AT2G38140 : plastid-specific ribosomal protein 4
Query Information
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AGICode AT2G38140
Description plastid-specific ribosomal protein 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 1 0.31 -0.32
2 AT1G29070 Ribosomal protein L34 0.96 0.31 -0.32
3 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.96 0.32 -0.32
4 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.95 0.33 -0.31
5 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.94 0.33 -0.31
6 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.94 0.34 -0.33
7 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.94 0.32 -0.32
8 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.94 0.32 -0.34
9 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.94 0.32 -0.32
10 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.93 0.31 -0.32
11 AT5G65220 Ribosomal L29 family protein 0.93 0.31 -0.33
12 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.93 0.29 -0.32
13 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.93 0.29 -0.32
14 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.93 0.31 -0.31
15 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.92 0.32 -0.3
16 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.92 0.3 -0.31
17 AT2G33450 Ribosomal L28 family 0.92 0.33 -0.31
18 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.92 0.32 -0.34
19 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.92 0.32 -0.3
20 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.92 0.32 -0.29
21 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.92 0.32 -0.31
22 AT5G55220 trigger factor type chaperone family protein 0.92 0.29 -0.33
23 AT2G43030 Ribosomal protein L3 family protein 0.92 0.31 -0.32
24 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.91 0.31 -0.3
25 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.91 0.3 -0.32
26 AT3G54210 Ribosomal protein L17 family protein 0.91 0.31 -0.32
27 AT3G60750 Transketolase 0.91 0.32 -0.3
28 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.91 0.34 -0.3
29 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.91 0.32 -0.29
30 AT3G23700 Nucleic acid-binding proteins superfamily 0.91 0.32 -0.32
31 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.31 -0.33
32 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.91 0.33 -0.3
33 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.91 0.32 -0.31
34 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.91 0.3 -0.32
35 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.91 0.3 -0.3
36 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.91 0.29 -0.31
37 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.31 -0.3
38 AT2G18710 SECY homolog 1 SECY homolog 1 0.91 0.32 -0.35
39 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.91 0.32 -0.31
40 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.91 0.3 -0.3
41 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.9 0.32 -0.33
42 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.9 0.3 -0.33
43 AT3G12930 Lojap-related protein 0.9 0.33 -0.31
44 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.9 0.31 -0.33
45 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.9 0.31 -0.29
46 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.9 0.32 -0.31
47 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.9 0.29 -0.32
48 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.9 0.32 -0.32
49 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.9 0.31 -0.31
50 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.9 0.32 -0.32
51 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.9 0.32 -0.33
52 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.9 0.31 -0.3
53 AT1G53520 Chalcone-flavanone isomerase family protein 0.9 0.33 -0.35
54 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.3 -0.3
55 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.9 0.33 -0.31
56 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.9 0.3 -0.32
57 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.9 0.32 -0.32
58 AT2G24090 Ribosomal protein L35 0.9 0.34 -0.31
59 AT5G54600 Translation protein SH3-like family protein 0.9 0.32 -0.31
60 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.3 -0.31
61 AT5G52970 thylakoid lumen 15.0 kDa protein 0.9 0.32 -0.32
62 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.31 -0.33
63 AT3G51140 Protein of unknown function (DUF3353) 0.9 0.3 -0.31
64 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.9 0.33 -0.31
65 AT2G45270 glycoprotease 1 glycoprotease 1 0.89 0.34 -0.31
66 AT4G01310 Ribosomal L5P family protein 0.89 0.31 -0.33
67 AT5G47190 Ribosomal protein L19 family protein 0.89 0.31 -0.31
68 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.89 0.32 -0.3
69 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.89 0.33 -0.33
70 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.3 -0.28
71 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.89 0.32 -0.31
72 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.89 0.31 -0.32
73 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.89 0.31 -0.3
74 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.89 0.31 -0.31
75 AT4G26370 antitermination NusB domain-containing protein 0.89 0.32 -0.33
76 AT2G24060 Translation initiation factor 3 protein 0.89 0.31 -0.32
77 AT2G01590 chlororespiratory reduction 3 CHLORORESPIRATORY REDUCTION 3 0.89 0.31 -0.31
78 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.33 -0.3
79 AT4G37510 Ribonuclease III family protein 0.89 0.3 -0.33
80 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.89 0.32 -0.29
81 AT5G42070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.89 0.33 -0.32
82 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.89 0.33 -0.32
83 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.3 -0.32
84 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.89 0.33 -0.31
85 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.89 0.29 -0.32
86 AT1G14030 Rubisco methyltransferase family protein 0.89 0.29 -0.31
87 AT1G76450 Photosystem II reaction center PsbP family protein 0.88 0.33 -0.33
88 AT4G34290 SWIB/MDM2 domain superfamily protein 0.88 0.3 -0.3
89 AT3G28460 methyltransferases 0.88 0.31 -0.31
90 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.88 0.28 -0.33
91 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.88 0.32 -0.29
92 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.88 0.3 -0.32
93 AT3G25660 Amidase family protein 0.88 0.3 -0.31
94 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.31 -0.32
95 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.88 0.31 -0.3
96 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.88 0.34 -0.32
97 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.88 0.32 -0.31
98 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.88 0.29 -0.33
99 AT4G17560 Ribosomal protein L19 family protein 0.88 0.34 -0.33
100 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.33 -0.31
101 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.88 0.3 -0.33
102 AT5G66530 Galactose mutarotase-like superfamily protein 0.88 0.33 -0.32
103 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.88 0.33 -0.33
104 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.88 0.32 -0.32
105 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.88 0.3 -0.32
106 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.88 0.32 -0.32
107 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.88 0.32 -0.34
108 AT5G08650 Small GTP-binding protein 0.88 0.31 -0.32
109 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.88 0.31 -0.32
110 AT1G29330 ER lumen protein retaining receptor family protein ARABIDOPSIS ENDOPLASMIC RETICULUM
RETENTION DEFECTIVE 2, ARABIDOPSIS
THALIANA ENDOPLASMIC RETICULUM
RETENTION DEFECTIVE 2, ENDOPLASMIC
RETICULUM RETENTION DEFECTIVE 2		 -0.81 0.3 -0.32
111 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.81 0.32 -0.33
112 AT3G25290 Auxin-responsive family protein -0.81 0.31 -0.31
113 AT5G06750 Protein phosphatase 2C family protein -0.79 0.33 -0.34
114 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.78 0.32 -0.31
115 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.78 0.31 -0.33
116 AT4G37310 cytochrome P450, family 81, subfamily H, polypeptide 1 cytochrome P450, family 81,
subfamily H, polypeptide 1		 -0.77 0.32 -0.3
117 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.77 0.32 -0.32
118 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.76 0.31 -0.3
119 AT5G65870 phytosulfokine 5 precursor phytosulfokine 5 precursor, PSK5,
phytosulfokine 5 precursor		 -0.76 0.32 -0.33
120 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.75 0.31 -0.33
121 AT3G57380 Glycosyltransferase family 61 protein -0.75 0.3 -0.31
122 AT1G72900 Toll-Interleukin-Resistance (TIR) domain-containing protein -0.75 0.33 -0.32
123 AT5G18780 F-box/RNI-like superfamily protein -0.75 0.31 -0.31
124 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22		 -0.74 0.31 -0.33
125 AT2G27450 nitrilase-like protein 1 ATNLP1, CPA, nitrilase-like
protein 1		 -0.74 0.29 -0.32
126 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.34 -0.31
127 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.74 0.31 -0.3
128 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 -0.74 0.34 -0.33
129 AT4G14010 ralf-like 32 ralf-like 32 -0.73 0.32 -0.33
130 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.72 0.3 -0.31
131 AT2G22330 cytochrome P450, family 79, subfamily B, polypeptide 3 cytochrome P450, family 79,
subfamily B, polypeptide 3		 -0.72 0.33 -0.31
132 AT3G16450 Mannose-binding lectin superfamily protein Jacalin-related lectin 33 -0.71 0.33 -0.32
133 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 -0.7 0.29 -0.33
134 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.7 0.33 -0.32
135 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.7 0.3 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.77 0.43 -0.44 C0051