AT2G45540 : -
Query Information
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AGICode AT2G45540
Description WD-40 repeat family protein / beige-related
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G45540 WD-40 repeat family protein / beige-related 1 0.32 -0.3
2 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.76 0.29 -0.3
3 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.76 0.31 -0.32
4 AT2G07360 SH3 domain-containing protein 0.72 0.31 -0.29
5 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.71 0.33 -0.31
6 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.71 0.31 -0.29
7 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.7 0.31 -0.33
8 AT1G71820 SEC6 SEC6 0.7 0.33 -0.32
9 AT2G36850 glucan synthase-like 8 GLUCAN SYNTHASE-LIKE 8, ATGSL8,
CHORUS, GSL08, glucan
synthase-like 8		 0.69 0.33 -0.31
10 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.68 0.31 -0.31
11 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.68 0.33 -0.3
12 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B 0.68 0.31 -0.3
13 AT4G03390 STRUBBELIG-receptor family 3 STRUBBELIG-receptor family 3 0.68 0.3 -0.32
14 AT2G04830 Protein of unknown function (DUF295) 0.67 0.31 -0.33
15 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.66 0.33 -0.32
16 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.66 0.32 -0.31
17 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.66 0.32 -0.31
18 AT5G55670 RNA-binding (RRM/RBD/RNP motifs) family protein 0.66 0.33 -0.35
19 AT4G32620 Enhancer of polycomb-like transcription factor protein 0.66 0.31 -0.29
20 AT1G67140 HEAT repeat-containing protein SWEETIE 0.66 0.31 -0.29
21 AT3G63180 TIC-like TICKLE, TIC-like 0.66 0.33 -0.32
22 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.66 0.33 -0.32
23 AT1G29140 Pollen Ole e 1 allergen and extensin family protein 0.65 0.29 -0.32
24 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.65 0.3 -0.32
25 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.65 0.31 -0.32
26 AT3G11650 NDR1/HIN1-like 2 NDR1/HIN1-like 2 -0.65 0.33 -0.31
27 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.64 0.31 -0.3
28 AT1G69170 Squamosa promoter-binding protein-like (SBP domain)
transcription factor family protein		 0.64 0.3 -0.3
29 AT5G03970 F-box associated ubiquitination effector family protein -0.64 0.31 -0.32
30 AT3G15980 Coatomer, beta' subunit 0.64 0.33 -0.31
31 AT4G34500 Protein kinase superfamily protein -0.64 0.33 -0.31
32 AT4G24980 nodulin MtN21 /EamA-like transporter family protein 0.64 0.34 -0.29
33 AT2G36810 ARM repeat superfamily protein 0.64 0.31 -0.32
34 AT5G27970 ARM repeat superfamily protein 0.64 0.33 -0.29
35 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.64 0.32 -0.29
36 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.64 0.34 -0.3
37 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.31 -0.32
38 AT4G38120 ARM repeat superfamily protein 0.64 0.34 -0.31
39 AT3G23870 Protein of unknown function (DUF803) 0.63 0.33 -0.37
40 AT1G21630 Calcium-binding EF hand family protein 0.63 0.32 -0.33
41 AT1G75790 SKU5 similar 18 SKU5 similar 18 0.63 0.33 -0.3
42 AT3G47800 Galactose mutarotase-like superfamily protein -0.62 0.33 -0.33
43 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.62 0.3 -0.3
44 AT3G15430 Regulator of chromosome condensation (RCC1) family protein 0.62 0.32 -0.32
45 AT1G33990 methyl esterase 14 METHYL ESTERASE 14, methyl
esterase 14		 -0.62 0.29 -0.33
46 AT2G20190 CLIP-associated protein CLIP-ASSOCIATED PROTEIN,
CLIP-associated protein		 0.62 0.32 -0.31
47 AT1G15220 cytochrome c biogenesis protein family ATCCMH, CCMH -0.61 0.31 -0.31
48 AT3G11960 Cleavage and polyadenylation specificity factor (CPSF) A
subunit protein		 0.61 0.33 -0.32
49 AT5G28090 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.61 0.31 -0.3
50 AT1G31810 Formin Homology 14 Formin Homology 14 0.61 0.32 -0.31
51 AT2G35630 ARM repeat superfamily protein GEM1, MICROTUBULE ORGANIZATION 1 0.61 0.3 -0.33
52 AT1G18290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.32 -0.32
53 AT5G13390 no exine formation 1 NO EXINE FORMATION 1 0.6 0.33 -0.34
54 AT5G27630 acyl-CoA binding protein 5 acyl-CoA binding protein 5 0.6 0.32 -0.32
55 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.6 0.3 -0.3
56 AT2G15720 transposable element gene 0.6 0.3 -0.32
57 AT3G20040 Hexokinase ATHXK4, HEXOKINASE-LIKE 2 0.6 0.31 -0.32
58 AT1G68720 tRNA arginine adenosine deaminase ARABIDOPSIS THALIANA TRNA
ADENOSINE DEAMINASE A, tRNA
arginine adenosine deaminase		 0.6 0.3 -0.33
59 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.6 0.3 -0.32
60 AT2G25660 embryo defective 2410 embryo defective 2410 0.6 0.31 -0.3
61 AT1G43970 unknown protein; Has 10 Blast hits to 8 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.31 -0.32
62 AT3G29760 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.6 0.31 -0.31
63 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.59 0.34 -0.3
64 AT4G36620 GATA transcription factor 19 GATA transcription factor 19,
hanaba taranu like 2		 0.59 0.31 -0.31
65 AT2G12610 transposable element gene -0.59 0.3 -0.3
66 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.59 0.31 -0.31
67 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.33 -0.3
68 AT4G17330 G2484-1 protein G2484-1 protein, G2484-1 protein 0.59 0.31 -0.32
69 AT1G80070 Pre-mRNA-processing-splicing factor EMBRYO DEFECTIVE 14, EMBRYO
DEFECTIVE 177, EMBRYO DEFECTIVE
33, ABNORMAL SUSPENSOR 2		 0.59 0.29 -0.32
70 AT4G07425 transposable element gene 0.59 0.32 -0.31
71 ATCG01020 ribosomal protein L32 ribosomal protein L32 0.58 0.32 -0.33
72 AT3G52640 Zn-dependent exopeptidases superfamily protein 0.58 0.34 -0.31
73 AT1G05550 Protein of unknown function (DUF295) 0.58 0.3 -0.34
74 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.58 0.29 -0.33
75 AT2G14170 aldehyde dehydrogenase 6B2 aldehyde dehydrogenase 6B2 -0.58 0.29 -0.32
76 AT3G59270 FBD-like domain family protein 0.58 0.33 -0.31
77 AT4G31930 Mitochondrial glycoprotein family protein -0.58 0.32 -0.33
78 AT5G11040 TRS120 AtTRS120, TRS120 0.58 0.32 -0.3
79 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.58 0.32 -0.3
80 AT2G34580 CONTAINS InterPro DOMAIN/s: Herpesvirus UL139,
cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.57 0.34 -0.31
81 AT5G56110 myb domain protein 103 myb domain protein 103,
ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 80, MALE STERILE 188, myb
domain protein 103, MYB80		 0.57 0.33 -0.31
82 AT1G75550 glycine-rich protein 0.57 0.33 -0.31
83 AT5G28280 pseudogene, sterol desaturase domain-containing protein,
CER1-like, A.thaliana, ATCER1L19; blastp match of 55%
identity and 8.9e-22 P-value to
GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 CER1 {Oryza
sativa}		 -0.57 0.32 -0.3
84 AT1G70520 cysteine-rich RLK (RECEPTOR-like protein kinase) 2 ALTERED SEED GERMINATION 6,
cysteine-rich RLK (RECEPTOR-like
protein kinase) 2		 -0.57 0.32 -0.3
85 AT2G02640 Cysteine/Histidine-rich C1 domain family protein -0.57 0.31 -0.31
86 AT5G48550 F-box associated ubiquitination effector family protein -0.57 0.34 -0.32
87 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.56 0.36 -0.32
88 AT1G75600 Histone superfamily protein -0.56 0.31 -0.32
89 AT3G12850 COP9 signalosome complex-related / CSN complex-related 0.56 0.32 -0.32
90 AT2G30590 WRKY DNA-binding protein 21 WRKY DNA-binding protein 21 -0.56 0.31 -0.31
91 AT4G37770 1-amino-cyclopropane-1-carboxylate synthase 8 1-amino-cyclopropane-1-carboxylate
synthase 8		 -0.56 0.31 -0.31
92 AT1G21220 transposable element gene -0.55 0.33 -0.33
93 AT3G30150 transposable element gene -0.55 0.35 -0.31
94 AT2G04550 indole-3-butyric acid response 5 DUAL SPECIFICITY PROTEIN
PHOSPHATASE 1E, indole-3-butyric
acid response 5		 -0.54 0.31 -0.29
95 AT5G61600 ethylene response factor 104 ethylene response factor 104 -0.54 0.32 -0.31
96 AT2G41010 calmodulin (CAM)-binding protein of 25 kDa calmodulin (CAM)-binding protein
of 25 kDa, calmodulin
(CAM)-binding protein of 25 kDa		 -0.53 0.32 -0.31
97 AT1G24210 Paired amphipathic helix (PAH2) superfamily protein -0.53 0.29 -0.31
98 AT5G52140 RING/U-box superfamily protein -0.53 0.32 -0.33
99 AT1G33760 Integrase-type DNA-binding superfamily protein -0.53 0.33 -0.35
100 AT1G35647 transposable element gene -0.53 0.3 -0.32
101 AT5G12120 Ubiquitin-associated/translation elongation factor EF1B
protein		 -0.53 0.31 -0.29
102 AT4G13090 xyloglucan endotransglucosylase/hydrolase 2 xyloglucan
endotransglucosylase/hydrolase 2		 -0.53 0.31 -0.3
103 AT2G02120 Scorpion toxin-like knottin superfamily protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
70, PDF2.1		 -0.52 0.33 -0.29
104 AT5G59660 Leucine-rich repeat protein kinase family protein -0.52 0.3 -0.31
105 AT1G49350 pfkB-like carbohydrate kinase family protein -0.52 0.31 -0.31
106 AT3G05310 MIRO-related GTP-ase 3 MIRO-related GTP-ase 3 -0.51 0.32 -0.31
107 AT3G30440 transposable element gene -0.51 0.32 -0.29
108 AT2G24600 Ankyrin repeat family protein -0.51 0.32 -0.32
109 AT4G17990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17700.1); Has 134 Blast hits
to 131 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.51 0.32 -0.3
110 AT3G57100 Protein of unknown function (DUF677) -0.51 0.32 -0.3
111 AT1G18740 Protein of unknown function (DUF793) -0.51 0.31 -0.32
112 AT4G07600 transposable element gene -0.5 0.31 -0.3
113 AT2G28355 low-molecular-weight cysteine-rich 5 low-molecular-weight cysteine-rich
5		 -0.5 0.31 -0.33
114 AT4G36000 Pathogenesis-related thaumatin superfamily protein -0.5 0.3 -0.33
115 AT3G11820 syntaxin of plants 121 AT-SYR1, ATSYP121, SYNTAXIN
RELATED PROTEIN 1, PENETRATION1,
syntaxin of plants 121, SYNTAXIN
RELATED PROTEIN 1		 -0.5 0.33 -0.32
116 AT5G54460 wound-responsive protein-related -0.49 0.33 -0.31
117 AT2G21230 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.49 0.32 -0.33
118 AT1G80730 zinc-finger protein 1 ARABIDOPSIS THALIANA ZINC-FINGER
PROTEIN 1, zinc-finger protein 1		 -0.49 0.32 -0.32
119 AT5G41400 RING/U-box superfamily protein -0.49 0.31 -0.31
120 AT4G10925 Nuclear transport factor 2 (NTF2) family protein -0.49 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
121 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.62 0.46 -0.42 C0233
122 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.61 0.54 -0.48 C0082