,
subfamily A, polypeptide 8		 -0.58 0.29 -0.31
115 AT5G51170 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0406
(InterPro:IPR019146); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.57 0.31 -0.31
116 AT5G54250 cyclic nucleotide-gated cation channel 4 cyclic nucleotide-gated cation
channel 4, cyclic nucleotide-gated
cation channel 4, DEFENSE, NO
DEATH 2, HLM1		 -0.56 0.3 -0.32
117 AT1G06160 octadecanoid-responsive Arabidopsis AP2/ERF 59 octadecanoid-responsive
Arabidopsis AP2/ERF 59		 -0.55 0.32 -0.32
118 AT4G16790 hydroxyproline-rich glycoprotein family protein -0.54 0.3 -0.32
119 AT2G33480 NAC domain containing protein 41 NAC domain containing protein 41,
NAC domain containing protein 41		 -0.54 0.33 -0.32
120 AT3G25150 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 -0.54 0.32 -0.34
121 AT5G38195 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.53 0.31 -0.31
122 AT3G04660 F-box and associated interaction domains-containing protein -0.53 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
123 C0093 Galactinol dihydrate - Galactinol galactosylcyclitol biosynthesis,
stachyose biosynthesis,
ajugose biosynthesis I (galactinol-dependent) 		0.75 0.44 -0.46 C0093