AT2G39580 : -
Query Information
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AGICode AT2G39580
Description CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39580 CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain
(InterPro:IPR019607); Has 249 Blast hits to 219 proteins in
85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi
- 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18
(source: NCBI BLink).		 1 0.31 -0.33
2 AT2G17975 zinc finger (Ran-binding) family protein 0.75 0.31 -0.32
3 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein 0.74 0.31 -0.3
4 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein -0.73 0.32 -0.32
5 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 0.72 0.31 -0.31
6 AT3G29390 RS2-interacting KH protein RS2-interacting KH protein 0.71 0.3 -0.34
7 AT2G23310 Rer1 family protein ATRER1C1 -0.71 0.32 -0.33
8 AT1G70620 cyclin-related 0.71 0.31 -0.31
9 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.71 0.29 -0.31
10 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 0.71 0.3 -0.3
11 AT2G38780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi
- 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 0.7 0.32 -0.32
12 AT3G04780 Protein of unknown function (DUF1000) -0.7 0.32 -0.34
13 AT1G73250 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 ACTIVATING TRANSCRIPTION FACTOR 5,
GDP-4-keto-6-deoxymannose-3,5-epim
erase-4-reductase 1		 -0.7 0.29 -0.32
14 AT1G52570 phospholipase D alpha 2 phospholipase D alpha 2 0.7 0.31 -0.29
15 AT3G48190 ataxia-telangiectasia mutated ARABIDOPSIS THALIANA
ATAXIA-TELANGIECTASIA MUTATED,
ataxia-telangiectasia mutated, pcd
in male gametogenesis 1		 0.7 0.32 -0.31
16 AT2G22530 Alkaline-phosphatase-like family protein 0.7 0.31 -0.34
17 AT5G09410 ethylene induced calmodulin binding protein calmodulin-binding transcription
activator 1, ethylene induced
calmodulin binding protein		 0.7 0.32 -0.3
18 AT5G65820 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.3 -0.33
19 ATCG00760 ribosomal protein L36 ribosomal protein L36 0.69 0.32 -0.28
20 AT3G57470 Insulinase (Peptidase family M16) family protein 0.69 0.34 -0.29
21 AT4G03205 Coproporphyrinogen III oxidase hemf2 0.69 0.3 -0.31
22 AT5G55940 Uncharacterised protein family (UPF0172) embryo defective 2731 -0.69 0.32 -0.33
23 AT5G08210 MIR834a; miRNA microRNA834A 0.69 0.31 -0.33
24 AT3G25510 disease resistance protein (TIR-NBS-LRR class), putative -0.68 0.32 -0.33
25 ATCG00770 ribosomal protein S8 ribosomal protein S8 0.68 0.32 -0.31
26 AT1G26580 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: ELM2 domain-containing protein
(TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.29 -0.32
27 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.68 0.32 -0.31
28 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.68 0.32 -0.31
29 AT2G23740 nucleic acid binding;sequence-specific DNA binding
transcription factors;zinc ion binding		 0.68 0.32 -0.3
30 AT5G63400 adenylate kinase 1 adenylate kinase 1 -0.68 0.33 -0.31
31 AT2G27980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.68 0.32 -0.31
32 AT3G01320 SIN3-like 1 SIN3-like 1 0.67 0.34 -0.32
33 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR -0.67 0.3 -0.32
34 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 0.67 0.32 -0.33
35 AT2G28070 ABC-2 type transporter family protein ATP-binding cassette G3 0.67 0.32 -0.32
36 AT2G30050 transducin family protein / WD-40 repeat family protein -0.67 0.33 -0.33
37 AT1G02360 Chitinase family protein -0.67 0.3 -0.31
38 AT5G54140 IAA-leucine-resistant (ILR1)-like 3 IAA-leucine-resistant (ILR1)-like
3		 -0.67 0.33 -0.33
39 AT1G19485 Transducin/WD40 repeat-like superfamily protein 0.67 0.32 -0.34
40 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 0.67 0.33 -0.33
41 AT5G15540 PHD finger family protein ARABIDOPSIS THALIANA
SISTER-CHROMATID COHESION 2,
EMBRYO DEFECTIVE 2773,
SISTER-CHROMATID COHESION 2		 0.66 0.33 -0.31
42 AT5G59880 actin depolymerizing factor 3 actin depolymerizing factor 3 -0.66 0.33 -0.3
43 AT3G47980 Integral membrane HPP family protein -0.66 0.32 -0.3
44 AT5G39320 UDP-glucose 6-dehydrogenase family protein -0.66 0.31 -0.3
45 AT3G07000 Cysteine/Histidine-rich C1 domain family protein -0.66 0.33 -0.31
46 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 0.66 0.32 -0.31
47 AT3G48750 cell division control 2 cell division control 2, CDC2A,
CDC2AAT, CDK2, CDKA1, CDKA;1		 -0.65 0.34 -0.31
48 AT1G14660 Na+/H+ exchanger 8 Na+/H+ exchanger 8, Na+/H+
exchanger 8, SODIUM HYDROGEN
EXCHANGER 8		 0.65 0.32 -0.34
49 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3		 ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3		 0.65 0.31 -0.31
50 AT3G32060 transposable element gene -0.65 0.33 -0.31
51 AT1G74840 Homeodomain-like superfamily protein -0.65 0.32 -0.3
52 AT2G43880 Pectin lyase-like superfamily protein -0.64 0.33 -0.32
53 AT1G71490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.64 0.31 -0.32
54 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 0.64 0.31 -0.35
55 AT3G16220 Predicted eukaryotic LigT 0.64 0.31 -0.33
56 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 0.64 0.32 -0.3
57 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 -0.64 0.33 -0.32
58 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.64 0.32 -0.29
59 AT4G04150 transposable element gene 0.64 0.32 -0.31
60 AT1G05670 Pentatricopeptide repeat (PPR-like) superfamily protein 0.64 0.32 -0.33
61 AT5G05310 TLC ATP/ADP transporter 0.64 0.32 -0.3
62 AT1G54240 winged-helix DNA-binding transcription factor family
protein		 -0.64 0.34 -0.31
63 AT2G42370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits
to 191 proteins in 60 species: Archae - 3; Bacteria - 23;
Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other
Eukaryotes - 64 (source: NCBI BLink).		 0.64 0.3 -0.3
64 AT4G00040 Chalcone and stilbene synthase family protein 0.63 0.33 -0.31
65 AT5G16180 ortholog of maize chloroplast splicing factor CRS1 ARABIDOPSIS ORTHOLOG OF MAIZE
CHLOROPLAST SPLICING FACTOR CRS1,
ortholog of maize chloroplast
splicing factor CRS1		 0.63 0.31 -0.32
66 AT3G50870 GATA type zinc finger transcription factor family protein GATA TRANSCRIPTION FACTOR 18,
HANABA TANARU, MONOPOLE		 -0.63 0.31 -0.3
67 AT5G45610 protein dimerizations SENSITIVE TO UV 2 0.63 0.32 -0.31
68 AT2G21490 dehydrin LEA dehydrin LEA 0.63 0.31 -0.32
69 AT5G57500 Galactosyltransferase family protein -0.63 0.3 -0.32
70 AT1G34280 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.32 -0.3
71 AT3G50010 Cysteine/Histidine-rich C1 domain family protein -0.63 0.32 -0.32
72 AT1G26960 homeobox protein 23 homeobox protein 23, homeobox
protein 23		 -0.63 0.3 -0.32
73 AT3G19610 Plant protein of unknown function (DUF936) -0.63 0.33 -0.33
74 AT1G20200 PAM domain (PCI/PINT associated module) protein EMBRYO DEFECTIVE 2719, HAPLESS 15 -0.62 0.3 -0.29
75 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.29
76 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 0.62 0.32 -0.31
77 AT5G64710 Putative endonuclease or glycosyl hydrolase -0.62 0.31 -0.32
78 AT2G15860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.32 -0.35
79 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE 0.62 0.31 -0.32
80 AT5G42420 Nucleotide-sugar transporter family protein -0.62 0.32 -0.31
81 AT1G22860 Vacuolar sorting protein 39 0.62 0.31 -0.29
82 AT1G05720 selenoprotein family protein -0.62 0.31 -0.34
83 AT2G27120 DNA polymerase epsilon catalytic subunit POL2B, TILTED 2 0.62 0.32 -0.32
84 AT1G17890 NAD(P)-binding Rossmann-fold superfamily protein GER2 -0.62 0.34 -0.31
85 AT5G54220 Cysteine-rich protein 0.62 0.31 -0.31
86 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 -0.61 0.31 -0.32
87 AT5G22700 F-box/RNI-like/FBD-like domains-containing protein 0.61 0.31 -0.3
88 AT4G34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein,
putative / gamma-2 COP, putative		 -0.61 0.31 -0.32
89 AT5G59800 methyl-CPG-binding domain 7 ARABIDOPSIS THALIANA
METHYL-CPG-BINDING DOMAIN 7,
methyl-CPG-binding domain 7		 0.61 0.31 -0.31
90 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 0.61 0.33 -0.31
91 AT1G18580 galacturonosyltransferase 11 galacturonosyltransferase 11 -0.61 0.32 -0.32
92 AT4G14695 Uncharacterised protein family (UPF0041) -0.61 0.33 -0.31
93 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.31 -0.32
94 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.61 0.31 -0.31
95 AT1G23830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G23840.1); Has 57 Blast hits to 52 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.33 -0.3
96 AT1G70990 proline-rich family protein -0.61 0.31 -0.29
97 AT5G08430 SWIB/MDM2 domain;Plus-3;GYF 0.6 0.33 -0.31
98 AT4G22680 myb domain protein 85 myb domain protein 85, myb domain
protein 85		 0.6 0.31 -0.29
99 AT1G64910 UDP-Glycosyltransferase superfamily protein -0.6 0.31 -0.32
100 AT1G31600 RNA-binding (RRM/RBD/RNP motifs) family protein Arabidopsis thaliana tRNA
methyltransferase 9, tRNA
methyltransferase 9		 0.6 0.31 -0.29
101 AT2G31110 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 40 -0.6 0.32 -0.34
102 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 0.6 0.31 -0.29
103 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 0.6 0.31 -0.31
104 AT4G03190 GRR1-like protein 1 AUXIN SIGNALING F BOX PROTEIN 1,
ATGRH1, GRR1-like protein 1		 -0.6 0.32 -0.31
105 AT4G17010 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.31 -0.33
106 AT1G28160 Integrase-type DNA-binding superfamily protein -0.6 0.32 -0.31
107 AT2G32270 zinc transporter 3 precursor zinc transporter 3 precursor -0.6 0.29 -0.35
108 AT4G35200 Arabidopsis protein of unknown function (DUF241) -0.6 0.32 -0.31
109 AT1G58170 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.6 0.33 -0.32
110 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.6 0.31 -0.33
111 AT2G36320 A20/AN1-like zinc finger family protein -0.59 0.31 -0.32
112 AT1G10570 Cysteine proteinases superfamily protein OVERLY TOLERANT TO SALT 2, UB-LIKE
PROTEASE 1C		 0.59 0.3 -0.33
113 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 0.59 0.34 -0.34
114 AT5G29040 pseudogene, hypothetical protein 0.59 0.3 -0.31
115 AT5G25500 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.59 0.31 -0.3
116 AT4G30570 Glucose-1-phosphate adenylyltransferase family protein 0.59 0.3 -0.3
117 AT5G02690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 9 growth stages; Has 2 Blast hits to 2
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.59 0.32 -0.31
118 AT3G23190 HR-like lesion-inducing protein-related -0.59 0.29 -0.33
119 AT4G36280 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 0.59 0.32 -0.29
120 AT5G40200 DegP protease 9 DegP protease 9 -0.58 0.32 -0.31
121 AT5G66280 GDP-D-mannose 4,6-dehydratase 1 GDP-D-mannose 4,6-dehydratase 1 -0.58 0.31 -0.31
122 AT2G20780 Major facilitator superfamily protein -0.58 0.34 -0.34
123 AT4G33370 DEA(D/H)-box RNA helicase family protein -0.58 0.3 -0.31
124 AT4G31320 SAUR-like auxin-responsive protein family -0.58 0.31 -0.3
125 AT4G32390 Nucleotide-sugar transporter family protein -0.58 0.32 -0.32
126 AT2G35910 RING/U-box superfamily protein -0.58 0.3 -0.31
127 AT1G52070 Mannose-binding lectin superfamily protein -0.57 0.31 -0.32
128 AT4G01700 Chitinase family protein -0.57 0.3 -0.32
129 AT4G26260 myo-inositol oxygenase 4 myo-inositol oxygenase 4 -0.57 0.33 -0.31
130 AT1G35183 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.32 -0.3
131 AT3G59920 RAB GDP dissociation inhibitor 2 RAB GDP dissociation inhibitor 2,
RAB GDP dissociation inhibitor 2		 -0.57 0.32 -0.33
132 AT4G35380 SEC7-like guanine nucleotide exchange family protein -0.57 0.31 -0.31
133 AT5G20650 copper transporter 5 copper transporter 5 -0.57 0.32 -0.34
134 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 -0.57 0.31 -0.3
135 AT1G64930 cytochrome P450, family 87, subfamily A, polypeptide 7 cytochrome P450, family 87,
subfamily A, polypeptide 7		 -0.57 0.32 -0.29
136 AT3G17090 Protein phosphatase 2C family protein -0.57 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
137 C0239 Spermidine - Spermidine spermine biosynthesis,
spermine and spermidine degradation III,
beta-alanine biosynthesis I,
hypusine biosynthesis,
spermidine hydroxycinnamic acid conjugates biosynthesis,
spermidine biosynthesis I 		-0.69 0.47 -0.46 C0239