AT2G39140 : PIGMENT DEFECTIVE 328
Query Information
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AGICode AT2G39140
Description pseudouridine synthase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 1 0.32 -0.31
2 AT5G01290 mRNA capping enzyme family protein 0.72 0.32 -0.32
3 AT2G17410 ARID/BRIGHT DNA-binding domain-containing protein 0.71 0.3 -0.31
4 AT2G37520 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.69 0.32 -0.31
5 AT5G42920 THO complex, subunit 5 AtTHO5, THO5 0.69 0.31 -0.31
6 AT5G11540 D-arabinono-1,4-lactone oxidase family protein -0.68 0.32 -0.32
7 AT1G07160 Protein phosphatase 2C family protein 0.68 0.32 -0.3
8 AT4G09510 cytosolic invertase 2 alkaline/neutral invertase I,
cytosolic invertase 2		 0.67 0.32 -0.3
9 AT5G20770 transposable element gene 0.67 0.32 -0.3
10 AT1G30510 root FNR 2 root FNR 2, root FNR 2 -0.67 0.32 -0.34
11 AT2G30470 high-level expression of sugar-inducible gene 2 high-level expression of
sugar-inducible gene 2,
VP1/ABI3-LIKE 1		 0.67 0.32 -0.32
12 AT1G66260 RNA-binding (RRM/RBD/RNP motifs) family protein 0.66 0.3 -0.31
13 AT1G73177 bonsai anaphase-promoting complex 13,
BONSAI		 0.66 0.33 -0.31
14 AT5G62990 Ubiquitin carboxyl-terminal hydrolase family protein embryo defective 1692 0.66 0.33 -0.33
15 AT1G55930 CBS domain-containing protein / transporter associated
domain-containing protein		 0.66 0.34 -0.31
16 AT4G33520 P-type ATP-ase 1 Arabidopsis thaliana heavy metal
ATPase 6, HEAVY METAL ATPASE 6,
P-type ATP-ase 1		 0.65 0.32 -0.32
17 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.65 0.34 -0.31
18 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.65 0.32 -0.3
19 AT4G19600 Cyclin family protein CYCT1;4 0.64 0.32 -0.31
20 AT5G27630 acyl-CoA binding protein 5 acyl-CoA binding protein 5 0.64 0.32 -0.31
21 AT2G40640 RING/U-box superfamily protein -0.64 0.33 -0.35
22 AT1G68430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast
hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.32 -0.31
23 AT1G40390 DNAse I-like superfamily protein 0.63 0.32 -0.31
24 AT5G16220 Octicosapeptide/Phox/Bem1p family protein 0.63 0.33 -0.33
25 AT5G46210 cullin4 ATCUL4, cullin4 0.63 0.33 -0.32
26 AT5G63320 nuclear protein X1 nuclear protein X1 0.63 0.33 -0.31
27 AT3G51050 FG-GAP repeat-containing protein 0.63 0.32 -0.3
28 AT3G12670 CTP synthase family protein embryo defective 2742 0.63 0.29 -0.34
29 AT2G15930 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.32
30 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.62 0.33 -0.31
31 AT3G21960 Receptor-like protein kinase-related family protein 0.62 0.31 -0.31
32 AT5G67470 formin homolog 6 ARABIDOPSIS FORMIN HOMOLOG 6,
formin homolog 6		 0.62 0.31 -0.32
33 AT1G72160 Sec14p-like phosphatidylinositol transfer family protein -0.62 0.35 -0.31
34 AT1G17665 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to
146 proteins in 39 species: Archae - 0; Bacteria - 4;
Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.62 0.31 -0.31
35 AT3G07880 Immunoglobulin E-set superfamily protein SUPERCENTIPEDE1 -0.62 0.32 -0.34
36 AT5G01860 C2H2 and C2HC zinc fingers superfamily protein 0.62 0.31 -0.32
37 AT2G03270 DNA-binding protein, putative 0.62 0.31 -0.32
38 AT1G11380 PLAC8 family protein -0.62 0.31 -0.31
39 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 0.62 0.32 -0.32
40 AT5G40020 Pathogenesis-related thaumatin superfamily protein -0.61 0.32 -0.31
41 AT1G06530 Tropomyosin-related peroxisomal and mitochondrial
division factor 2		 0.61 0.31 -0.31
42 AT2G40280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.61 0.31 -0.33
43 AT4G15500 UDP-Glycosyltransferase superfamily protein UGT84A4 -0.61 0.33 -0.31
44 AT5G04200 metacaspase 9 metacaspase 9, metacaspase 2f,
metacaspase 9, metacaspase 2f		 -0.61 0.31 -0.31
45 AT5G56620 NAC domain containing protein 99 NAC domain containing protein 99,
NAC domain containing protein 99		 -0.61 0.31 -0.31
46 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 -0.61 0.29 -0.32
47 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.61 0.34 -0.3
48 AT2G19390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits
to 188 proteins in 60 species: Archae - 0; Bacteria - 11;
Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other
Eukaryotes - 41 (source: NCBI BLink).		 0.61 0.3 -0.32
49 ATCG01020 ribosomal protein L32 ribosomal protein L32 0.6 0.32 -0.32
50 AT3G03320 RNA-binding ASCH domain protein -0.6 0.32 -0.32
51 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.6 0.31 -0.31
52 AT2G23250 UDP-glucosyl transferase 84B2 UDP-glucosyl transferase 84B2 0.6 0.3 -0.31
53 AT5G11300 mitotic-like cyclin 3B from Arabidopsis CYC2BAT, mitotic-like cyclin 3B
from Arabidopsis, CYCLIN A2;2		 -0.6 0.34 -0.34
54 AT1G49930 BEST Arabidopsis thaliana protein match is: Alanyl-tRNA
synthetase, class IIc (TAIR:AT5G22800.1); Has 21 Blast hits
to 21 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.31 -0.33
55 AT1G75860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits
to 235 proteins in 58 species: Archae - 0; Bacteria - 4;
Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.6 0.32 -0.32
56 AT5G53570 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.59 0.31 -0.31
57 AT4G11110 SPA1-related 2 SPA1-related 2 0.59 0.29 -0.32
58 AT4G17220 microtubule-associated proteins 70-5 microtubule-associated proteins
70-5, microtubule-associated
proteins 70-5		 -0.59 0.33 -0.3
59 AT1G01990 unknown protein; Has 32 Blast hits to 32 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.3 -0.31
60 AT3G59910 Ankyrin repeat family protein 0.58 0.31 -0.31
61 AT4G14060 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.58 0.32 -0.32
62 AT5G34895 transposable element gene -0.58 0.33 -0.31
63 AT4G21323 Subtilase family protein 0.58 0.28 -0.31
64 AT2G23210 UDP-Glycosyltransferase superfamily protein 0.58 0.32 -0.28
65 AT3G63000 NPL4-like protein 1 NPL4-like protein 1 0.58 0.32 -0.32
66 AT5G61340 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.33 -0.31
67 AT1G78930 Mitochondrial transcription termination factor family
protein		 0.57 0.32 -0.32
68 AT3G30220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.33 -0.32
69 AT4G09760 Protein kinase superfamily protein -0.57 0.29 -0.32
70 AT5G42910 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.57 0.3 -0.32
71 AT1G47410 unknown protein; Has 26 Blast hits to 26 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.35 -0.34
72 AT1G50470 F-box associated ubiquitination effector family protein 0.57 0.31 -0.33
73 AT2G39060 Nodulin MtN3 family protein AtSWEET9, SWEET9 -0.57 0.33 -0.34
74 AT2G16835 Aquaporin-like superfamily protein 0.56 0.31 -0.31
75 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.56 0.31 -0.28
76 AT1G52830 indole-3-acetic acid 6 indole-3-acetic acid 6, SHORT
HYPOCOTYL 1		 -0.56 0.28 -0.31
77 AT5G25410 Protein of Unknown Function (DUF239) 0.56 0.33 -0.32
78 AT5G10770 Eukaryotic aspartyl protease family protein -0.56 0.31 -0.28
79 AT4G17215 Pollen Ole e 1 allergen and extensin family protein -0.56 0.3 -0.32
80 AT4G32180 pantothenate kinase 2 pantothenate kinase 2,
pantothenate kinase 2		 0.56 0.29 -0.32
81 AT2G32930 zinc finger nuclease 2 zinc finger nuclease 2 0.56 0.31 -0.33
82 AT2G29150 NAD(P)-binding Rossmann-fold superfamily protein 0.56 0.31 -0.32
83 AT1G54840 HSP20-like chaperones superfamily protein -0.55 0.29 -0.3
84 AT2G23540 GDSL-like Lipase/Acylhydrolase superfamily protein -0.55 0.31 -0.33
85 AT3G55590 Glucose-1-phosphate adenylyltransferase family protein -0.55 0.36 -0.33
86 AT1G36940 unknown protein; Has 21 Blast hits to 21 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.55 0.35 -0.31
87 AT3G06360 arabinogalactan protein 27 arabinogalactan protein 27,
ARABINOGALACTAN PROTEIN 27		 -0.55 0.33 -0.33
88 AT1G72150 PATELLIN 1 PATELLIN 1 -0.54 0.32 -0.3
89 AT2G28350 auxin response factor 10 auxin response factor 10 -0.54 0.31 -0.31
90 AT5G01360 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 3 -0.54 0.31 -0.3
91 AT2G37090 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 -0.54 0.34 -0.33
92 AT5G56540 arabinogalactan protein 14 arabinogalactan protein 14,
ATAGP14		 -0.54 0.33 -0.3
93 AT3G21680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root, flower,
stamen; EXPRESSED DURING: 4 anthesis, petal differentiation
and expansion stage; Has 34 Blast hits to 34 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.53 0.32 -0.34
94 AT2G20620 Protein of unknown function (DUF626) -0.53 0.31 -0.33
95 AT4G03670 transposable element gene -0.53 0.3 -0.32
96 AT2G05820 transposable element gene -0.53 0.33 -0.3
97 AT1G52790 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.53 0.31 -0.31
98 AT3G59680 unknown protein; Has 34 Blast hits to 34 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.53 0.33 -0.33
99 AT5G57830 Protein of unknown function, DUF593 -0.52 0.33 -0.33
100 AT1G23760 BURP domain-containing protein JP630, POLYGALACTURONASE 3 -0.52 0.31 -0.28
101 AT5G28470 Major facilitator superfamily protein -0.51 0.32 -0.33
102 AT4G17790 SNARE associated Golgi protein family -0.51 0.32 -0.33
103 AT1G22015 Galactosyltransferase family protein DD46 -0.51 0.3 -0.29
104 AT5G15180 Peroxidase superfamily protein -0.51 0.32 -0.32
105 AT5G47635 Pollen Ole e 1 allergen and extensin family protein -0.51 0.32 -0.31
106 AT2G31085 CLAVATA3/ESR-RELATED 6 AtCLE6, CLAVATA3/ESR-RELATED 6 -0.5 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
107 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.77 0.45 -0.45 C0131
108 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) 0.76 0.46 -0.47
109 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis 0.64 0.45 -0.47 C0193
110 C0065 Cellobiose D-(+)-Cellobiose Cellobiose xyloglucan biosynthesis,
starch degradation I 		0.6 0.31 -0.32 C0065