AT2G39900 : WLIM2a
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT2G39900
Description GATA type zinc finger transcription factor family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a 1 0.34 -0.33
2 AT4G14960 Tubulin/FtsZ family protein TUA6 0.85 0.33 -0.31
3 AT1G09630 RAB GTPase 11C ARABIDOPSIS RAB GTPASE A2A, RAB
GTPase 11C, ARABIDOPSIS RAB GTPASE
A2A, RAB GTPASE A2A, RAB GTPase
11C		 0.85 0.32 -0.32
4 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.84 0.31 -0.3
5 AT5G61840 Exostosin family protein GUT1 0.82 0.33 -0.31
6 AT1G22790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast
hits to 67 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.82 0.31 -0.31
7 AT3G13674 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast
hits to 76 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.33 -0.3
8 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.81 0.33 -0.31
9 AT1G04820 tubulin alpha-4 chain TORTIFOLIA 2, tubulin alpha-4
chain		 0.81 0.33 -0.32
10 AT3G51010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.81 0.29 -0.31
11 AT3G02560 Ribosomal protein S7e family protein 0.81 0.31 -0.29
12 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.8 0.32 -0.32
13 AT3G10730 SAD1/UNC-84 domain protein 2 ARABIDOPSIS SAD1/UNC-84 DOMAIN
PROTEIN 2, SAD1/UNC-84 domain
protein 2		 0.8 0.31 -0.33
14 AT4G33250 eukaryotic translation initiation factor 3K ATTIF3K1, eukaryotic translation
initiation factor 3K, TIF3K1		 0.8 0.32 -0.31
15 AT2G04780 FASCICLIN-like arabinoogalactan 7 FASCICLIN-like arabinoogalactan 7 0.8 0.31 -0.3
16 AT3G55380 ubiquitin-conjugating enzyme 14 ubiquitin-conjugating enzyme 14 0.8 0.32 -0.33
17 AT3G55005 tonneau 1b (TON1b) tonneau 1b 0.79 0.34 -0.29
18 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C		 0.79 0.32 -0.33
19 AT3G22460 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 O-acetylserine (thiol) lyase
(OAS-TL) isoform A2		 -0.78 0.33 -0.29
20 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 0.78 0.28 -0.3
21 AT4G25260 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.78 0.32 -0.31
22 AT1G47200 WPP domain protein 2 WPP domain protein 2 0.78 0.33 -0.32
23 AT1G10630 ADP-ribosylation factor A1F ADP-ribosylation factor A1F,
ADP-ribosylation factor A1F		 0.78 0.31 -0.33
24 AT2G23110 Late embryogenesis abundant protein, group 6 -0.78 0.32 -0.32
25 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.78 0.32 -0.31
26 AT3G43810 calmodulin 7 calmodulin 7 0.77 0.31 -0.33
27 AT3G14270 phosphatidylinositol-4-phosphate 5-kinase family protein FORMS APLOID AND BINUCLEATE CELLS
1B		 -0.77 0.31 -0.32
28 AT5G50170 C2 calcium/lipid-binding and GRAM domain containing protein -0.77 0.32 -0.32
29 AT1G64640 early nodulin-like protein 8 AtENODL8, early nodulin-like
protein 8		 0.77 0.3 -0.31
30 AT4G30130 Protein of unknown function (DUF630 and DUF632) 0.77 0.31 -0.3
31 AT4G28050 tetraspanin7 tetraspanin7 0.77 0.32 -0.33
32 AT5G07590 Transducin/WD40 repeat-like superfamily protein 0.77 0.33 -0.3
33 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 -0.76 0.32 -0.31
34 AT1G48610 AT hook motif-containing protein 0.76 0.32 -0.31
35 AT1G03420 transposable element gene sadhu non-coding retrotransposon
4-2		 0.76 0.3 -0.33
36 AT5G01460 LMBR1-like membrane protein 0.76 0.31 -0.31
37 AT1G43710 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 embryo defective 1075 0.76 0.33 -0.29
38 AT2G20810 galacturonosyltransferase 10 galacturonosyltransferase 10, LGT4 0.75 0.32 -0.28
39 AT2G43770 Transducin/WD40 repeat-like superfamily protein 0.75 0.31 -0.31
40 AT1G55160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.75 0.33 -0.32
41 AT3G44380 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.75 0.31 -0.32
42 AT3G07010 Pectin lyase-like superfamily protein 0.75 0.32 -0.33
43 AT3G03220 expansin A13 EXPANSIN 13, expansin A13, ATHEXP
ALPHA 1.22, EXP13, expansin A13		 0.75 0.29 -0.32
44 AT1G05790 lipase class 3 family protein -0.75 0.33 -0.29
45 AT4G30680 Initiation factor eIF-4 gamma, MA3 0.74 0.31 -0.32
46 AT3G48750 cell division control 2 cell division control 2, CDC2A,
CDC2AAT, CDK2, CDKA1, CDKA;1		 0.74 0.32 -0.32
47 AT1G13340 Regulator of Vps4 activity in the MVB pathway protein -0.74 0.33 -0.33
48 AT2G06925 Phospholipase A2 family protein PHOSPHOLIPASE A2-ALPHA, PLA2-ALPHA 0.74 0.31 -0.31
49 AT2G20300 Protein kinase superfamily protein Abnormal Leaf Shape 2 0.74 0.34 -0.34
50 AT2G39880 myb domain protein 25 myb domain protein 25, myb domain
protein 25		 0.74 0.33 -0.3
51 AT3G63130 RAN GTPase activating protein 1 RAN GTPASE-ACTIVATING PROTEIN 1,
RAN GTPase activating protein 1		 0.74 0.3 -0.31
52 AT5G24330 ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 ARABIDOPSIS TRITHORAX-RELATED
PROTEIN 6, SET DOMAIN PROTEIN 34		 0.74 0.32 -0.31
53 AT3G43720 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.74 0.31 -0.3
54 AT3G62840 Small nuclear ribonucleoprotein family protein 0.74 0.33 -0.31
55 AT1G36510 Nucleic acid-binding proteins superfamily -0.73 0.33 -0.31
56 AT5G37890 Protein with RING/U-box and TRAF-like domains 0.73 0.31 -0.3
57 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.31 -0.33
58 AT5G50000 Protein kinase superfamily protein 0.73 0.32 -0.3
59 AT3G46030 Histone superfamily protein HTB11 0.73 0.32 -0.32
60 AT1G48230 nodulin MtN21 /EamA-like transporter family protein 0.73 0.31 -0.32
61 AT1G57620 emp24/gp25L/p24 family/GOLD family protein 0.73 0.3 -0.3
62 AT1G70310 spermidine synthase 2 spermidine synthase 2 0.73 0.32 -0.33
63 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.31 -0.31
64 AT3G18780 actin 2 actin 2, DEFORMED ROOT HAIRS 1,
ENHANCER OF LRX1 2, FRIZZY AND
KINKED SHOOTS 2, LIGHT
STRESS-REGULATED 2		 0.73 0.28 -0.33
65 AT2G24290 Protein of unknown function (DUF1068) 0.73 0.34 -0.3
66 AT1G35620 PDI-like 5-2 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 8, PDI-like
5-2, PROTEIN DISULFIDE ISOMERASE
8, PDI-like 5-2		 0.73 0.35 -0.3
67 AT5G55310 DNA topoisomerase 1 beta TOPOISOMERASE 1, DNA topoisomerase
1 beta		 -0.73 0.31 -0.3
68 AT3G12610 Leucine-rich repeat (LRR) family protein DNA-DAMAGE REPAIR/TOLERATION 100 0.73 0.32 -0.33
69 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 0.73 0.3 -0.36
70 AT5G16480 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP5, plant and fungi
atypical dual-specificity
phosphatase 5		 0.72 0.32 -0.31
71 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 0.72 0.34 -0.32
72 AT2G34590 Transketolase family protein 0.72 0.32 -0.31
73 AT5G15770 glucose-6-phosphate acetyltransferase 1 glucose-6-phosphate
acetyltransferase 1,
glucose-6-phosphate
acetyltransferase 1		 0.72 0.31 -0.34
74 AT1G29400 MEI2-like protein 5 MEI2-like protein 5, MEI2-like
protein 5		 -0.72 0.33 -0.33
75 AT3G60140 Glycosyl hydrolase superfamily protein BETA GLUCOSIDASE 30, DARK
INDUCIBLE 2, SENESCENCE-RELATED
GENE 2		 -0.72 0.32 -0.31
76 AT3G06660 PAPA-1-like family protein / zinc finger (HIT type) family
protein		 0.72 0.31 -0.31
77 AT4G02500 UDP-xylosyltransferase 2 ARABIDOPSIS THALIANA
UDP-XYLOSYLTRANSFERASE 2,
UDP-xylosyltransferase 2, XYG
XYLOSYLTRANSFERASE 2		 0.72 0.33 -0.34
78 AT4G29870 Oligosaccharyltransferase complex/magnesium transporter
family protein		 0.72 0.3 -0.3
79 AT3G08870 Concanavalin A-like lectin protein kinase family protein -0.72 0.32 -0.3
80 AT2G17975 zinc finger (Ran-binding) family protein -0.71 0.32 -0.31
81 AT1G24460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins
in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa -
70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other
Eukaryotes - 33775 (source: NCBI BLink).		 TGN-localized SYP41 interacting
protein		 -0.7 0.32 -0.29
82 AT1G50410 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.7 0.3 -0.32
83 AT3G20660 organic cation/carnitine transporter4 organic cation/carnitine
transporter4, organic
cation/carnitine transporter4		 -0.69 0.32 -0.32
84 AT1G66390 myb domain protein 90 ATMYB90, myb domain protein 90,
PRODUCTION OF ANTHOCYANIN PIGMENT
2		 -0.69 0.33 -0.32
85 AT1G12880 nudix hydrolase homolog 12 nudix hydrolase homolog 12, nudix
hydrolase homolog 12		 -0.69 0.29 -0.31
86 AT5G52430 hydroxyproline-rich glycoprotein family protein -0.69 0.32 -0.32
87 AT5G10940 transducin family protein / WD-40 repeat family protein ALTERED SEED GERMINATION 2 -0.69 0.32 -0.32
88 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.68 0.32 -0.32
89 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.67 0.3 -0.32
90 AT2G39030 Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity 1 -0.67 0.33 -0.31
91 AT5G11700 LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: glycine-rich protein
(TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.67 0.34 -0.33
92 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.67 0.31 -0.32
93 AT5G65240 Leucine-rich repeat protein kinase family protein -0.67 0.32 -0.31
94 AT5G12040 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 -0.67 0.33 -0.3
95 AT2G17000 Mechanosensitive ion channel family protein -0.66 0.31 -0.32
96 AT1G72830 nuclear factor Y, subunit A3 ATHAP2C, HAP2C, nuclear factor Y,
subunit A3		 -0.66 0.31 -0.32
97 AT1G04120 multidrug resistance-associated protein 5 ATP-binding cassette C5,
Arabidopsis thaliana ATP-binding
cassette C5, multidrug
resistance-associated protein 5,
MULTIDRUG RESISTANCE PROTEIN 5,
multidrug resistance-associated
protein 5		 -0.66 0.3 -0.3
98 AT1G78130 Major facilitator superfamily protein unfertilized embryo sac 2 -0.66 0.31 -0.3
99 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 -0.66 0.32 -0.33
100 AT5G40340 Tudor/PWWP/MBT superfamily protein -0.65 0.33 -0.31
101 AT1G24330 ARM repeat superfamily protein -0.65 0.32 -0.31
102 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 -0.65 0.32 -0.31
103 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.65 0.32 -0.31
104 AT3G47060 FTSH protease 7 FTSH protease 7 -0.64 0.31 -0.33
105 AT5G53890 phytosylfokine-alpha receptor 2 AtPSKR2, phytosylfokine-alpha
receptor 2		 -0.64 0.3 -0.3
106 AT3G28890 receptor like protein 43 receptor like protein 43, receptor
like protein 43		 -0.64 0.3 -0.32
107 AT5G02630 Lung seven transmembrane receptor family protein -0.64 0.31 -0.32
108 AT1G63280 Serine protease inhibitor (SERPIN) family protein -0.64 0.33 -0.31
109 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.3 -0.3
110 AT2G17480 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 8,
MILDEW RESISTANCE LOCUS O 8		 -0.64 0.31 -0.31
111 AT2G41690 heat shock transcription factor B3 heat shock transcription factor
B3, HEAT SHOCK TRANSCRIPTION
FACTOR B3, heat shock
transcription factor B3		 -0.64 0.34 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
112 C0217 Putative glucosinole - - - 0.89 0.46 -0.49
113 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.78 0.45 -0.45 C0105
114 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		0.77 0.45 -0.48 C0228
115 C0029 3-Indolylacetonitrile - Indole-3-acetonitrile indole glucosinolate breakdown (insect chewing induced),
IAA biosynthesis I,
camalexin biosynthesis 		-0.71 0.33 -0.31 C0029
116 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.71 0.45 -0.45 C0131
117 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		-0.67 0.32 -0.33 C0254