AT2G18880 : vernalization5/VIN3-like 2
Query Information
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AGICode AT2G18880
Description vernalization5/VIN3-like
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G18880 vernalization5/VIN3-like vernalization5/VIN3-like 2,
VIN3-like 3		 1 0.33 -0.31
2 AT5G42440 Protein kinase superfamily protein 0.74 0.32 -0.32
3 AT3G45320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G60330.1); Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.66 0.32 -0.3
4 AT3G29796 unknown protein; Has 28 Blast hits to 20 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink).		 -0.6 0.29 -0.31
5 AT3G16380 poly(A) binding protein 6 poly(A) binding protein 6 -0.58 0.3 -0.3
6 AT2G35670 VEFS-Box of polycomb protein FERTILIZATION-INDEPENDENT
ENDOSPERM 2, FERTILIZATION
INDEPENDENT SEED 2		 -0.58 0.3 -0.31
7 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.57 0.32 -0.32
8 AT4G36170 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.31 -0.3
9 AT3G32080 transposable element gene -0.56 0.31 -0.34
10 AT2G24950 Protein of Unknown Function (DUF239) 0.56 0.33 -0.3
11 AT4G07840 transposable element gene -0.56 0.3 -0.31
12 AT1G62260 mitochondrial editing factor 9 mitochondrial editing factor 9 -0.55 0.32 -0.34
13 AT2G01280 Cyclin/Brf1-like TBP-binding protein maternal effect embryo arrest 65 -0.55 0.31 -0.32
14 AT3G30400 transposable element gene 0.55 0.33 -0.32
15 AT1G02680 TBP-associated factor 13 TBP-associated factor 13 0.54 0.31 -0.32
16 AT3G24540 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 3, proline-rich
extensin-like receptor kinase 3		 -0.54 0.33 -0.33
17 AT1G50140 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.54 0.31 -0.31
18 AT1G55410 pseudogene, CHP-rich zinc finger protein, putative, similar
to putative CHP-rich zinc finger protein GB:CAB77744
GI:7268217 from (Arabidopsis thaliana)		 -0.54 0.32 -0.31
19 AT3G29080 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.54 0.33 -0.32
20 AT4G00050 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 unfertilized embryo sac 10 0.53 0.3 -0.3
21 AT1G30560 Major facilitator superfamily protein glycerol-3-phosphate permease 3,
glycerol-3-phosphate permease 3		 -0.53 0.32 -0.33
22 AT5G56070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G56050.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.53 0.31 -0.31
23 AT4G28420 Tyrosine transaminase family protein -0.52 0.33 -0.31
24 AT2G07430 transposable element gene 0.52 0.32 -0.31
25 AT4G36560 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.52 0.32 -0.31
26 AT1G34090 transposable element gene 0.51 0.32 -0.33
27 AT4G13190 Protein kinase superfamily protein 0.51 0.33 -0.33
28 AT4G04440 transposable element gene 0.51 0.32 -0.32
29 AT3G51570 Disease resistance protein (TIR-NBS-LRR class) family -0.51 0.33 -0.29
30 AT2G23210 UDP-Glycosyltransferase superfamily protein -0.51 0.33 -0.34
31 AT5G65850 F-box and associated interaction domains-containing protein 0.51 0.32 -0.3
32 AT3G46920 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.51 0.33 -0.32
33 AT4G02750 Tetratricopeptide repeat (TPR)-like superfamily protein -0.51 0.29 -0.32
34 AT1G21220 transposable element gene 0.5 0.32 -0.29
35 AT3G55780 Glycosyl hydrolase superfamily protein -0.5 0.3 -0.31
36 AT3G66652 fip1 motif-containing protein -0.5 0.3 -0.32
37 AT1G58160 Mannose-binding lectin superfamily protein 0.5 0.3 -0.32
38 AT5G43790 Pentatricopeptide repeat (PPR) superfamily protein -0.5 0.33 -0.32
39 AT4G10070 KH domain-containing protein -0.5 0.31 -0.33
40 AT4G21050 Dof-type zinc finger domain-containing protein -0.49 0.32 -0.32
41 AT2G07300 transposable element gene 0.49 0.32 -0.3
42 AT5G24910 cytochrome P450, family 714, subfamily A, polypeptide 1 cytochrome P450, family 714,
subfamily A, polypeptide 1,
EUI-like p450 A1		 -0.49 0.29 -0.32
43 AT2G02640 Cysteine/Histidine-rich C1 domain family protein 0.49 0.31 -0.31
44 AT1G36000 LOB domain-containing protein 5 LOB domain-containing protein 5 0.48 0.31 -0.31
45 AT4G14820 Pentatricopeptide repeat (PPR) superfamily protein -0.48 0.32 -0.31
46 AT2G03180 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.48 0.31 -0.33
47 AT1G20735 F-box and associated interaction domains-containing protein -0.47 0.31 -0.31
48 AT1G22910 RNA-binding (RRM/RBD/RNP motifs) family protein 0.47 0.32 -0.32
49 AT5G54095 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis, C globular stage,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27580.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.46 0.3 -0.31
50 AT3G01175 Protein of unknown function (DUF1666) 0.46 0.3 -0.32
51 AT5G04640 AGAMOUS-like 99 AGAMOUS-like 99 -0.45 0.28 -0.32
52 AT5G28130 transposable element gene 0.44 0.3 -0.33
53 AT1G71120 GDSL-motif lipase/hydrolase 6 GDSL-motif lipase/hydrolase 6 0.44 0.32 -0.32
54 AT3G30450 transposable element gene 0.44 0.3 -0.3
55 AT3G52160 3-ketoacyl-CoA synthase 15 3-ketoacyl-CoA synthase 15 0.44 0.31 -0.32
56 AT5G64210 alternative oxidase 2 alternative oxidase 2 0.44 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
57 C0180 MST_2539.9 - - - -0.72 0.43 -0.46
58 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		-0.53 0.32 -0.33 C0101