AT2G39140 : PIGMENT DEFECTIVE 328
Query Information
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AGICode AT2G39140
Description pseudouridine synthase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 1 0.31 -0.31
2 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.93 0.31 -0.33
3 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.91 0.3 -0.32
4 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.91 0.32 -0.32
5 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.91 0.32 -0.31
6 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.9 0.32 -0.32
7 AT4G37510 Ribonuclease III family protein 0.9 0.32 -0.32
8 AT3G25660 Amidase family protein 0.89 0.28 -0.32
9 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.89 0.31 -0.31
10 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.89 0.32 -0.29
11 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.89 0.3 -0.31
12 AT1G20020 ferredoxin-NADP(+)-oxidoreductase 2 LEAF FNR 2,
ferredoxin-NADP(+)-oxidoreductase
2		 0.89 0.31 -0.31
13 AT1G14270 CAAX amino terminal protease family protein 0.89 0.33 -0.3
14 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.89 0.31 -0.31
15 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.89 0.32 -0.32
16 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.89 0.29 -0.32
17 AT5G47190 Ribosomal protein L19 family protein 0.88 0.33 -0.32
18 AT5G66530 Galactose mutarotase-like superfamily protein 0.88 0.3 -0.3
19 AT2G24060 Translation initiation factor 3 protein 0.88 0.31 -0.33
20 AT5G55220 trigger factor type chaperone family protein 0.88 0.31 -0.32
21 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.88 0.32 -0.32
22 AT4G34290 SWIB/MDM2 domain superfamily protein 0.87 0.32 -0.31
23 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.87 0.32 -0.32
24 AT3G12080 GTP-binding family protein embryo defective 2738 0.87 0.32 -0.3
25 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.87 0.33 -0.32
26 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.87 0.3 -0.3
27 AT4G00180 Plant-specific transcription factor YABBY family protein YABBY3 0.87 0.34 -0.32
28 AT3G07670 Rubisco methyltransferase family protein 0.87 0.31 -0.29
29 AT2G28930 protein kinase 1B protein kinase 1B, protein kinase
1B		 0.87 0.29 -0.33
30 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GIANT CHLOROPLAST 1, SULA 0.87 0.3 -0.31
31 AT5G48220 Aldolase-type TIM barrel family protein 0.86 0.31 -0.31
32 AT5G39830 Trypsin family protein with PDZ domain DEG8, DEG PROTEASE 8 0.86 0.31 -0.3
33 AT2G39670 Radical SAM superfamily protein 0.86 0.31 -0.32
34 AT4G17560 Ribosomal protein L19 family protein 0.86 0.33 -0.31
35 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.86 0.32 -0.3
36 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.86 0.33 -0.3
37 AT2G02500 Nucleotide-diphospho-sugar transferases superfamily protein ATMEPCT, ISPD,
2-C-METHYL-D-ERYTHRITOL
4-PHOSPHATE CYTIDYLTRANSFERASE		 0.86 0.32 -0.3
38 AT5G08650 Small GTP-binding protein 0.86 0.32 -0.32
39 AT3G51140 Protein of unknown function (DUF3353) 0.86 0.32 -0.31
40 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.85 0.33 -0.31
41 AT4G39970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.85 0.31 -0.32
42 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.85 0.32 -0.3
43 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.85 0.34 -0.31
44 AT1G11430 plastid developmental protein DAG, putative 0.85 0.31 -0.33
45 AT3G56650 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 0.85 0.31 -0.31
46 AT1G60230 Radical SAM superfamily protein 0.85 0.33 -0.32
47 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.85 0.33 -0.32
48 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.85 0.32 -0.31
49 AT3G63190 ribosome recycling factor, chloroplast precursor Arabidopsis thaliana chloroplast
ribosome recycling factor,
chloroplast ribosome recycling
factor, HIGH CHLOROPHYLL
FLUORESCENCE AND PALE GREEN MUTANT
108, ribosome recycling factor,
chloroplast precursor		 0.85 0.31 -0.33
50 AT1G14410 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 1, PTAC1,
WHIRLY 1		 0.85 0.3 -0.31
51 AT3G46100 Histidyl-tRNA synthetase 1 Histidyl-tRNA synthetase 1,
Histidyl-tRNA synthetase 1		 0.84 0.31 -0.32
52 AT3G08010 RNA binding ATAB2 0.84 0.34 -0.33
53 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.84 0.31 -0.33
54 AT5G52520 Class II aaRS and biotin synthetases superfamily protein OVULE ABORTION 6, PROLYL-TRNA
SYNTHETASE 1		 0.84 0.3 -0.3
55 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.84 0.31 -0.31
56 AT3G60210 GroES-like family protein 0.84 0.31 -0.31
57 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 0.84 0.29 -0.32
58 AT3G15110 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3082
(InterPro:IPR021434); Has 77 Blast hits to 77 proteins in
38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi -
0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.84 0.31 -0.31
59 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.84 0.31 -0.32
60 AT3G14060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits
to 30 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.81 0.32 -0.3
61 AT5G66170 sulfurtransferase 18 sulfurtransferase 18 -0.81 0.34 -0.29
62 AT3G21240 4-coumarate:CoA ligase 2 4-coumarate:CoA ligase 2, AT4CL2 -0.8 0.33 -0.31
63 AT1G63440 heavy metal atpase 5 heavy metal atpase 5 -0.77 0.3 -0.29
64 AT3G26590 MATE efflux family protein -0.76 0.32 -0.29
65 AT5G20960 aldehyde oxidase 1 aldehyde oxidase 1, aldehyde
oxidase 1, aldehyde oxidase alpha,
ARABIDOPSIS THALIANA ALDEHYDE
OXIDASE 1, ATAO, Arabidopsis
thaliana aldehyde oxidase 1		 -0.75 0.3 -0.33
66 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.75 0.31 -0.3
67 AT2G22330 cytochrome P450, family 79, subfamily B, polypeptide 3 cytochrome P450, family 79,
subfamily B, polypeptide 3		 -0.75 0.3 -0.33
68 AT3G16450 Mannose-binding lectin superfamily protein Jacalin-related lectin 33 -0.74 0.32 -0.33
69 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.74 0.32 -0.3
70 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.74 0.29 -0.31
71 AT5G65020 annexin 2 annexin 2 -0.74 0.3 -0.3
72 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.73 0.33 -0.31
73 AT1G54030 GDSL-like Lipase/Acylhydrolase superfamily protein GOLGI DEFECTS 36, MODIFIED VACUOLE
PHENOTYPE 1		 -0.73 0.31 -0.3
74 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.71 0.32 -0.34
75 AT3G51440 Calcium-dependent phosphotriesterase superfamily protein -0.71 0.32 -0.32
76 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein -0.71 0.31 -0.31
77 AT5G24600 Protein of unknown function, DUF599 -0.7 0.3 -0.33
78 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.7 0.31 -0.3
79 AT1G74100 sulfotransferase 16 SULFOTRANSFERASE 16, ARABIDOPSIS
SULFOTRANSFERASE 5A, CORONATINE
INDUCED-7, sulfotransferase 16		 -0.7 0.3 -0.31
80 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.7 0.31 -0.32
81 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.7 0.31 -0.32
82 AT2G30130 Lateral organ boundaries (LOB) domain family protein ASL5, LBD12, PEACOCK 1 -0.69 0.32 -0.31
83 AT4G34600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane
system; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: M germinated pollen stage, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.69 0.31 -0.33
84 AT1G59740 Major facilitator superfamily protein -0.68 0.31 -0.32
85 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.68 0.31 -0.29
86 AT3G19200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits
to 51 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.32 -0.3
87 AT1G07260 UDP-glucosyl transferase 71C3 UDP-glucosyl transferase 71C3 -0.67 0.31 -0.32
88 AT1G09380 nodulin MtN21 /EamA-like transporter family protein -0.67 0.28 -0.31
89 AT1G33750 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.66 0.32 -0.33
90 AT4G11350 Protein of unknown function (DUF604) -0.66 0.31 -0.3
91 AT5G06300 Putative lysine decarboxylase family protein LONELY GUY 7 -0.66 0.33 -0.31
92 AT5G01830 ARM repeat superfamily protein -0.66 0.32 -0.3