AT2G45890 : RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4
Query Information
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AGICode AT2G45890
Description RHO guanyl-nucleotide exchange factor 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G45890 RHO guanyl-nucleotide exchange factor 4 RHO GUANYL-NUCLEOTIDE EXCHANGE
FACTOR 4, ROOT HAIR SPECIFIC 11,
RHO guanyl-nucleotide exchange
factor 4		 1 0.3 -0.31
2 AT1G69480 EXS (ERD1/XPR1/SYG1) family protein -0.8 0.33 -0.3
3 AT5G17850 Sodium/calcium exchanger family protein -0.8 0.3 -0.31
4 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.78 0.32 -0.31
5 AT1G63720 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in
96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi
- 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79
(source: NCBI BLink).		 -0.78 0.31 -0.3
6 AT3G27210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25
species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7;
Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source:
NCBI BLink).		 -0.78 0.31 -0.32
7 AT3G06070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits
to 33 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.77 0.32 -0.31
8 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.77 0.33 -0.35
9 AT5G49280 hydroxyproline-rich glycoprotein family protein -0.77 0.3 -0.32
10 AT5G15350 early nodulin-like protein 17 AtENODL17, early nodulin-like
protein 17		 0.76 0.31 -0.31
11 AT2G30410 tubulin folding cofactor A (KIESEL) KIESEL, TUBULIN FOLDING FACTOR A 0.75 0.3 -0.3
12 AT1G21480 Exostosin family protein 0.75 0.33 -0.29
13 AT1G23480 cellulose synthase-like A3 cellulose synthase-like A3,
ATCSLA3, CSLA03, cellulose
synthase-like A3, CELLULOSE
SYNTHASE-LIKE A3		 0.75 0.33 -0.32
14 AT4G32330 TPX2 (targeting protein for Xklp2) protein family 0.75 0.3 -0.29
15 AT5G15600 SPIRAL1-like4 SPIRAL1-like4 0.75 0.31 -0.31
16 AT1G33811 GDSL-like Lipase/Acylhydrolase superfamily protein 0.74 0.32 -0.32
17 AT1G18640 3-phosphoserine phosphatase 3-phosphoserine phosphatase 0.74 0.31 -0.33
18 AT2G42900 Plant basic secretory protein (BSP) family protein 0.74 0.3 -0.33
19 AT1G62480 Vacuolar calcium-binding protein-related 0.74 0.3 -0.32
20 AT5G27450 mevalonate kinase mevalonate kinase, MEVALONATE
KINASE		 0.74 0.31 -0.31
21 AT5G51460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 ATTPPA 0.74 0.29 -0.29
22 AT1G80820 cinnamoyl coa reductase ATCCR2, cinnamoyl coa reductase -0.73 0.31 -0.31
23 AT1G75840 RAC-like GTP binding protein 5 RAC-like GTP binding protein 5,
ARABIDOPSIS THALIANA
GERANYLGERANYLATED PROTEIN 3,
RHO-LIKE GTP BINDING PROTEIN 4,
RHO-LIKE GTP BINDING PROTEIN 4		 0.72 0.33 -0.3
24 AT3G48750 cell division control 2 cell division control 2, CDC2A,
CDC2AAT, CDK2, CDKA1, CDKA;1		 0.72 0.31 -0.31
25 AT3G06750 hydroxyproline-rich glycoprotein family protein 0.72 0.31 -0.29
26 AT5G44020 HAD superfamily, subfamily IIIB acid phosphatase 0.72 0.33 -0.31
27 AT3G50560 NAD(P)-binding Rossmann-fold superfamily protein 0.71 0.31 -0.32
28 AT1G33240 GT-2-like 1 GT2-LIKE 1, GT-2-like 1 0.71 0.32 -0.34
29 AT5G60490 FASCICLIN-like arabinogalactan-protein 12 FASCICLIN-like
arabinogalactan-protein 12		 0.71 0.33 -0.32
30 AT5G49170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G06840.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.71 0.32 -0.29
31 AT3G58120 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP61, BZIP61 0.71 0.3 -0.32
32 AT5G67340 ARM repeat superfamily protein -0.7 0.31 -0.34
33 AT5G10170 myo-inositol-1-phosphate synthase 3 MYO-INOSITOL-1-PHOSTPATE SYNTHASE
3, myo-inositol-1-phosphate
synthase 3		 0.7 0.32 -0.3
34 AT5G50000 Protein kinase superfamily protein 0.7 0.32 -0.32
35 AT2G46225 ABI-1-like 1 ABI-1-like 1 0.7 0.33 -0.3
36 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A 0.7 0.33 -0.33
37 AT4G17870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1,
regulatory component of ABA
receptor 11		 0.7 0.32 -0.31
38 AT3G01120 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 AtCGS1, A. thaliana cystathionine
gamma-synthetase 1, CYSTATHIONINE
GAMMA-SYNTHASE, CYSTATHIONINE
GAMMA-SYNTHASE 1, METHIONINE
OVERACCUMULATION 1		 0.7 0.32 -0.3
39 AT5G54530 Protein of unknown function, DUF538 0.7 0.31 -0.3
40 AT1G22790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast
hits to 67 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.31 -0.29
41 AT2G30520 Phototropic-responsive NPH3 family protein ROOT PHOTOTROPISM 2 0.7 0.31 -0.32
42 AT1G10020 Protein of unknown function (DUF1005) 0.69 0.29 -0.31
43 AT2G20930 SNARE-like superfamily protein 0.69 0.33 -0.31
44 AT1G04220 3-ketoacyl-CoA synthase 2 3-ketoacyl-CoA synthase 2 -0.69 0.3 -0.34
45 AT1G65690 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.69 0.3 -0.31
46 AT1G06830 Glutaredoxin family protein 0.68 0.33 -0.32
47 AT3G58550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.68 0.34 -0.31
48 AT4G09990 Protein of unknown function (DUF579) 0.68 0.31 -0.33
49 AT1G03790 Zinc finger C-x8-C-x5-C-x3-H type family protein SOMNUS -0.68 0.33 -0.3
50 AT5G07330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.68 0.32 -0.31
51 AT5G10700 Peptidyl-tRNA hydrolase II (PTH2) family protein 0.68 0.3 -0.3
52 AT3G27870 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.68 0.3 -0.32
53 AT5G24580 Heavy metal transport/detoxification superfamily protein 0.68 0.31 -0.3
54 AT4G20870 fatty acid hydroxylase 2 ARABIDOPSIS FATTY ACID HYDROXYLASE
2, fatty acid hydroxylase 2		 0.67 0.34 -0.32
55 AT2G35300 Late embryogenesis abundant protein, group 1 protein late embryogenesis abundant 4-2,
late embryogenesis abundant 18,
late embryogenesis abundant 4-2		 -0.67 0.31 -0.32
56 AT4G34960 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.67 0.33 -0.32
57 AT2G21200 SAUR-like auxin-responsive protein family 0.67 0.31 -0.32
58 AT1G78610 mechanosensitive channel of small conductance-like 6 mechanosensitive channel of small
conductance-like 6		 -0.67 0.3 -0.34
59 AT1G79270 evolutionarily conserved C-terminal region 8 evolutionarily conserved
C-terminal region 8		 -0.67 0.34 -0.3
60 AT1G12880 nudix hydrolase homolog 12 nudix hydrolase homolog 12, nudix
hydrolase homolog 12		 -0.67 0.31 -0.31
61 AT3G60510 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.67 0.31 -0.31
62 AT2G38580 Mitochondrial ATP synthase D chain-related protein 0.66 0.32 -0.31
63 AT5G48485 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 DEFECTIVE IN INDUCED RESISTANCE 1 0.66 0.32 -0.32
64 AT1G74770 zinc ion binding 0.66 0.3 -0.33
65 AT5G67560 ADP-ribosylation factor-like A1D ADP-ribosylation factor-like A1D,
ADP-ribosylation factor-like A1D		 0.66 0.3 -0.31
66 AT1G61890 MATE efflux family protein -0.66 0.33 -0.32
67 AT2G21180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits
to 124 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.32 -0.32
68 AT1G13320 protein phosphatase 2A subunit A3 protein phosphatase 2A subunit A3 0.66 0.31 -0.31
69 AT3G05730 Encodes a defensin-like (DEFL) family protein. 0.66 0.3 -0.3
70 AT5G53890 phytosylfokine-alpha receptor 2 AtPSKR2, phytosylfokine-alpha
receptor 2		 -0.65 0.31 -0.32
71 AT5G06760 Late Embryogenesis Abundant 4-5 Late Embryogenesis Abundant 4-5,
Late Embryogenesis Abundant 4-5		 -0.65 0.31 -0.31
72 AT1G69600 zinc finger homeodomain 1 ARABIDOPSIS THALIANA HOMEOBOX
PROTEIN 29, zinc finger
homeodomain 1, ZINC FINGER
HOMEODOMAIN 11		 -0.65 0.32 -0.33
73 AT3G62090 phytochrome interacting factor 3-like 2 PHYTOCHROME-INTERACTING FACTOR 6,
phytochrome interacting factor
3-like 2		 -0.65 0.32 -0.32
74 AT1G66950 pleiotropic drug resistance 11 ATP-binding cassette G39,
PLEIOTROPIC DRUG RESISTANCE 11,
pleiotropic drug resistance 11		 -0.64 0.32 -0.32
75 AT2G16890 UDP-Glycosyltransferase superfamily protein -0.64 0.33 -0.31
76 AT5G43450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.3 -0.32
77 AT5G07990 Cytochrome P450 superfamily protein CYTOCHROME P450 75B1, D501,
TRANSPARENT TESTA 7		 -0.64 0.31 -0.31
78 AT5G58700 phosphatidylinositol-speciwc phospholipase C4 ATPLC4,
phosphatidylinositol-speciwc
phospholipase C4		 -0.63 0.31 -0.31
79 AT4G21020 Late embryogenesis abundant protein (LEA) family protein -0.63 0.33 -0.3
80 AT5G66780 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.31 -0.32
81 AT3G03170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits
to 184 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.31
82 AT4G20880 ethylene-responsive nuclear protein / ethylene-regulated
nuclear protein (ERT2)		 -0.63 0.33 -0.3
83 AT3G12580 heat shock protein 70 ARABIDOPSIS HEAT SHOCK PROTEIN 70,
heat shock protein 70		 -0.63 0.34 -0.32
84 AT4G12760 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.31 -0.31
85 AT2G41280 late embryogenesis abundant protein (M10) / LEA protein M10 ATM10, M10 -0.63 0.29 -0.33
86 AT4G30360 cyclic nucleotide-gated channel 17 CYCLIC NUCLEOTIDE-GATED CHANNEL
17, cyclic nucleotide-gated
channel 17		 -0.62 0.3 -0.31
87 AT4G36740 homeobox protein 40 homeobox protein 40, HB-5,
homeobox protein 40		 -0.61 0.29 -0.34
88 AT5G43930 Transducin family protein / WD-40 repeat family protein -0.61 0.3 -0.32
89 AT1G45616 receptor like protein 6 receptor like protein 6, receptor
like protein 6		 -0.61 0.3 -0.29
90 AT5G05340 Peroxidase superfamily protein -0.61 0.32 -0.32
91 AT2G39710 Eukaryotic aspartyl protease family protein -0.61 0.32 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0017 sn-Glycero-3-phosphocholine sn-Glycero-3-phosphocholine L-1-Glycero-3-phosphocholine - -0.84 0.45 -0.44 C0017